MOTIPS: automated motif analysis for predicting targets of modular protein domains

scientific article

MOTIPS: automated motif analysis for predicting targets of modular protein domains is …
instance of (P31):
scholarly articleQ13442814

External links are
P8978DBLP publication IDjournals/bmcbi/LamKMTSTSG10
P6179Dimensions Publication ID1050596416
P356DOI10.1186/1471-2105-11-243
P8608Fatcat IDrelease_6hjwh5cdjzhujjflnvhmpkar24
P932PMC publication ID2882932
P698PubMed publication ID20459839
P5875ResearchGate publication ID44589597

P50authorMark Bender GersteinQ6766711
Michael P. SnyderQ28924918
P2093author name stringBenjamin E Turk
Sachdev S Sidhu
Hugo Y K Lam
Janine Mok
Philip M Kim
Raffi Tonikian
P2860cites workAmino acid substitution matrices from protein blocksQ24563220
MUSCLE: multiple sequence alignment with high accuracy and high throughputQ24613456
Scansite 2.0: Proteome-wide prediction of cell signaling interactions using short sequence motifsQ24671990
ELM server: A new resource for investigating short functional sites in modular eukaryotic proteinsQ24672414
Protein interaction networks by proteome peptide scanningQ24804216
Comparative genomics and disorder prediction identify biologically relevant SH3 protein interactionsQ24813518
The protein kinase family: conserved features and deduced phylogeny of the catalytic domainsQ27860528
Protein modules and signalling networksQ27860694
A combined experimental and computational strategy to define protein interaction networks for peptide recognition modulesQ27930492
Regulation of the actin cytoskeleton organization in yeast by a novel serine/threonine kinase Prk1pQ27934148
Bayesian modeling of the yeast SH3 domain interactome predicts spatiotemporal dynamics of endocytosis proteinsQ27938417
Optimization of specificity in a cellular protein interaction network by negative selectionQ27940190
Assembly of Cell Regulatory Systems Through Protein Interaction DomainsQ28155799
Where did the BLOSUM62 alignment score matrix come from?Q28275059
A Bayesian Networks Approach for Predicting Protein-Protein Interactions from Genomic DataQ29395063
Automatic clustering of orthologs and in-paralogs from pairwise species comparisonsQ29615401
The Structure and Function of Proline Recognition DomainsQ30164765
A motif-based profile scanning approach for genome-wide prediction of signaling pathwaysQ30168316
AL2CO: calculation of positional conservation in a protein sequence alignment.Q30328587
Accurate prediction of solvent accessibility using neural networks-based regression.Q30342423
Data mining in bioinformatics using WekaQ30920089
A rapid method for determining protein kinase phosphorylation specificityQ31155056
Identifying specificity profiles for peptide recognition modules from phage-displayed peptide librariesQ33286527
Deciphering protein kinase specificity through large-scale analysis of yeast phosphorylation site motifsQ33757668
Prediction of disordered regions in proteins from position specific score matricesQ34272402
The DISOPRED server for the prediction of protein disorderQ34546645
Repeating sequences and gene duplication in proteinsQ70366066
Using substitution probabilities to improve position-specific scoring matricesQ71357582
P407language of work or nameEnglishQ1860
P921main subjectautomationQ184199
P304page(s)243
P577publication date2010-05-11
P1433published inBMC BioinformaticsQ4835939
P1476titleMOTIPS: automated motif analysis for predicting targets of modular protein domains
P478volume11

Reverse relations

cites work (P2860)
Q34419267CPhos: a program to calculate and visualize evolutionarily conserved functional phosphorylation sites
Q38023077Computational analysis of interactomes: current and future perspectives for bioinformatics approaches to model the host-pathogen interaction space.
Q38010661Computational structural analysis of protein interactions and networks
Q30002301DoReMi: context-based prioritization of linear motif matches
Q27006986Elucidation of the binding preferences of peptide recognition modules: SH3 and PDZ domains
Q26823238Evolution and functional cross-talk of protein post-translational modifications
Q30008743Exhaustive search of linear information encoding protein-peptide recognition
Q30010258Identification of specificity determining residues in peptide recognition domains using an information theoretic approach applied to large-scale binding maps
Q30010103Interfacial water molecules in SH3 interactions: Getting the full picture on polyproline recognition by protein-protein interaction domains
Q24607812MUSI: an integrated system for identifying multiple specificity from very large peptide or nucleic acid data sets
Q33799118Measuring the evolutionary rewiring of biological networks
Q24620727Minimotif Miner 3.0: database expansion and significantly improved reduction of false-positive predictions from consensus sequences
Q30010152Network evolution: rewiring and signatures of conservation in signaling
Q55518770PSSMSearch: a server for modeling, visualization, proteome-wide discovery and annotation of protein motif specificity determinants.
Q30009023Predicting physiologically relevant SH3 domain mediated protein-protein interactions in yeast
Q36295738Prediction of GCRV virus-host protein interactome based on structural motif-domain interactions
Q35821378Rapid Identification of Protein Kinase Phosphorylation Site Motifs Using Combinatorial Peptide Libraries
Q41581857Reciprocal phosphorylation of yeast glycerol-3-phosphate dehydrogenases in adaptation to distinct types of stress
Q34440056TORC2-dependent protein kinase Ypk1 phosphorylates ceramide synthase to stimulate synthesis of complex sphingolipids
Q35981072The Functional Human C-Terminome
Q64913346The carboxy-terminus, a key regulator of protein function.
Q38019706Uncovering new aspects of protein interactions through analysis of specificity landscapes in peptide recognition domains

Search more.