| scholarly article | Q13442814 |
| P356 | DOI | 10.1093/NAR/26.4.1076 |
| P8608 | Fatcat ID | release_wbodiln2cjb3hbgepzugpi5hbi |
| P3181 | OpenCitations bibliographic resource ID | 5117828 |
| P932 | PMC publication ID | 147370 |
| P698 | PubMed publication ID | 9461471 |
| P2093 | author name string | B Holz | |
| E Weinhold | |||
| S Klimasauskas | |||
| S Serva | |||
| P2860 | cites work | Three-dimensional structure of the adenine-specific DNA methyltransferase M.Taq I in complex with the cofactor S-adenosylmethionine | Q24562671 |
| Cleavage of Structural Proteins during the Assembly of the Head of Bacteriophage T4 | Q25938983 | ||
| A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding | Q25938984 | ||
| Crystal Structure of DNA Photolyase from Escherichia coli | Q27729755 | ||
| The crystal structure of Haelll methyltransferase covalently complexed to DNA: An extrahelical cytosine and rearranged base pairing | Q27729758 | ||
| Novel DNA binding motifs in the DNA repair enzyme endonuclease III crystal structure | Q27729885 | ||
| Structure and function of the multifunctional DNA-repair enzyme exonuclease III | Q27730409 | ||
| Crystal structure of the DNA modifying enzyme beta-glucosyltransferase in the presence and absence of the substrate uridine diphosphoglucose | Q27730858 | ||
| Universal catalytic domain structure of AdoMet-dependent methyltransferases. | Q53012595 | ||
| Three-dimensional structure of a DNA repair enzyme, 3-methyladenine DNA glycosylase II, from Escherichia coli. | Q54584895 | ||
| The nucleotide analog 2-aminopurine as a spectroscopic probe of nucleotide incorporation by the Klenow fragment of Escherichia coli polymerase I and bacteriophage T4 DNA polymerase. | Q54608345 | ||
| Fluorescence and NMR investigations on the ligand binding properties of adenylate kinases. | Q54710050 | ||
| A specific endonuclease from Haemophilus haemolyticus | Q56256626 | ||
| A model for DNA binding and enzyme action derived from crystallographic studies of the TaqI N6-adenine-methyltransferase | Q57663036 | ||
| Using 2-Aminopurine Fluorescence and Mutational Analysis to Demonstrate an Active Role of Bacteriophage T4 DNA Polymerase in Strand Separation Required for 3′ → 5′-Exonuclease Activity | Q62590161 | ||
| Synthetic oligodeoxynucleotides containing modified bases | Q67560439 | ||
| Kinetic and catalytic mechanism of HhaI methyltransferase | Q68962623 | ||
| Kinetic mechanism of DNA binding and DNA-induced dimerization of the Escherichia coli Rep helicase | Q71127765 | ||
| Thermodynamic and kinetic measurements of promoter binding by T7 RNA polymerase | Q71807840 | ||
| Equilibrium and stopped-flow kinetic studies of interaction between T7 RNA polymerase and its promoters measured by protein and 2-aminopurine fluorescence changes | Q71825297 | ||
| Melting and premelting transitions of an oligomer measured by DNA base fluorescence and absorption | Q72146685 | ||
| Crystal structure of a suicidal DNA repair protein: the Ada O6-methylguanine-DNA methyltransferase from E. coli | Q27731281 | ||
| HhaI methyltransferase flips its target base out of the DNA helix | Q27731553 | ||
| Crystal structure of a yeast TBP/TATA-box complex | Q27732067 | ||
| Co-crystal structure of TBP recognizing the minor groove of a TATA element | Q27732068 | ||
| The crystal structure of EcoRV endonuclease and of its complexes with cognate and non-cognate DNA fragments | Q27732162 | ||
| Atomic model of a pyrimidine dimer excision repair enzyme complexed with a DNA substrate: structural basis for damaged DNA recognition | Q27732192 | ||
| Structural basis for the excision repair of alkylation-damaged DNA | Q27733235 | ||
| Enzymatic C5-cytosine methylation of DNA: mechanistic implications of new crystal structures for HhaL methyltransferase-DNA-AdoHcy complexes | Q27733356 | ||
| A nucleotide-flipping mechanism from the structure of human uracil-DNA glycosylase bound to DNA | Q27733802 | ||
| A structural basis for the preferential binding of hemimethylated DNA by HhaI DNA methyltransferase | Q27733930 | ||
| Differential binding of S-adenosylmethionine S-adenosylhomocysteine and Sinefungin to the adenine-specific DNA methyltransferase M.TaqI | Q27734381 | ||
| Structure of pvu II DNA-(cytosine N4) methyltransferase, an example of domain permutation and protein fold assignment | Q27739964 | ||
| DNA containing 4'-thio-2'-deoxycytidine inhibits methylation by HhaI methyltransferase | Q27739981 | ||
| Sequence motifs characteristic of DNA[cytosine-N4]methyltransferases: similarity to adenine and cytosine-C5 DNA-methylases | Q28273541 | ||
| Crystal structure of a CAP-DNA complex: the DNA is bent by 90 degrees | Q28301788 | ||
| Fluorescence studies of nucleotides and polynucleotides. I. Formycin, 2-aminopurine riboside, 2,6-diaminopurine riboside, and their derivatives. | Q34238979 | ||
| Sequence motifs characteristic for DNA [cytosine-N4] and DNA [adenine-N6] methyltransferases. Classification of all DNA methyltransferases | Q34299649 | ||
| Synthesis and hydrolysis of oligodeoxyribonucleotides containing 2-aminopurine | Q34589537 | ||
| HhaI and HpaII DNA methyltransferases bind DNA mismatches, methylate uracil and block DNA repair | Q34746885 | ||
| A fluorescence-based assay for monitoring helicase activity | Q35588416 | ||
| Purification and characterization of two new modification methylases; MClal from Caryophanon latum L and MTaqI from Thermus aquaticus YTI | Q35747622 | ||
| A new approach to the synthesis of a protected 2-aminopurine derivative and its incorporation into oligodeoxynucleotides containing the Eco RI and Bam HI recognition sites | Q36010257 | ||
| Sequence-specific recognition of cytosine C5 and adenine N6 DNA methyltransferases requires different deformations of DNA. | Q37428515 | ||
| Melting of a DNA helix terminus within the active site of a DNA polymerase | Q38303530 | ||
| Influence of 5'-nearest neighbors on the insertion kinetics of the fluorescent nucleotide analog 2-aminopurine by Klenow fragment | Q38315143 | ||
| DNA distortion and base flipping by the EcoRV DNA methyltransferase. A study using interference at dA and T bases and modified deoxynucleosides | Q38349483 | ||
| Real-time fluorescence assay system for gene transcription: simultaneous observation of protein/DNA binding, localized DNA melting, and mRNA production | Q38350586 | ||
| M.HhaI binds tightly to substrates containing mismatches at the target base | Q40393755 | ||
| On base flipping | Q40442261 | ||
| Fluorescence studies of DNA and RNA structure and dynamics | Q41110028 | ||
| Dynamic modes of the flipped-out cytosine during HhaI methyltransferase-DNA interactions in solution. | Q42636190 | ||
| A direct real-time spectroscopic investigation of the mechanism of open complex formation by T7 RNA polymerase | Q42646279 | ||
| Purification, crystallization, and preliminary X-ray diffraction analysis of an M.HhaI-AdoMet complex. | Q45934057 | ||
| Dynamics of mismatched base pairs in DNA. | Q45988899 | ||
| Targeted base stacking disruption by the EcoRI DNA methyltransferase | Q46567946 | ||
| Pre-steady-state kinetic analysis of sequence-dependent nucleotide excision by the 3'-exonuclease activity of bacteriophage T4 DNA polymerase | Q46836231 | ||
| Structure-guided analysis reveals nine sequence motifs conserved among DNA amino-methyltransferases, and suggests a catalytic mechanism for these enzymes | Q48069333 | ||
| P433 | issue | 4 | |
| P407 | language of work or name | English | Q1860 |
| P304 | page(s) | 1076-83 | |
| P577 | publication date | 1998-02-15 | |
| P1433 | published in | Nucleic Acids Research | Q135122 |
| P1476 | title | 2-Aminopurine as a fluorescent probe for DNA base flipping by methyltransferases | |
| P478 | volume | 26 |
| Q38424283 | 2-Aminopurine as a fluorescent probe of DNA conformation and the DNA-enzyme interface |
| Q89496225 | 4-Cyanoindole-2'-deoxyribonucleoside (4CIN): A Universal Fluorescent Nucleoside Analogue |
| Q64269033 | 4-Cyanoindole-2'-deoxyribonucleoside as a Dual Fluorescence and Infrared Probe of DNA Structure and Dynamics |
| Q24791512 | 8-vinyl-deoxyadenosine, an alternative fluorescent nucleoside analog to 2'-deoxyribosyl-2-aminopurine with improved properties |
| Q30665106 | A DNA-binding peptide from a phage display library |
| Q36374176 | A QM/QTAIM detailed look at the Watson-Crick↔wobble tautomeric transformations of the 2-aminopurine·pyrimidine mispairs |
| Q33938784 | A dual role for substrate S-adenosyl-L-methionine in the methylation reaction with bacteriophage T4 Dam DNA-[N6-adenine]-methyltransferase |
| Q34030409 | A theoretical examination of the factors controlling the catalytic efficiency of the DNA-(adenine-N6)-methyltransferase from Thermus aquaticus |
| Q38351626 | ADAR2 A-->I editing: site selectivity and editing efficiency are separate events |
| Q33941847 | AdoMet-dependent methylation, DNA methyltransferases and base flipping |
| Q33647987 | An Exonuclease I-Based Quencher-Free Fluorescent Method Using DNA Hairpin Probes for Rapid Detection of MicroRNA. |
| Q36290829 | Applying 6-methylisoxanthopterin-enhanced fluorescence to examine protein-DNA interactions in the picomolar range |
| Q33938829 | Association of an RNA kissing complex analyzed using 2-aminopurine fluorescence |
| Q35805058 | Bacteriophage T2Dam and T4Dam DNA-[N6-adenine]-methyltransferases |
| Q38295204 | Bacteriophage T4 Dam DNA-[N6-adenine]methyltransferase. Kinetic evidence for a catalytically essential conformational change in the ternary complex |
| Q44534317 | Bacteriophage T4Dam (DNA-(adenine-N6)-methyltransferase): evidence for two distinct stages of methylation under single turnover conditions |
| Q34478240 | Bacteriophage strain typing by rapid single molecule analysis. |
| Q37273630 | Base extrusion is found at helical junctions between right- and left-handed forms of DNA and RNA |
| Q46799723 | Base flipping in nucleotide excision repair |
| Q34587622 | Beyond Watson and Crick: DNA methylation and molecular enzymology of DNA methyltransferases |
| Q39724595 | Chemical display of thymine residues flipped out by DNA methyltransferases |
| Q34775305 | Chemical mapping of cytosines enzymatically flipped out of the DNA helix |
| Q35965530 | Conserved motif VIII of murine DNA methyltransferase Dnmt3a is essential for methylation activity |
| Q36280616 | Cooperative cluster formation, DNA bending and base-flipping by O6-alkylguanine-DNA alkyltransferase |
| Q38363738 | Cyclobutylpyrimidine dimer base flipping by DNA photolyase |
| Q90250166 | DNA base flipping analytical pipeline |
| Q36868466 | DNA base flipping by both members of the PspGI restriction-modification system |
| Q24810294 | DNA bending by M.EcoKI methyltransferase is coupled to nucleotide flipping. |
| Q37977119 | DNA methyltransferases: mechanistic models derived from kinetic analysis |
| Q38347104 | DNA mismatch-specific base flipping by a bisacridine macrocycle |
| Q24538026 | DNA nicking by HinP1I endonuclease: bending, base flipping and minor groove expansion |
| Q37698622 | Diversity of DNA methyltransferases that recognize asymmetric target sequences |
| Q42937360 | Dynamics of RNA modification by a multi-site-specific tRNA methyltransferase |
| Q36478079 | Engineering the DNA cytosine-5 methyltransferase reaction for sequence-specific labeling of DNA |
| Q37221703 | Exciplexes and conical intersections lead to fluorescence quenching in π-stacked dimers of 2-aminopurine with natural purine nucleobases. |
| Q89762224 | Excited State Dynamics of 8-Vinyldeoxyguanosine In Aqueous Solution Studied by Time-Resolved Fluorescence Spectroscopy and Quantum Mechanical Calculations |
| Q41903255 | Fluorescence intensity decays of 2-aminopurine solutions: lifetime distribution approach |
| Q42036000 | Fluorescence probing of aminofluorene-induced conformational heterogeneity in DNA duplexes |
| Q91923594 | Fluorescent 5-Pyrimidine and 8-Purine Nucleosides Modified with an N-Unsubstituted 1,2,3-Triazol-4-yl Moiety |
| Q37835020 | Fluorescent DNA-based enzyme sensors |
| Q29031668 | Fluorescent probing for RNA molecules by an unnatural base-pair system |
| Q52571195 | Functional analysis of amino acid residues at the dimerisation interface of KpnI DNA methyltransferase. |
| Q38354607 | Highly efficient incorporation of the fluorescent nucleotide analogs tC and tCO by Klenow fragment |
| Q38324707 | Identification of the binding site for the extrahelical target base in N6-adenine DNA methyltransferases by photo-cross-linking with duplex oligodeoxyribonucleotides containing 5-iodouracil at the target position |
| Q35171647 | Lesion search and recognition by thymine DNA glycosylase revealed by single molecule imaging. |
| Q42105586 | Long-distance placement of substrate RNA by H/ACA proteins |
| Q36438418 | Mechanistic insights into editing-site specificity of ADARs |
| Q39036341 | Methyltransferase-Directed Labeling of Biomolecules and its Applications. |
| Q36647490 | Modelling the biomechanical properties of DNA using computer simulation |
| Q38895367 | Molecular encryption and reconfiguration for remodeling of dynamic hydrogels |
| Q44790885 | New nucleoside analogs from 2-amino-9-(beta-D-ribofuranosyl)purine |
| Q38300220 | Nucleotide flipping by restriction enzymes analyzed by 2-aminopurine steady-state fluorescence |
| Q42532919 | Nucleotide flips determine the specificity of the Ecl18kI restriction endonuclease. |
| Q42599326 | Observing an induced-fit mechanism during sequence-specific DNA methylation |
| Q33616883 | Oligodeoxynucleotides containing conformationally constrained abasic sites: a UV and fluorescence spectroscopic investigation on duplex stability and structure |
| Q57267693 | On the Substrate Specificity of DNA Methyltransferases |
| Q42928086 | Photoinduced Electron Transfer Occurs between 2-Aminopurine and the DNA Nucleic Acid Monophosphates: Results from Cyclic Voltammetry and Fluorescence Quenching |
| Q80039117 | Photophysics and X-ray structure of crystalline 2-aminopurine |
| Q24794135 | Probing a rate-limiting step by mutational perturbation of AdoMet binding in the HhaI methyltransferase |
| Q77343538 | Protein-mediated base flipping |
| Q28362019 | Protonation studies and multivariate curve resolution on oligodeoxynucleotides carrying the mutagenic base 2-aminopurine |
| Q32148611 | Real time fluorescence analysis of the RecA filament: implications of base pair fluidity in repeat realignment. |
| Q41089126 | Recognition of DNA/RNA bulges by antimicrobial and antitumor metallohelices. |
| Q38315517 | Reconciling structure and function in HhaI DNA cytosine-C-5 methyltransferase |
| Q42140223 | Reversibly locked thionucleobase pairs in DNA to study base flipping enzymes |
| Q38361321 | Role of base flipping in specific recognition of damaged DNA by repair enzymes. |
| Q37946239 | Screening for compounds that modulate epigenetic regulation of the transcriptome: an overview |
| Q48547621 | Selective alkylation of T-T mismatched DNA using vinyldiaminotriazine-acridine conjugate |
| Q36859253 | Selective recognition of pyrimidine-pyrimidine DNA mismatches by distance-constrained macrocyclic bis-intercalators |
| Q46792003 | Sequence dependence in base flipping: experimental and computational studies |
| Q34172492 | Sequence dependence of energy transfer in DNA oligonucleotides |
| Q42410846 | Shape-selective recognition of DNA abasic sites by metallohelices: inhibition of human AP endonuclease 1. |
| Q90332486 | Site-Specific Fluorescence Dynamics To Probe Polar Arrest by Fob1 in Replication Fork Barrier Sequences |
| Q38296523 | Site-specific variations in RNA folding thermodynamics visualized by 2-aminopurine fluorescence |
| Q98945056 | Stabilization of human telomeric RNA G-quadruplex by the water-compatible optically pure and biologically-active metallohelices |
| Q46636691 | Structural heterogeneity in DNA: temperature dependence of 2-aminopurine fluorescence in dinucleotides |
| Q37168010 | Structure and substrate recognition of the Escherichia coli DNA adenine methyltransferase |
| Q36598928 | Structure, function and mechanism of exocyclic DNA methyltransferases |
| Q39584589 | Substrate binding in vitro and kinetics of RsrI [N6-adenine] DNA methyltransferase |
| Q80285913 | Synthesis of S-adenosyl-L-methionine analogs and their use for sequence-specific transalkylation of DNA by methyltransferases |
| Q36059494 | T4 DNA ligase is more than an effective trap of cyclized dsDNA |
| Q43409472 | The coupling of tight DNA binding and base flipping: identification of a conserved structural motif in base flipping enzymes |
| Q38302392 | The mechanism of DNA cytosine-5 methylation. Kinetic and mutational dissection of Hhai methyltransferase |
| Q27678979 | The recognition domain of the methyl-specific endonuclease McrBC flips out 5-methylcytosine |
| Q24810605 | Time-resolved fluorescence of 2-aminopurine as a probe of base flipping in M.HhaI-DNA complexes |
| Q35001867 | Time-resolved fluorescence studies of nucleotide flipping by restriction enzymes. |
| Q52351418 | Transposase-DNA Complex Structures Reveal Mechanisms for Conjugative Transposition of Antibiotic Resistance. |
| Q27645184 | Two alternative conformations of S-adenosyl-L-homocysteine bound to Escherichia coli DNA adenine methyltransferase and the implication of conformational changes in regulating the catalytic cycle |
| Q30925018 | Unusual 2-aminopurine fluorescence from a complex of DNA and the EcoKI methyltransferase |
| Q39235478 | Whether 2-aminopurine induces incorporation errors at the DNA replication? A quantum-mechanical answer on the actual biological issue. |
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