ScanImage: flexible software for operating laser scanning microscopes

scientific article

ScanImage: flexible software for operating laser scanning microscopes is …
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scholarly articleQ13442814

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P6179Dimensions Publication ID1016385189
P356DOI10.1186/1475-925X-2-13
P3181OpenCitations bibliographic resource ID1258965
P932PMC publication ID161784
P698PubMed publication ID12801419
P5875ResearchGate publication ID10713650

P50authorBernardo L. SabatiniQ29169188
P2093author name stringKarel Svoboda
Thomas A Pologruto
P2860cites workTwo-photon laser scanning fluorescence microscopyQ28280674
Long-term in vivo imaging of experience-dependent synaptic plasticity in adult cortexQ29614371
Multi-photon laser scanning microscopy using an acoustic optical deflectorQ30503537
A custom-made two-photon microscope and deconvolution systemQ30654643
Two-photon imaging in living brain slicesQ30707400
Fast scanning and efficient photodetection in a simple two-photon microscopeQ30826991
Anatomical and functional imaging of neurons using 2-photon laser scanning microscopyQ34319452
Photon upmanship: why multiphoton imaging is more than a gimmickQ34422870
High-resolution imaging of synaptic structure with a simple confocal microscope.Q35177440
Experimental and theoretical comparison of photon-counting and current measurements of light intensityQ39917049
Facilitation at single synapses probed with optical quantal analysisQ44021759
Intrinsic circuitry involving the local axon collaterals of corticothalamic projection cells in mouse SmI cortexQ48224197
P433issue1
P407language of work or nameEnglishQ1860
P921main subjectsoftwareQ7397
laserQ38867
biomedical engineeringQ327092
P304page(s)13
P577publication date2003-05-17
P1433published inBioMedical Engineering OnLineQ15753859
P1476titleScanImage: flexible software for operating laser scanning microscopes
P478volume2

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Q42409698Dopaminergic modulation of synaptic transmission and neuronal activity patterns in the zebrafish homolog of olfactory cortex
Q28276335Dopaminergic neurons inhibit striatal output through non-canonical release of GABA
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Q92585855Dynamic Signal Compression for Robust Motion Vision in Flies
Q39243883Dynamic imaging of AMPA receptor trafficking in vitro and in vivo
Q92186855Dynamic nonlinearities enable direction opponency in Drosophila elementary motion detectors
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Q39515187Efficient Receptive Field Tiling in Primate V1.
Q57612048Electrotonic signal processing in AII amacrine cells: compartmental models and passive membrane properties for a gap junction-coupled retinal neuron
Q89956320Elevated PSD-95 Blocks Ion-flux Independent LTD: A Potential New Role for PSD-95 in Synaptic Plasticity
Q42116838Encoding of luminance and contrast by linear and nonlinear synapses in the retina
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Q100503861Endoplasmic reticulum visits highly active spines and prevents runaway potentiation of synapses
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Q51544168Evaluation of texture parameters for the quantitative description of multimodal nonlinear optical images from atherosclerotic rabbit arteries.
Q37633620Excitatory synaptic inputs to mouse on-off direction-selective retinal ganglion cells lack direction tuning.
Q47911189Experience-Dependent Plasticity of Odor Representations in the Telencephalon of Zebrafish.
Q95309814Experience-Dependent Reorganization Drives Development of a Binocularly Unified Cortical Representation of Orientation
Q34540782Experience-dependent and cell-type-specific spine growth in the neocortex.
Q34681940Extended depth of field microscopy for rapid volumetric two-photon imaging
Q92054854Extinction of cue-evoked food seeking recruits a GABAergic interneuron ensemble in the dorsal medial prefrontal cortex of mice
Q42506952Extracellular Glutamate in the Nucleus Accumbens Is Nanomolar in Both Synaptic and Non-synaptic Compartments
Q93249529Extrasynaptic NMDA Receptors on Rod Pathway Amacrine Cells: Molecular Composition, Activation, and Signaling
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Q54986580Fast axial scanning for 2-photon microscopy using liquid lens technology.
Q33600444Fast gene transfer into the adult zebrafish brain by herpes simplex virus 1 (HSV-1) and electroporation: methods and optogenetic applications
Q99630928Fast micron-scale 3D printing with a resonant-scanning two-photon microscope
Q34205750Fast non-negative temporal deconvolution for laser scanning microscopy
Q36178497Fast volumetric calcium imaging across multiple cortical layers using sculpted light
Q33751662Fate of cajal-retzius neurons in the postnatal mouse neocortex.
Q30557336Feature detection and orientation tuning in the Drosophila central complex
Q90709751Features of the structure, development, and activity of the zebrafish noradrenergic system explored in new CRISPR transgenic lines
Q47430847Feeding State Modulates Behavioral Choice and Processing of Prey Stimuli in the Zebrafish Tectum.
Q90028884Fine Control of Sound Frequency Tuning and Frequency Discrimination Acuity by Synaptic Zinc Signaling in Mouse Auditory Cortex
Q92280009Five-dimensional two-photon volumetric microscopy of in-vivo dynamic activities using liquid lens remote focusing
Q50150511Fluorescence anisotropy imaging in drug discovery.
Q91471768Fluorescence lifetime imaging nanoscopy for measuring Förster resonance energy transfer in cellular nanodomains
Q28821461Frazzled promotes growth cone attachment at the source of a Netrin gradient in the Drosophila visual system
Q95326249Freeze-frame imaging of synaptic activity using SynTagMA
Q35897720Function and Circuitry of VIP+ Interneurons in the Mouse Retina
Q91082004Functional Distinctions between Spine and Dendritic Synapses Made onto Parvalbumin-Positive Interneurons in Mouse Cortex
Q41051777Functional Interactions between Newborn and Mature Neurons Leading to Integration into Established Neuronal Circuits.
Q93178675Functional Logic of Layer 2/3 Inhibitory Connectivity in the Ferret Visual Cortex
Q88364099Functional Maps of Mechanosensory Features in the Drosophila Brain
Q91115917Functional Synaptic Architecture of Callosal Inputs in Mouse Primary Visual Cortex
Q33840309Functional imaging of cortical feedback projections to the olfactory bulb
Q30497210Functional imaging of hippocampal place cells at cellular resolution during virtual navigation
Q49133484Functional imaging with cellular resolution reveals precise micro-architecture in visual cortex.
Q30408742Functional response properties of VIP-expressing inhibitory neurons in mouse visual and auditory cortex
Q37423115Functional specialization of mouse higher visual cortical areas.
Q104074728Functional, molecular and morphological heterogeneity of superficial interneurons in the larval zebrafish tectum
Q90836201Fundamental bounds on the fidelity of sensory cortical coding
Q38432728GABAergic Neurons in Ferret Visual Cortex Participate in Functionally Specific Networks.
Q48267345GRASP1 Regulates Synaptic Plasticity and Learning through Endosomal Recycling of AMPA Receptors
Q91215866Gap Junction Coupling Shapes the Encoding of Light in the Developing Retina
Q91362858Generation of stable heading representations in diverse visual scenes
Q42508214Genetically Distinct Parallel Pathways in the Entopeduncular Nucleus for Limbic and Sensorimotor Output of the Basal Ganglia
Q90484069Genomic Decoding of Neuronal Depolarization by Stimulus-Specific NPAS4 Heterodimers
Q30586613Germ plasm anchoring is a dynamic state that requires persistent trafficking
Q30554414Glassy dynamics in three-dimensional embryonic tissues
Q34182716Glutamate induces the elongation of early dendritic protrusions via mGluRs in wild type mice, but not in fragile X mice
Q34589022HelioScan: a software framework for controlling in vivo microscopy setups with high hardware flexibility, functional diversity and extendibility.
Q92585861Heterogeneous Temporal Contrast Adaptation in Drosophila Direction-Selective Circuits
Q34964343Heterosynaptic structural plasticity on local dendritic segments of hippocampal CA1 neurons
Q52682022High contrast imaging and flexible photomanipulation for quantitative in vivo multiphoton imaging with polygon scanning microscope.
Q38818760High-Content Screening for Quantitative Cell Biology.
Q90055756High-contrast, fast chemical imaging by coherent Raman scattering using a self-synchronized two-colour fibre laser
Q72587818High-dimensional geometry of population responses in visual cortex
Q92826799High-performance calcium sensors for imaging activity in neuronal populations and microcompartments
Q21562291High-resolution labeling and functional manipulation of specific neuron types in mouse brain by Cre-activated viral gene expression
Q34320668High-resolution optical control of spatiotemporal neuronal activity patterns in zebrafish using a digital micromirror device.
Q45029030High-resolution, 2- and 3-dimensional imaging of uncut, unembedded tissue biopsy samples
Q93112689High-speed imaging of glutamate release with genetically encoded sensors
Q57910561High-yield in vitro recordings from neurons functionally characterized in vivo
Q57414427High-yield methods for accurate two-alternative visual psychophysics in head-fixed mice
Q100506462Hippocampal inputs engage CCK+ interneurons to mediate endocannabinoid-modulated feed-forward inhibition in the prefrontal cortex
Q42362043History-dependent variability in population dynamics during evidence accumulation in cortex
Q38983057Homer1a drives homeostatic scaling-down of excitatory synapses during sleep.
Q30585043Hybrid multiphoton volumetric functional imaging of large-scale bioengineered neuronal networks
Q30403515Imaging activity in neurons and glia with a Polr2a-based and cre-dependent GCaMP5G-IRES-tdTomato reporter mouse.
Q37700959Imaging an optogenetic pH sensor reveals that protons mediate lateral inhibition in the retina
Q33197918Imaging calcium concentration dynamics in small neuronal compartments.
Q33301795Imaging large-scale neural activity with cellular resolution in awake, mobile mice
Q30529767Imaging light responses of targeted neuron populations in the rodent retina
Q48484756Imaging neocortical neurons through a chronic cranial window.
Q30569915Imaging of molecular surface dynamics in brain slices using single-particle tracking
Q48453158Imaging synaptic protein dynamics using photoactivatable green fluorescent protein.
Q34804839Impaired NMDA receptor transmission alters striatal synapses and DISC1 protein in an age-dependent manner.
Q91705239Impaired perceptual learning in a mouse model of Fragile X syndrome is mediated by parvalbumin neuron dysfunction and is reversible
Q37114691Impaired synaptic development in a maternal immune activation mouse model of neurodevelopmental disorders
Q58561087Improved methods for marking active neuron populations
Q48436237Improving AM ester calcium dye loading efficiency.
Q58585797In Situ Stimulated Raman Scattering (SRS) Microscopy Study of the Dissolution of Sustained-Release Implant Formulation
Q64990257In Vivo Calcium Imaging of Cardiomyocytes in the Beating Mouse Heart With Multiphoton Microscopy.
Q40177119In Vivo Evidence for a Lactate Gradient from Astrocytes to Neurons.
Q92127566In Vivo Submillisecond Two-Photon Optogenetics with Temporally Focused Patterned Light
Q33391366In vivo 2-photon calcium imaging in layer 2/3 of mice
Q39940311In vivo imaging demonstrates dendritic spine stabilization by SynCAM 1.
Q30544881In vivo imaging of alphaherpesvirus infection reveals synchronized activity dependent on axonal sorting of viral proteins.
Q50465547In vivo imaging of axonal and dendritic structures in neonatal mouse cortex.
Q33497731In vivo imaging of deep cortical layers using a microprism
Q37087759In vivo imaging of dendritic pruning in dentate granule cells
Q48818961In vivo imaging of intersynaptic vesicle exchange using VGLUT1 Venus knock-in mice.
Q57995417In vivo measurement of afferent activity with axon-specific calcium imaging
Q48300624In vivo three-photon imaging of activity of GCaMP6-labeled neurons deep in intact mouse brain.
Q37396544In vivo three-photon microscopy of subcortical structures within an intact mouse brain
Q48510545In vivo two-photon imaging of motoneurons and adjacent glia in the ventral spinal cord.
Q34499224In vivo two-photon imaging of neurons and glia in the mouse spinal cord
Q91106667Inception loops discover what excites neurons most using deep predictive models
Q91508920Incomplete block of NMDA receptors by intracellular MK-801
Q48022202Increased Prevalence of Calcium Transients across the Dendritic Arbor during Place Field Formation
Q28570265Induction of spine growth and synapse formation by regulation of the spine actin cytoskeleton
Q45086238Influx of extracellular calcium regulates actin-dependent morphological plasticity in dendritic spines.
Q97422547Inhibition of impulsive action by projection-defined prefrontal pyramidal neurons
Q27305511Inhibitory Neuron Transplantation into Adult Visual Cortex Creates a New Critical Period that Rescues Impaired Vision.
Q90246327Inhibitory regulation of calcium transients in prefrontal dendritic spines is compromised by a nonsense Shank3 mutation
Q47853823Input-Specific NMDAR-Dependent Potentiation of Dendritic GABAergic Inhibition
Q58724713Integration of Parallel Opposing Memories Underlies Memory Extinction
Q83226331Interhemispherically dynamic representation of an eye movement-related activity in mouse frontal cortex
Q30491382Internally mediated developmental desynchronization of neocortical network activity
Q58572072Intravitreal AAV-Delivery of Genetically Encoded Sensors Enabling Simultaneous Two-Photon Imaging and Electrophysiology of Optic Nerve Axons
Q27316470Inverse size scaling of the nucleolus by a concentration-dependent phase transition
Q57904005Inverse-response Ca indicators for optogenetic visualization of neuronal inhibition
Q30362458Invited Review Article: Pump-probe microscopy
Q99244678Jitter suppression for resonant galvo based high-throughput laser scanning systems
Q37732617Kainate receptors mediate signaling in both transient and sustained OFF bipolar cell pathways in mouse retina.
Q92480214Ketamine disinhibits dendrites and enhances calcium signals in prefrontal dendritic spines
Q64099775Ketamine disrupts neuromodulatory control of glutamatergic synaptic transmission
Q38432575Kinetics of Endogenous CaMKII Required for Synaptic Plasticity Revealed by Optogenetic Kinase Inhibitor
Q44629164LTP-induced long-term stabilization of individual nascent dendritic spines.
Q96138376Label-free assessment of hemodynamics in individual cortical brain vessels using third harmonic generation microscopy
Q27349610Label-free nonlinear optical microscopy detects early markers for osteogenic differentiation of human stem cells
Q36194724Labeling and analysis of chicken taste buds using molecular markers in oral epithelial sheets
Q89991437Lamina-specific AMPA receptor dynamics following visual deprivation in vivo
Q30777445Large-scale imaging of cortical dynamics during sensory perception and behavior
Q47400685Lateral geniculate neurons projecting to primary visual cortex show ocular dominance plasticity in adult mice.
Q35572565Layer 4 pyramidal neurons exhibit robust dendritic spine plasticity in vivo after input deprivation
Q91402845Layer 5 Circuits in V1 Differentially Control Visuomotor Behavior
Q35689454Learning enhances the relative impact of top-down processing in the visual cortex
Q35974324Lepr(db) mouse model of type 2 diabetes: pancreatic islet isolation and live-cell 2-photon imaging of intact islets
Q33825907Liberated PKA Catalytic Subunits Associate with the Membrane via Myristoylation to Preferentially Phosphorylate Membrane Substrates
Q99614290Limiting RyR2 Open Time Prevents Alzheimer's Disease-Related Neuronal Hyperactivity and Memory Loss but Not β-Amyloid Accumulation
Q47615003Live cell imaging of cytosolic NADH/NAD+ ratio in hepatocytes and liver slices
Q34664252Live imaging of endogenous PSD-95 using ENABLED: a conditional strategy to fluorescently label endogenous proteins.
Q36621956Live-cell superresolution imaging by pulsed STED two-photon excitation microscopy
Q64082783Live-imaging of Bioengineered Cartilage Tissue using Multimodal Non-linear Molecular Imaging
Q47986565Local Order within Global Disorder: Synaptic Architecture of Visual Space
Q24629206Local, persistent activation of Rho GTPases during plasticity of single dendritic spines
Q90028823Localizing Proton-Mediated Inhibitory Feedback at the Retinal Horizontal Cell-Cone Synapse with Genetically-Encoded pH Probes
Q42287800Locally dynamic synaptic learning rules in pyramidal neuron dendrites
Q22248084Locus ceruleus controls Alzheimer's disease pathology by modulating microglial functions through norepinephrine
Q35824198Long wavelength multiphoton excitation is advantageous for intravital kidney imaging
Q35053685Long-distance integration of nuclear ERK signaling triggered by activation of a few dendritic spines
Q102051996Long-range remote focusing by image-plane aberration correction
Q37340829Long-term depression triggers the selective elimination of weakly integrated synapses.
Q33484154Long-term, high-resolution imaging in the mouse neocortex through a chronic cranial window
Q36760919Longitudinal Effects of Ketamine on Dendritic Architecture In Vivo in the Mouse Medial Frontal Cortex
Q34059721Longitudinal in vivo two-photon fluorescence imaging
Q35190212Loss of PSD-95 enrichment is not a prerequisite for spine retraction
Q37355364Loss of SynDIG1 Reduces Excitatory Synapse Maturation But Not Formation In Vivo
Q42374457Luciferase shRNA Presents off-Target Effects on Voltage-Gated Ion Channels in Mouse Hippocampal Pyramidal Neurons.
Q33240204MPScope: a versatile software suite for multiphoton microscopy
Q96680710Mapping astrocyte activity domains by light sheet imaging and spatio-temporal correlation screening
Q35214217Mapping brain activity at scale with cluster computing
Q50055413Mapping stimulus feature selectivity in macaque V1 by two-photon Ca2+ imaging: Encoding-model analysis of fluorescence responses to natural movies.
Q30829062Mapping synaptic glutamate transporter dysfunction in vivo to regions surrounding Aβ plaques by iGluSnFR two-photon imaging
Q44557620Mechanisms of lateral inhibition in the olfactory bulb: efficiency and modulation of spike-evoked calcium influx into granule cells.
Q34576021Mechanistic insight into the TH1-biased immune response to recombinant subunit vaccines delivered by probiotic bacteria-derived outer membrane vesicles
Q39833649Memory-Relevant Mushroom Body Output Synapses Are Cholinergic
Q27330205MicroRNA-encoded behavior in Drosophila
Q33397501Microbeam-integrated multiphoton imaging system
Q90044650Microcircuit Rules Governing Impact of Single Interneurons on Purkinje Cell Output In Vivo
Q45983938Microprisms for in vivo multilayer cortical imaging.
Q91342211Microvessel occlusions alter amyloid-beta plaque morphology in a mouse model of Alzheimer's disease
Q57815310Midbody Positioning and Distance Between Daughter Nuclei Enable Unequivocal Identification of Cardiomyocyte Cell Division in Mice
Q37726179Midbrain dopamine neurons sustain inhibitory transmission using plasma membrane uptake of GABA, not synthesis.
Q34519182Minimum conditions for the induction of cortical spreading depression in brain slices.
Q83227419Modular organization of cerebellar climbing fiber inputs during goal-directed behavior
Q52671180Molecular mobility and activity in an intravital imaging setting - implications for cancer progression and targeting.
Q45127980Monitoring neural activity and [Ca2+] with genetically encoded Ca2+ indicators.
Q92184910Motor Behavior Selectively Inhibits Hair Cells Activated by Forward Motion in the Lateral Line of Zebrafish
Q35964113Motor-Skill Learning Is Dependent on Astrocytic Activity
Q35214793Multi-photon excited luminescence of magnetic FePt core-shell nanoparticles.
Q33574750Multimodal nonlinear optical imaging of atherosclerotic plaque development in myocardial infarction-prone rabbits
Q89256779Multiphoton Intravital Calcium Imaging
Q44083357Multiphoton fluorescence, second harmonic generation, and fluorescence lifetime imaging of whole cleared mouse organs
Q111854323Multiphoton imaging of neural structure and activity in Drosophila through the intact cuticle
Q41461375Multiphoton microscopy of cleared mouse brain expressing YFP.
Q48135690Multiphoton microscopy of cleared mouse organs
Q41749327Multiphoton microscopy with clearing for three dimensional histology of kidney biopsies
Q30667690Multiple dynamic representations in the motor cortex during sensorimotor learning
Q92351638Myosin V regulates synaptopodin clustering and localization in the dendrites of hippocampal neurons
Q39671181NMDA receptor agonists fail to alter release from cerebellar basket cells
Q28565516NMDA receptor subunit-dependent [Ca2+] signaling in individual hippocampal dendritic spines
Q56531014NPAS4 recruits CCK basket cell synapses and enhances cannabinoid-sensitive inhibition in the mouse hippocampus
Q47582818Near-Infrared Fluorescent Proteins Engineered from Bacterial Phytochromes in Neuroimaging
Q30415679Near-infrared-induced heating of confined water in polymeric particles for efficient payload release
Q91558953Neddylation regulates excitatory synaptic transmission and plasticity
Q67241689Neural Activity in Barrel Cortex Underlying Vibrissa-Based Object Localization in Mice
Q28603112Neural circuits. Inhibition protects acquired song segments during vocal learning in zebra finches
Q27697983Neural circuits. Labeling of active neural circuits in vivo with designed calcium integrators
Q34421436Neural correlates of water reward in thirsty Drosophila
Q28261905Neural dynamics for landmark orientation and angular path integration
Q35660933Neural ensemble communities: open-source approaches to hardware for large-scale electrophysiology.
Q37479474Neurofibromin is the major ras inactivator in dendritic spines.
Q24658250Neurokinin 1 receptors regulate morphine-induced endocytosis and desensitization of mu-opioid receptors in CNS neurons
Q36473870Neuromodulation of excitatory synaptogenesis in striatal development
Q92416443Neuronal Architecture of a Visual Center that Processes Optic Flow
Q48169378Neuronal Stimulation Triggers Neuronal Glycolysis and Not Lactate Uptake
Q59058180Neuronal filtering of multiplexed odour representations
Q64163808Neutrophil adhesion in brain capillaries reduces cortical blood flow and impairs memory function in Alzheimer's disease mouse models
Q100540805Neutrophils Obstructing Brain Capillaries Are a Major Cause of No-Reflow in Ischemic Stroke
Q48740182Nitrophenyl-based caged neurotransmitters.
Q36794349Nogo Receptor 1 Limits Ocular Dominance Plasticity but not Turnover of Axonal Boutons in a Model of Amblyopia
Q30425910Nogo receptor 1 limits tactile task performance independent of basal anatomical plasticity
Q90348399Non-Canonical Control of Neuronal Energy Status by the Na+ Pump
Q36017290Non-Ionotropic NMDA Receptor Signaling Drives Activity-Induced Dendritic Spine Shrinkage.
Q34553683Nonlinear [Ca2+] signaling in dendrites and spines caused by activity-dependent depression of Ca2+ extrusion.
Q44980409Nonlinear dendritic integration of sensory and motor input during an active sensing task
Q35787582Nonlinearity of two-photon Ca2+ imaging yields distorted measurements of tuning for V1 neuronal populations
Q50420749Nontoxic, double-deletion-mutant rabies viral vectors for retrograde targeting of projection neurons.
Q48320106Nonuniform surround suppression of visual responses in mouse V1.
Q33841781Norepinephrine controls astroglial responsiveness to local circuit activity.
Q56334654Novel Lipid Signaling Mediators for Mesenchymal Stem Cell Mobilization during Bone Repair
Q95650753Object-Displacement-Sensitive Visual Neurons Drive Freezing in Drosophila
Q94666915Oblique angle transient-reflectivity laser-scanning microscopy for mineral imaging in natural ores
Q37205664Olfactory imprinting is triggered by MHC peptide ligands
Q48236522Olfactory pattern classification by discrete neuronal network states
Q37011172Olfactory stimulation selectively modulates the OFF pathway in the retina of zebrafish
Q27321652OpenStage: a low-cost motorized microscope stage with sub-micron positioning accuracy
Q30494149Optical brain imaging in vivo: techniques and applications from animal to man.
Q36949188Optical dissection of odor information processing in vivo using GCaMPs expressed in specified cell types of the olfactory bulb
Q27674109Optimization of a GCaMP Calcium Indicator for Neural Activity Imaging
Q91867147Optimizing Optogenetic Activation of Purkinje Cell Axons to Investigate the Purkinje Cell - DCN Synapse
Q48145777Organization of orientation-specific whisker deflection responses in layer 2/3 of mouse somatosensory cortex.
Q37589810Orientation selectivity and the functional clustering of synaptic inputs in primary visual cortex
Q36431463Orthogonal micro-organization of orientation and spatial frequency in primate primary visual cortex
Q37318054Overexpression of calcium-activated potassium channels underlies cortical dysfunction in a model of PTEN-associated autism
Q91241687Oxyphor 2P: A High-Performance Probe for Deep-Tissue Longitudinal Oxygen Imaging
Q101407192Oxytocin Shapes Spontaneous Activity Patterns in the Developing Visual Cortex by Activating Somatostatin Interneurons
Q55255522Oxytocin functions as a spatiotemporal filter for excitatory synaptic inputs to VTA dopamine neurons.
Q90256056PKCα integrates spatiotemporally distinct Ca2+ and autocrine BDNF signaling to facilitate synaptic plasticity
Q91340911Parvalbumin-Positive Neuron Loss and Amyloid-β Deposits in the Frontal Cortex of Alzheimer's Disease-Related Mice
Q100418590Pathway-specific dysregulation of striatal excitatory synapses by LRRK2 mutations
Q36066925Pattern and not magnitude of neural activity determines dendritic spine stability in awake mice
Q50479805Peripheral deafferentation-driven functional somatosensory map shifts are associated with local, not large-scale dendritic structural plasticity.
Q37479508Phosphorylation of Ser1166 on GluN2B by PKA is critical to synaptic NMDA receptor function and Ca2+ signaling in spines
Q108792326Photoactivatable CaMKII induces synaptic plasticity in single synapses
Q60142598Photoactivatable drugs for nicotinic optopharmacology
Q48218606Plasticity of calcium channels in dendritic spines
Q30356075Population-Level Representation of a Temporal Sequence Underlying Song Production in the Zebra Finch.
Q45967949Population-scale organization of cerebellar granule neuron signaling during a visuomotor behavior.
Q36072667Postsynaptic, not presynaptic NMDA receptors are required for spike-timing-dependent LTD induction
Q61455032Pre-Clinical Translation of Second Harmonic Microscopy of Meniscal and Articular Cartilage Using a Prototype Nonlinear Microendoscope
Q98720864Precise Holographic Manipulation of Olfactory Circuits Reveals Coding Features Determining Perceptual Detection
Q57480695Precise Synaptic Balance in the Zebrafish Homolog of Olfactory Cortex
Q40306897Precise lamination of retinal axons generates multiple parallel input pathways in the tectum
Q90716822Prepontine non-giant neurons drive flexible escape behavior in zebrafish
Q36605554Presynaptic Adenosine Receptor-Mediated Regulation of Diverse Thalamocortical Short-Term Plasticity in the Mouse Whisker Pathway.
Q93051079Presynaptic Boutons That Contain Mitochondria Are More Stable
Q90760718Presynaptic Inhibition Selectively Gates Auditory Transmission to the Brainstem Startle Circuit
Q100522162Preventing neuronal edema increases network excitability after traumatic brain injury
Q36630336Principles of two-photon excitation fluorescence microscopy and other nonlinear imaging approaches
Q33246709Principles of two-photon excitation microscopy and its applications to neuroscience
Q42078954Probing the limits to positional information
Q34574821Prolonged, brain-wide expression of nuclear-localized GCaMP3 for functional circuit mapping
Q27309054Protocadherins control the modular assembly of neuronal columns in the zebrafish optic tectum
Q48305283Protracted and asynchronous accumulation of PSD95-family MAGUKs during maturation of nascent dendritic spines.
Q93331374Pulse length variation causing spectral distortions in OPO-based hyperspectral coherent Raman scattering microscopy
Q99244677Pupil plane actuated remote focusing for rapid focal depth control
Q98775578Quantifying Temperature Compensation of Bicoid Gradients with a Fast T-Tunable Microfluidic Device
Q37727012Quantifying the Bicoid morphogen gradient in living fly embryos
Q67403863Quantitative in vivo imaging of neuronal glucose concentrations with a genetically encoded fluorescence lifetime sensor.
Q51081793Quantitative nonlinear optical assessment of atherosclerosis progression in rabbits.
Q57131191Quantitative temporal interrogation in 3D of bioengineered human cartilage using multimodal label-free imaging
Q89532083Rac1 is a downstream effector of PKCα in structural synaptic plasticity
Q30486303Radially expanding transglial calcium waves in the intact cerebellum
Q56530863Rap2 and TNIK control Plexin-dependent tiled synaptic innervation in
Q36419060Rapid Onset of Motor Deficits in a Mouse Model of Spinocerebellar Ataxia Type 6 Precedes Late Cerebellar Degeneration
Q87954894Rapid Rebalancing of Excitation and Inhibition by Cortical Circuitry
Q33566849Rapid functional maturation of nascent dendritic spines
Q42089622Rapid mapping of visual receptive fields by filtered back projection: application to multi-neuronal electrophysiology and imaging
Q27335045Rapid redistribution of synaptic PSD-95 in the neocortex in vivo
Q91958997Rational Engineering of XCaMPs, a Multicolor GECI Suite for In Vivo Imaging of Complex Brain Circuit Dynamics
Q38852750Re-evaluation of learned information in Drosophila
Q35196975Reading out a spatiotemporal population code by imaging neighbouring parallel fibre axons in vivo
Q90591095RecV recombinase system for in vivo targeted optogenomic modifications of single cells or cell populations
Q90053797Recurrent interactions in local cortical circuits
Q92024110Reduced sensory-evoked structural plasticity in the aging barrel cortex
Q48564753Reduction of motion artifacts during in vivo two-photon imaging of brain through heartbeat triggered scanning.
Q37310755Regional differences in hippocampal calcium handling provide a cellular mechanism for limiting plasticity
Q50436941Relationship Between Synaptic AMPAR and Spine Dynamics: Impairments in the FXS Mouse.
Q30383025Remote z-scanning with a macroscopic voice coil motor for fast 3D multiphoton laser scanning microscopy
Q34810816Resolution and contrast enhancement in laser scanning microscopy using dark beam imaging
Q91264340Retinotopic Separation of Nasal and Temporal Motion Selectivity in the Mouse Superior Colliculus
Q40276922Reversible, activity-dependent targeting of profilin to neuronal nuclei
Q38435800Rho GTPase complementation underlies BDNF-dependent homo- and heterosynaptic plasticity.
Q48189159Ring attractor dynamics in the Drosophila central brain
Q64946509SBEMimage: Versatile Acquisition Control Software for Serial Block-Face Electron Microscopy.
Q33214394SK channels and NMDA receptors form a Ca2+-mediated feedback loop in dendritic spines.
Q36295139Scanning laser optical computed tomography system for large volume 3D dosimetry
Q90988828Secreted amyloid-β precursor protein functions as a GABABR1a ligand to modulate synaptic transmission
Q96167173Seeing Natural Images through the Eye of a Fly with Remote Focusing Two-Photon Microscopy
Q33623287Selective expression of ligand-gated ion channels in L5 pyramidal cell axons.
Q28506348Semaphorin 3E-Plexin-D1 signaling controls pathway-specific synapse formation in the striatum
Q40437540Semi-automatic 3D morphological reconstruction of neurons with densely branching morphology: Application to retinal AII amacrine cells imaged with multi-photon excitation microscopy
Q36839619Sensitive red protein calcium indicators for imaging neural activity
Q91215841Sensorimotor Transformations in the Zebrafish Auditory System
Q30804760Sensory and decision-related activity propagate in a cortical feedback loop during touch perception.
Q43614842Sensory-evoked LTP driven by dendritic plateau potentials in vivo
Q91806064Sensory-to-Category Transformation via Dynamic Reorganization of Ensemble Structures in Mouse Auditory Cortex
Q92431113Separation of Acute Desensitization and Long-Term Tolerance of µ-Opioid Receptors Is Determined by the Degree of C-Terminal Phosphorylation
Q44330114Separation of mu-opioid receptor desensitization and internalization: endogenous receptors in primary neuronal cultures.
Q92710055ShadowR: a novel chromoprotein with reduced non-specific binding and improved expression in living cells
Q42339205ShadowY: a dark yellow fluorescent protein for FLIM-based FRET measurement.
Q33272690Simple Windows-based software for the control of laser scanning confocal microscopes
Q30365344Simultaneous Multi-plane Imaging of Neural Circuits
Q35694383Simultaneous cellular-resolution optical perturbation and imaging of place cell firing fields
Q58714233Simultaneous dendritic voltage and calcium imaging and somatic recording from Purkinje neurons in awake mice
Q38435152Simultaneous dual-color fluorescence lifetime imaging with novel red-shifted fluorescent proteins.
Q57061112Simultaneous two-plane, two-photon imaging based on spatial multiplexing
Q99585797Single Cortical Microinfarcts Lead to Widespread Microglia/Macrophage Migration Along the White Matter
Q47802306Sleep-Stage-Specific Regulation of Cortical Excitation and Inhibition
Q56935896Software controlling algorithms for the system performance optimization of confocal laser scanning microscope
Q91914371Spaced Training Forms Complementary Long-Term Memories of Opposite Valence in Drosophila
Q24614009Sparse optical microstimulation in barrel cortex drives learned behaviour in freely moving mice
Q47711458Sparse, reliable, and long-term stable representation of periodic whisker deflections in the mouse barrel cortex
Q101574560Spatial connectivity matches direction selectivity in visual cortex
Q45954209Spatial pattern coding of sensory information by climbing fiber-evoked calcium signals in networks of neighboring cerebellar Purkinje cells.
Q33323523Spatiotemporally graded NMDA spike/plateau potentials in basal dendrites of neocortical pyramidal neurons
Q92382919Specialized coding of sensory, motor and cognitive variables in VTA dopamine neurons
Q37123342Species-specific wiring for direction selectivity in the mammalian retina
Q39727615Spikes in retinal bipolar cells phase-lock to visual stimuli with millisecond precision
Q34901087Spine neck plasticity controls postsynaptic calcium signals through electrical compartmentalization.
Q48078202Spontaneous Activity Drives Local Synaptic Plasticity In Vivo.
Q90732207Spontaneous Activity Patterns Are Altered in the Developing Visual Cortex of the Fmr1 Knockout Mouse
Q58083900Stability, affinity, and chromatic variants of the glutamate sensor iGluSnFR
Q52608797Stable Density and Dynamics of Dendritic Spines of Cortical Neurons Across the Estrous Cycle While Expressing Differential Levels of Sensory-Evoked Plasticity.
Q48509408Stalled cerebral capillary blood flow in mouse models of essential thrombocythemia and polycythemia vera revealed by in vivo two-photon imaging.
Q45123834State-dependent calcium signaling in dendritic spines of striatal medium spiny neurons
Q38667287Steady-State Free Ca2+ in Astrocytes Is Decreased by Experience and Impacts Arteriole Tone
Q35074186Stereotyped connectivity and computations in higher-order olfactory neurons
Q50798042Stereotyped odor-evoked activity in the mushroom body of Drosophila revealed by green fluorescent protein-based Ca2+ imaging.
Q42006907Stream-dependent development of higher visual cortical areas
Q47552610Streamlined sensory motor communication through cortical reciprocal connectivity in a visually guided eye movement task.
Q30539257Strengthening the accumbal indirect pathway promotes resilience to compulsive cocaine use.
Q42690295Structural plasticity underlies experience-dependent functional plasticity of cortical circuits
Q37717667Structural plasticity within the barrel cortex during initial phases of whisker-dependent learning
Q41294333Structure of a single whisker representation in layer 2 of mouse somatosensory cortex
Q48375951Structure-function relationships between aldolase C/zebrin II expression and complex spike synchrony in the cerebellum.
Q28581895Subcellular dynamics of type II PKA in neurons
Q45111146Subcellular mapping of dendritic activity in optic flow processing neurons
Q108922964Subthreshold repetitive transcranial magnetic stimulation drives structural synaptic plasticity in the young and aged motor cortex
Q33232269Supersensitive Ras activation in dendrites and spines revealed by two-photon fluorescence lifetime imaging
Q30490743Supraresolution imaging in brain slices using stimulated-emission depletion two-photon laser scanning microscopy.
Q89872752Surgical microscope with integrated fluorescence lifetime imaging for 5-aminolevulinic acid fluorescence-guided neurosurgery
Q41586938Sustained Rhythmic Brain Activity Underlies Visual Motion Perception in Zebrafish
Q36568016Synapse-specific and size-dependent mechanisms of spine structural plasticity accompanying synaptic weakening
Q36579012Synapse-specific expression of calcium-permeable AMPA receptors in neocortical layer 5.
Q48551415Synapse-specific plasticity and compartmentalized signaling in cerebellar stellate cells.
Q89850567Synaptic Zinc Enhances Inhibition Mediated by Somatostatin, but not Parvalbumin, Cells in Mouse Auditory Cortex
Q37076301Synaptic inputs compete during rapid formation of the calyx of Held: a new model system for neural development
Q48199405Synaptic organization of visual space in primary visual cortex
Q94654003Synergism of type 1 metabotropic and ionotropic glutamate receptors in cerebellar molecular layer interneurons in vivo
Q46032236Tactile Defensiveness and Impaired Adaptation of Neuronal Activity in the Fmr1 Knock-Out Mouse Model of Autism.
Q48614885Targeted single-cell electroporation of mammalian neurons in vivo.
Q48175061Targeting a Potassium Channel/Syntaxin Interaction Ameliorates Cell Death in Ischemic Stroke.
Q90691649Temperature Rise under Two-Photon Optogenetic Brain Stimulation
Q92825059Temporal Dynamics of Inhalation-Linked Activity across Defined Subpopulations of Mouse Olfactory Bulb Neurons Imaged In Vivo
Q21562339Temporal control of immediate early gene induction by light
Q41671825Thalamic input to auditory cortex is locally heterogeneous but globally tonotopic
Q33824881Thalamic nuclei convey diverse contextual information to layer 1 of visual cortex
Q42255977The Emergence of the Spatial Structure of Tectal Spontaneous Activity Is Independent of Visual Inputs.
Q67484011The Neuronal Basis of an Illusory Motion Percept Is Explained by Decorrelation of Parallel Motion Pathways.
Q31143726The Population Tracking Model: A Simple, Scalable Statistical Model for Neural Population Data
Q104068144The actin-modulating protein synaptopodin mediates long-term survival of dendritic spines
Q57470848The fate of hippocampal synapses depends on the sequence of plasticity-inducing events
Q30628073The functional micro-organization of grid cells revealed by cellular-resolution imaging
Q27334584The functional microarchitecture of the mouse barrel cortex
Q53280178The functional organization of cortical feedback inputs to primary visual cortex.
Q43119662The functional properties of barrel cortex neurons projecting to the primary motor cortex
Q48129481The in situ morphology of microglia is highly sensitive to the mode of tissue fixation
Q64268639The kinetic mechanisms of fast-decay red-fluorescent genetically encoded calcium indicators
Q51737387The logic of single-cell projections from visual cortex.
Q44777547The number of glutamate receptors opened by synaptic stimulation in single hippocampal spines.
Q46706131The relationship between PSD-95 clustering and spine stability in vivo.
Q36520894The synthesis-diffusion-degradation model explains Bicoid gradient formation in unfertilized eggs
Q30581964The use of optical clearing and multiphoton microscopy for investigation of three-dimensional tissue-engineered constructs.
Q96137996The zebrafish visual system transmits dimming information via multiple segregated pathways
Q27342833Thy1-GCaMP6 transgenic mice for neuronal population imaging in vivo
Q47838280Timing and location of synaptic inputs determine modes of subthreshold integration in striatal medium spiny neurons.
Q37700256Topology of ON and OFF inputs in visual cortex enables an invariant columnar architecture
Q41643120Transient Developmental Purkinje Cell Axonal Torpedoes in Healthy and Ataxic Mouse Cerebellum
Q29618402Transient and persistent dendritic spines in the neocortex in vivo
Q48108770Transient cerebellar alterations during development prior to obvious motor phenotype in a mouse model of spinocerebellar ataxia type 6.
Q64974182Two-Color Volumetric Imaging of Neuronal Activity of Cortical Columns.
Q36229678Two-Photon Laser Scanning Stereomicroscopy for Fast Volumetric Imaging
Q99633155Two-Photon Optogenetic Stimulation of Drosophila Neurons
Q91744733Two-photon Bessel beam tomography for fast volume imaging
Q33410768Two-photon axotomy and time-lapse confocal imaging in live zebrafish embryos
Q30477897Two-photon calcium imaging from head-fixed Drosophila during optomotor walking behavior
Q35415714Two-photon excitation microscopy and its applications in neuroscience
Q33747865Two-photon imaging of calcium in virally transfected striate cortical neurons of behaving monkey
Q35199929Two-photon imaging of neural activity in awake mobile mice.
Q34751887Two-photon imaging of neural population activity in zebrafish
Q37517299Two-photon imaging of the immune system: a custom technology platform for high-speed, multicolor tissue imaging of immune responses
Q36293731Two-photon laser-scanning microscopy for single and repetitive imaging of dorsal and lateral spinal white matter in vivo
Q33987948Two-way communication with neural networks in vivo using focused light
Q50675112Type I TARPs promote dendritic growth of early postnatal neocortical pyramidal cells in organotypic cultures.
Q45072444Ultra-selective looming detection from radial motion opponency
Q88938280Ultrafast neuronal imaging of dopamine dynamics with designed genetically encoded sensors
Q29616778Ultrasensitive fluorescent proteins for imaging neuronal activity
Q59899895Ultrastructural, Molecular and Functional Mapping of GABAergic Synapses on Dendritic Spines and Shafts of Neocortical Pyramidal Neurons
Q91044762Using slow frame rate imaging to extract fast receptive fields
Q90829007Vibrational spectroscopic imaging and live cell video microscopy for studying differentiation of primary human alveolar epithelial cells
Q36294603Video-rate volumetric functional imaging of the brain at synaptic resolution
Q30584315Virtual finger boosts three-dimensional imaging and microsurgery as well as terabyte volume image visualization and analysis
Q55137223Vision and Locomotion Shape the Interactions between Neuron Types in Mouse Visual Cortex.
Q92984450Visual Control of Walking Speed in Drosophila
Q96946048Visual Experience Influences Dendritic Orientation but Is Not Required for Asymmetric Wiring of the Retinal Direction Selective Circuit
Q67471915Visual Projection Neurons Mediating Directed Courtship in Drosophila.
Q90155484Visual cue-related activity of cells in the medial entorhinal cortex during navigation in virtual reality
Q35117682Visualization of NMDA receptor-dependent AMPA receptor synaptic plasticity in vivo
Q33951228Visualization of dynamics of single endogenous mRNA labeled in live mouse
Q83227620Visualizing endogenous opioid receptors in living neurons using ligand-directed chemistry
Q52148004Visualizing mRNA Dynamics in Live Neurons and Brain Tissues.
Q30837268Visualizing mammalian brain area interactions by dual-axis two-photon calcium imaging
Q45198760Visually Evoked 3-5 Hz Membrane Potential Oscillations Reduce the Responsiveness of Visual Cortex Neurons in Awake Behaving Mice.
Q30628346Volitional modulation of optically recorded calcium signals during neuroprosthetic learning
Q36436786Volume conservation principle involved in cell lengthening and nucleus movement during tissue morphogenesis.
Q30497312Wallerian degeneration of zebrafish trigeminal axons in the skin is required for regeneration and developmental pruning
Q48691537Wandering neuronal migration in the postnatal vertebrate forebrain.
Q61226388Whitening of odor representations by specific network connectivity
Q92784152Whitening of odor representations by the wiring diagram of the olfactory bulb
Q27324684Widespread state-dependent shifts in cerebellar activity in locomoting mice

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