| review article | Q7318358 |
| scholarly article | Q13442814 |
| P50 | author | Peer Bork | Q7160367 |
| Pedro Beltrao | Q41044831 | ||
| Nevan Krogan | Q28450952 | ||
| Vera van Noort | Q28833275 | ||
| P2860 | cites work | Structural evolution of the protein kinase-like superfamily | Q21145694 |
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| Catalytic and glycan-binding abilities of ppGalNAc-T2 are regulated by acetylation | Q57195377 | ||
| Phosphorylation sites of higher stoichiometry are more conserved | Q57274690 | ||
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| Proteomic analysis of acetylation in thermophilic Geobacillus kaustophilus | Q43018426 | ||
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| The acetylproteome of Gram-positive model bacterium Bacillus subtilis. | Q50017698 | ||
| Acetylation of conserved lysines in the catalytic core of cyclin-dependent kinase 9 inhibits kinase activity and regulates transcription | Q24310643 | ||
| The histone H4 acetyltransferase MOF uses a C2HC zinc finger for substrate recognition | Q24522499 | ||
| An evolutionary proteomics approach identifies substrates of the cAMP-dependent protein kinase | Q24536017 | ||
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| SIRT6 regulates TNF-α secretion through hydrolysis of long-chain fatty acyl lysine | Q24631433 | ||
| Cascades of multisite phosphorylation control Sic1 destruction at the onset of S phase | Q24633046 | ||
| Systematic and quantitative assessment of the ubiquitin-modified proteome | Q24634631 | ||
| Origin and function of ubiquitin-like proteins | Q24651141 | ||
| Structure and in vivo requirement of the yeast Spt6 SH2 domain | Q27654851 | ||
| Lysine acetylation targets protein complexes and co-regulates major cellular functions | Q27860589 | ||
| Essential functions of protein tyrosine phosphatases PTP2 and PTP3 and RIM11 tyrosine phosphorylation in Saccharomyces cerevisiae meiosis and sporulation | Q27932259 | ||
| Systematic functional prioritization of protein posttranslational modifications | Q27936051 | ||
| A mechanism for cell-cycle regulation of MAP kinase signaling in a yeast differentiation pathway | Q27936432 | ||
| Bayesian modeling of the yeast SH3 domain interactome predicts spatiotemporal dynamics of endocytosis proteins | Q27938417 | ||
| Phylogenetic classification of prokaryotic and eukaryotic Sir2-like proteins | Q28139564 | ||
| A proteome-wide, quantitative survey of in vivo ubiquitylation sites reveals widespread regulatory roles | Q28247080 | ||
| Proteasome-independent functions of ubiquitin in endocytosis and signaling | Q28282959 | ||
| Prokaryotic ubiquitin-like protein (Pup) proteome of Mycobacterium tuberculosis [corrected] | Q28487609 | ||
| Comparison of substrate specificity of the ubiquitin ligases Nedd4 and Nedd4-2 using proteome arrays | Q28566104 | ||
| Acetylation of metabolic enzymes coordinates carbon source utilization and metabolic flux | Q29615102 | ||
| Global analysis of Cdk1 substrate phosphorylation sites provides insights into evolution | Q29616847 | ||
| Nonproteolytic functions of ubiquitin in cell signaling | Q29617294 | ||
| Reading protein modifications with interaction domains | Q29622877 | ||
| Linear Motif Atlas for Phosphorylation-Dependent Signaling | Q30002322 | ||
| Co-evolution of transcriptional and post-translational cell-cycle regulation | Q30002376 | ||
| SH3 interactome conserves general function over specific form. | Q30009888 | ||
| Network evolution: rewiring and signatures of conservation in signaling | Q30010152 | ||
| MOTIPS: automated motif analysis for predicting targets of modular protein domains | Q30156864 | ||
| Deciphering a global network of functionally associated post-translational modifications | Q36171164 | ||
| Characterization and Prediction of Protein Phosphorylation Hotspots in Arabidopsis thaliana | Q36208275 | ||
| Proteome-wide analysis of lysine acetylation suggests its broad regulatory scope in Saccharomyces cerevisiae | Q36386946 | ||
| Regulation of yeast central metabolism by enzyme phosphorylation | Q36493250 | ||
| Evolution of the phospho-tyrosine signaling machinery in premetazoan lineages | Q36743438 | ||
| Cross-regulation of histone modifications | Q36994157 | ||
| Lysine acetylation is a highly abundant and evolutionarily conserved modification in Escherichia coli | Q37080670 | ||
| Reversible acetylation regulates acetate and propionate metabolism in Mycobacterium smegmatis | Q37197388 | ||
| Not just for Eukarya anymore: protein glycosylation in Bacteria and Archaea | Q37241376 | ||
| Evolution of protein phosphatases in plants and animals | Q37355920 | ||
| Global analysis of phosphorylation and ubiquitylation cross-talk in protein degradation | Q37404493 | ||
| Histone methylation and ubiquitination with their cross-talk and roles in gene expression and stability | Q37445597 | ||
| Decoding signalling networks by mass spectrometry-based proteomics | Q37749492 | ||
| Phosphorylation meets nuclear import: a review | Q37823682 | ||
| The natural history of ubiquitin and ubiquitin-related domains | Q37971572 | ||
| Differential network biology | Q37976573 | ||
| Proteomic investigations reveal a role for RNA processing factor THRAP3 in the DNA damage response | Q39378487 | ||
| A genomic survey of HECT ubiquitin ligases in eukaryotes reveals independent expansions of the HECT system in several lineages | Q39438764 | ||
| Global identification of modular cullin-RING ligase substrates | Q39462405 | ||
| System-wide temporal characterization of the proteome and phosphoproteome of human embryonic stem cell differentiation | Q39575648 | ||
| ATM-dependent and -independent dynamics of the nuclear phosphoproteome after DNA damage | Q39622746 | ||
| Spatial exclusivity combined with positive and negative selection of phosphorylation motifs is the basis for context-dependent mitotic signaling | Q30414432 | ||
| Natural history of the E1-like superfamily: implication for adenylation, sulfur transfer, and ubiquitin conjugation | Q30855071 | ||
| Sir2-dependent activation of acetyl-CoA synthetase by deacetylation of active lysine | Q30876890 | ||
| Coding limits on the number of transcription factors | Q33258039 | ||
| Specificity and evolvability in eukaryotic protein interaction networks | Q33274191 | ||
| Comparative genomics of protists: new insights into the evolution of eukaryotic signal transduction and gene regulation | Q33284795 | ||
| Comparative genomics of transcription factors and chromatin proteins in parasitic protists and other eukaryotes | Q33303270 | ||
| Anatomy of the E2 ligase fold: implications for enzymology and evolution of ubiquitin/Ub-like protein conjugation | Q33319924 | ||
| Protein complex evolution does not involve extensive network rewiring. | Q33361269 | ||
| A specificity map for the PDZ domain family | Q33373127 | ||
| Cooperativity within proximal phosphorylation sites is revealed from large-scale proteomics data | Q33526509 | ||
| Deciphering protein kinase specificity through large-scale analysis of yeast phosphorylation site motifs | Q33757668 | ||
| Measuring the evolutionary rewiring of biological networks | Q33799118 | ||
| Site-specific phosphorylation dynamics of the nuclear proteome during the DNA damage response | Q33883063 | ||
| The origin and early evolution of eukaryotes in the light of phylogenomics | Q33965955 | ||
| Lysine propionylation and butyrylation are novel post-translational modifications in histones | Q34027794 | ||
| Phosphorylation in protein-protein binding: effect on stability and function. | Q34095295 | ||
| Enigmatic variations: divergent modes of regulating eukaryotic DNA replication | Q34278873 | ||
| Phosphorylation of proteins by inositol pyrophosphates | Q34377316 | ||
| Linear motifs: evolutionary interaction switches. | Q34424868 | ||
| Dual coordination of post translational modifications in human protein networks | Q34625280 | ||
| Understanding eukaryotic linear motifs and their role in cell signaling and regulation. | Q34782197 | ||
| Extensive DNA-binding specificity divergence of a conserved transcription regulator | Q34938350 | ||
| Prolyl hydroxylation- and glycosylation-dependent functions of Skp1 in O2-regulated development of Dictyostelium | Q34985082 | ||
| Cell regulation: determined to signal discrete cooperation | Q35002154 | ||
| Rampant purifying selection conserves positions with posttranslational modifications in human proteins | Q35023102 | ||
| Acetyl-CoA induces cell growth and proliferation by promoting the acetylation of histones at growth genes. | Q35027765 | ||
| Ubiquitination, phosphorylation and acetylation: the molecular basis for p53 regulation | Q35089377 | ||
| A mechanism for the evolution of phosphorylation sites | Q35562896 | ||
| Differential lysine acetylation profiles of Erwinia amylovora strains revealed by proteomics | Q35566272 | ||
| Proteasomes and protein conjugation across domains of life | Q35792807 | ||
| Cross-talk between phosphorylation and lysine acetylation in a genome-reduced bacterium. | Q35802188 | ||
| Regulatory evolution in proteins by turnover and lineage-specific changes of cyclin-dependent kinase consensus sites | Q36140799 | ||
| Protein abundance is key to distinguish promiscuous from functional phosphorylation based on evolutionary information | Q36153874 | ||
| P275 | copyright license | Creative Commons Attribution | Q6905323 |
| P6216 | copyright status | copyrighted | Q50423863 |
| P407 | language of work or name | English | Q1860 |
| P921 | main subject | regulation of gene expression | Q411391 |
| proteomics | Q471857 | ||
| molecular evolution | Q856529 | ||
| post-translational protein modification | Q898362 | ||
| protein evolution | Q59870539 | ||
| P304 | page(s) | 714 | |
| P577 | publication date | 2013-01-01 | |
| 2013-12-22 | |||
| P1433 | published in | Molecular Systems Biology | Q2261043 |
| P1476 | title | Evolution and functional cross-talk of protein post-translational modifications | |
| P478 | volume | 9 |
| Q41973906 | A "fuzzy"-logic language for encoding multiple physical traits in biomolecules |
| Q35692123 | A Phosphoproteomic Comparison of B-RAFV600E and MKK1/2 Inhibitors in Melanoma Cells |
| Q40110578 | A study of bias and increasing organismal complexity from their post-translational modifications and reaction site interplays |
| Q89655147 | Adaptive selection in the evolution of programmed cell death-1 and its ligands in vertebrates |
| Q47276709 | Allosteric Control of a Plant Receptor Kinase through S-Glutathionylation |
| Q36263765 | An Asymmetrically Balanced Organization of Kinases versus Phosphatases across Eukaryotes Determines Their Distinct Impacts |
| Q42100110 | Ancestral resurrection reveals evolutionary mechanisms of kinase plasticity |
| Q38273195 | And then there were two. |
| Q89531083 | BET proteins: Investigating BRDT as a potential target for male contraception |
| Q38272130 | Bioinformatics approaches for the functional interpretation of protein lists: from ontology term enrichment to network analysis |
| Q39215261 | Building and exploring an integrated human kinase network: global organization and medical entry points. |
| Q53265331 | Ca2+ -independent sortase-A exhibits high selective protein ligation activity in the cytoplasm of Escherichia coli. |
| Q88069203 | Capturing Post-Translational Modification-Triggered Protein-Protein Interactions Using Dual Noncanonical Amino Acid Mutagenesis |
| Q59793918 | Co-occurring KRAS mutation/LKB1 loss in non-small cell lung cancer cells results in enhanced metabolic activity susceptible to caloric restriction: an in vitro integrated multilevel approach |
| Q33688357 | Co-occurring protein phosphorylation are functionally associated |
| Q39618479 | Comprehensive identification of arginine methylation in primary T cells reveals regulatory roles in cell signalling |
| Q42777346 | Controllability of protein-protein interaction phosphorylation-based networks: Participation of the hub 14-3-3 protein family |
| Q36315191 | Correlated duplications and losses in the evolution of palmitoylation writer and eraser families |
| Q101476452 | Deciphering cell-cell interactions and communication from gene expression |
| Q35488841 | Detecting functional divergence after gene duplication through evolutionary changes in posttranslational regulatory sequences |
| Q58789775 | Discerning evolutionary trends in post-translational modification and the effect of intrinsic disorder: Analysis of methylation, acetylation and ubiquitination sites in human proteins |
| Q55218904 | Dissecting Structure-Encoded Determinants of Allosteric Cross-Talk between Post-Translational Modification Sites in the Hsp90 Chaperones. |
| Q64886147 | Effects of α-tubulin acetylation on microtubule structure and stability. |
| Q35998418 | Engineering of Methylation State Specific 3xMBT Domain Using ELISA Screening |
| Q38754752 | Exploring the diversity of protein modifications: special bacterial phosphorylation systems |
| Q50001638 | Features and regulation of non-enzymatic post-translational modifications. |
| Q47232518 | Genetically Incorporating Two Distinct Post-translational Modifications into One Protein Simultaneously. |
| Q38602104 | Genomic Determinants of Protein Abundance Variation in Colorectal Cancer Cells. |
| Q40503852 | Graph theoretic network analysis reveals protein pathways underlying cell death following neurotropic viral infection |
| Q34312953 | Human germline and pan-cancer variomes and their distinct functional profiles |
| Q63044066 | Improved measures for evolutionary conservation that exploit taxonomy distances |
| Q26779741 | Insights into Eukaryotic Translation Initiation from Mass Spectrometry of Macromolecular Protein Assemblies |
| Q38206761 | Insights into molecular evolution from yeast genomics |
| Q34377093 | Integrating phosphoproteomics in systems biology |
| Q35588513 | Investigating the effect of remote ischaemic preconditioning on biomarkers of stress and injury-related signalling in patients having isolated coronary artery bypass grafting or aortic valve replacement using cardiopulmonary bypass: study protocol f |
| Q38407314 | KinView: a visual comparative sequence analysis tool for integrated kinome research |
| Q38695269 | Kinase activity ranking using phosphoproteomics data (KARP) quantifies the contribution of protein kinases to the regulation of cell viability. |
| Q37258783 | Loss of the SUMO protease Ulp2 triggers a specific multichromosome aneuploidy. |
| Q27001576 | Mass spectrometry-based detection and assignment of protein posttranslational modifications |
| Q89081239 | Mcl-1 Phosphorylation without Degradation Mediates Sensitivity to HDAC Inhibitors by Liberating BH3-Only Proteins |
| Q41352354 | Methionine residues around phosphorylation sites are preferentially oxidized in vivo under stress conditions |
| Q39103838 | Mitotic phosphotyrosine network analysis reveals that tyrosine phosphorylation regulates Polo-like kinase 1 (PLK1). |
| Q30152891 | New OprM structure highlighting the nature of the N-terminal anchor |
| Q41269525 | Nonspecific yet decisive: Ubiquitination can affect the native-state dynamics of the modified protein |
| Q36162600 | Nonsynonymous Single-Nucleotide Variations on Some Posttranslational Modifications of Human Proteins and the Association with Diseases |
| Q48356662 | Optimizing High-Resolution Mass Spectrometry for the Identification of Low-Abundance Post-Translational Modifications of Intact Proteins. |
| Q37549558 | Osteopontin Bridging Innate and Adaptive Immunity in Autoimmune Diseases. |
| Q43214954 | PTMcode v2: a resource for functional associations of post-translational modifications within and between proteins |
| Q38849401 | Persistent human Borna disease virus infection modifies the acetylome of human oligodendroglia cells towards higher energy and transporter levels |
| Q30354536 | Phosphoproteomics in the Age of Rapid and Deep Proteome Profiling. |
| Q49979433 | Phosphoproteomics-Based Profiling of Kinase Activities in Cancer Cells. |
| Q38216962 | Phosphorylation-dependent regulation of plant chromatin and chromatin-associated proteins. |
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| Q39458855 | Post-translational regulation of antiviral innate signaling. |
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| Q30378436 | Prediction of Functionally Important Phospho-Regulatory Events in Xenopus laevis Oocytes. |
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