Time-resolved fluorescence of 2-aminopurine as a probe of base flipping in M.HhaI-DNA complexes

scientific article

Time-resolved fluorescence of 2-aminopurine as a probe of base flipping in M.HhaI-DNA complexes is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1093/NAR/GKI995
P932PMC publication ID1310896
P698PubMed publication ID16340006
P5875ResearchGate publication ID7429804

P50authorSaulius GražulisQ28052829
Saulius KlimasauskasQ44433503
Robert K NeelyQ56523462
P2093author name stringDavid T F Dryden
Dalia Daujotyte
Anita C Jones
Steven W Magennis
P2860cites work2-Aminopurine as a fluorescent probe for DNA base flipping by methyltransferasesQ24546328
Biology of DNA restrictionQ24634671
Improved methods for building protein models in electron density maps and the location of errors in these modelsQ26776980
Crystallography & NMR System: A New Software Suite for Macromolecular Structure DeterminationQ26778405
Functional roles of the conserved threonine 250 in the target recognition domain of HhaI DNA methyltransferaseQ27628771
Structure of the N6-adenine DNA methyltransferase M.TaqI in complex with DNA and a cofactor analogQ27629529
The crystal structure of Haelll methyltransferase covalently complexed to DNA: An extrahelical cytosine and rearranged base pairingQ27729758
HhaI methyltransferase flips its target base out of the DNA helixQ27731553
Structures of HhaI methyltransferase complexed with substrates containing mismatches at the target baseQ27765722
The CCP4 suite: programs for protein crystallographyQ27861090
Heterogeneity and inaccuracy in protein structures solved by X-ray crystallography.Q30341462
Probing structure and dynamics of DNA with 2-aminopurine: effects of local environment on fluorescenceQ31914649
Conformation and dynamics of abasic sites in DNA investigated by time-resolved fluorescence of 2-aminopurineQ31914672
Kinetic mechanism of damage site recognition and uracil flipping by Escherichia coli uracil DNA glycosylaseQ31931744
AdoMet-dependent methylation, DNA methyltransferases and base flippingQ33941847
Structure of a repair enzyme interrogating undamaged DNA elucidates recognition of damaged DNA.Q34407601
2-Aminopurine fluorescence studies of base stacking interactions at abasic sites in DNA: metal-ion and base sequence effectsQ34673546
A mechanistic perspective on the chemistry of DNA repair glycosylasesQ35171800
A fluorescence-based assay for monitoring helicase activityQ35588416
Femtosecond direct observation of charge transfer between bases in DNAQ35832479
The mechanism of DNA cytosine-5 methylation. Kinetic and mutational dissection of Hhai methyltransferaseQ38302392
Melting of a DNA helix terminus within the active site of a DNA polymeraseQ38303530
Molecular enzymology of the EcoRV DNA-(Adenine-N (6))-methyltransferase: kinetics of DNA binding and bending, kinetic mechanism and linear diffusion of the enzyme on DNA.Q38307807
Binding of EcoP15I DNA methyltransferase to DNA reveals a large structural distortion within the recognition sequenceQ38312746
Exonuclease-polymerase active site partitioning of primer-template DNA strands and equilibrium Mg2+ binding properties of bacteriophage T4 DNA polymeraseQ38335506
Direct real time observation of base flipping by the EcoRI DNA methyltransferaseQ38340696
The role of base flipping in damage recognition and catalysis by T4 endonuclease V.Q38342328
Measurement of the absolute temporal coupling between DNA binding and base flippingQ41648450
Dynamic modes of the flipped-out cytosine during HhaI methyltransferase-DNA interactions in solution.Q42636190
DNA binding and nucleotide flipping by the human DNA repair protein AGT.Q44954472
DNA charge transport: conformationally gated hopping through stacked domainsQ45058545
DNA-mediated charge transport requires conformational motion of the DNA bases: elimination of charge transport in rigid glasses at 77 K.Q45102675
Dynamics of mismatched base pairs in DNA.Q45988899
Electron transfer between bases in double helical DNA.Q46013472
Ultrafast dynamics in DNA-mediated electron transfer: base gating and the role of temperatureQ46051068
Targeted base stacking disruption by the EcoRI DNA methyltransferaseQ46567946
Structure and dynamics of a fluorescent DNA oligomer containing the EcoRI recognition sequence: fluorescence, molecular dynamics, and NMR studiesQ69415455
Cancer epigeneticsQ81611376
P433issue22
P407language of work or nameEnglishQ1860
P304page(s)6953-6960
P577publication date2005-12-09
P1433published inNucleic Acids ResearchQ135122
P1476titleTime-resolved fluorescence of 2-aminopurine as a probe of base flipping in M.HhaI-DNA complexes
P478volume33

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