Molecular epidemiology and genomics of group A Streptococcus

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Molecular epidemiology and genomics of group A Streptococcus is …
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scholarly articleQ13442814
review articleQ7318358

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P356DOI10.1016/J.MEEGID.2014.10.011
P8608Fatcat IDrelease_pgif66inejcltg425o3t7xsomi
P3181OpenCitations bibliographic resource ID1182721
P932PMC publication ID4416080
P698PubMed publication ID25460818
P5875ResearchGate publication ID267761329

P50authorSonia AgrawalQ56897311
Amol C ShettyQ58578170
Scott V NguyenQ42316948
P2093author name stringHervé Tettelin
Debra E Bessen
W Michael McShan
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Genome sequence of an M3 strain of Streptococcus pyogenes reveals a large-scale genomic rearrangement in invasive strains and new insights into phage evolutionQ22065771
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Evolutionary Origin and Emergence of a Highly Successful Clone of Serotype M1 Group A Streptococcus Involved Multiple Horizontal Gene Transfer EventsQ22066116
Genome Sequence of a Serotype M28 Strain of Group A Streptococcus: Potential New Insights into Puerperal Sepsis and Bacterial Disease SpecificityQ22066118
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Group A Streptococcus produce pilus-like structures containing protective antigens and Lancefield T antigensQ24534879
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DNase Sda1 provides selection pressure for a switch to invasive group A streptococcal infection.Q51185403
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Strain Prevalence, Rather than Innate Virulence Potential, Is the Major Factor Responsible for an Increase in Serious Group A Streptococcus InfectionsQ57080432
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Structural heterogeneity of the emm gene cluster in group A streptococciQ72833201
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Virulence profiling of Streptococcus dysgalactiae subspecies equisimilis isolated from infected humans reveals 2 distinct genetic lineages that do not segregate with their phenotypes or propensity to cause diseasesQ34625576
Streptococcus pyogenes pili promote pharyngeal cell adhesion and biofilm formationQ34628182
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Transcriptional regulation of a bacteriophage encoded extracellular DNase (Spd-3) by Rgg in Streptococcus pyogenesQ34684261
Distinct signatures of diversifying selection revealed by genome analysis of respiratory tract and invasive bacterial populations.Q34720867
An insert in the covS gene distinguishes a pharyngeal and a blood isolate of Streptococcus pyogenes found in the same individualQ34747056
Genome sequence of a nephritogenic and highly transformable M49 strain of Streptococcus pyogenesQ34838508
Prophage induction and expression of prophage-encoded virulence factors in group A Streptococcus serotype M3 strain MGAS315.Q34943643
Purification and Characterization of Streptin, a Type A1 Lantibiotic Produced by Streptococcus pyogenesQ34986984
The fundamental contribution of phages to GAS evolution, genome diversification and strain emergenceQ34990709
Evolution and global dissemination of macrolide-resistant group A streptococciQ35023314
Survey of emm gene sequences from pharyngeal Streptococcus pyogenes isolates collected in Spain and their relationship with erythromycin susceptibility.Q35027773
Peroxide responsive regulator PerR of group A Streptococcus is required for the expression of phage-associated DNase Sda1 under oxidative stress.Q35061378
Analysis of the superantigenic activity of mutant and allelic forms of streptococcal pyrogenic exotoxin AQ35474129
Conservation of the C5a peptidase genes in group A and B streptococci.Q35501963
Whole-genome association study on tissue tropism phenotypes in group A Streptococcus.Q35598766
Population biology of Gram-positive pathogens: high-risk clones for dissemination of antibiotic resistanceQ35622545
Role of streptococcal T antigens in superficial skin infectionQ35634675
Polymorphisms in regulator of protease B (RopB) alter disease phenotype and strain virulence of serotype M3 group A StreptococcusQ35662035
Phage 3396 from a Streptococcus dysgalactiae subsp. equisimilis pathovar may have its origins in streptococcus pyogenesQ35759505
Evolution of the core and pan-genome of Streptococcus: positive selection, recombination, and genome compositionQ35906447
Population genomics: an investigative tool for epidemicsQ36044610
Architecture of the vir regulons of group A streptococci parallels opacity factor phenotype and M protein classQ36115416
Analysis of a Streptococcus pyogenes puerperal sepsis cluster by use of whole-genome sequencingQ36118655
Phylomark, a tool to identify conserved phylogenetic markers from whole-genome alignmentsQ36155743
Growth phase-dependent modulation of Rgg binding specificity in Streptococcus pyogenesQ36156301
Complete genome sequence of Streptococcus pyogenes M1 476, isolated from a patient with streptococcal toxic shock syndrome.Q36276363
The Streptococcus pyogenes serotype M49 Nra-Ralp3 transcriptional regulatory network and its control of virulence factor expression from the novel eno ralp3 epf sagA pathogenicity regionQ36314024
Scarlet fever epidemic, Hong Kong, 2011.Q36318423
Replacing and additive horizontal gene transfer in StreptococcusQ36320957
Draft genome sequences of two Streptococcus pyogenes strains involved in abnormal sharp raised scarlet fever in China, 2011Q36362787
Plasmid-Borne erm(T) from invasive, macrolide-resistant Streptococcus pyogenes strainsQ36482796
Genome characterization and population genetic structure of the zoonotic pathogen, Streptococcus canisQ36521441
Multiple strains of Streptococcus pyogenes in skin sores of aboriginal AustraliansQ36522596
Independent evolution of competence regulatory cascades in streptococci?Q36527190
Neutrophil extracellular traps: casting the NET over pathogenesis.Q36701654
Phage-associated mutator phenotype in group A streptococcusQ36933187
Evidence consistent with horizontal transfer of the gene (emm12) encoding serotype M12 protein between group A and group G pathogenic streptococciQ36944865
Draft Genome Sequence of Methicillin-Susceptible Staphylococcus aureus Strain 06BA18369, a Pathogen Associated with Skin and Soft Tissue Infections in Northern Saskatchewan, CanadaQ36962937
Interspecies communication among commensal and pathogenic streptococciQ37074676
Role of hyaluronidase in subcutaneous spread and growth of group A streptococcusQ24537562
Multilocus sequence typing of Streptococcus pyogenes and the relationships between emm type and cloneQ24548700
Multilocus sequence typing of Streptococcus pyogenes representing most known emm types and distinctions among subpopulation genetic structuresQ24564671
Molecular complexity of successive bacterial epidemics deconvoluted by comparative pathogenomicsQ24625740
CRISPR RNA maturation by trans-encoded small RNA and host factor RNase IIIQ24628207
Sequence and structural characteristics of the trypsin-resistant T6 surface protein of group A streptococciQ24672374
Phage_Finder: automated identification and classification of prophage regions in complete bacterial genome sequencesQ24674211
Identification of novel growth phase- and media-dependent small non-coding RNAs in Streptococcus pyogenes M49 using intergenic tiling arraysQ27496603
Bacterial small RNA regulators: versatile roles and rapidly evolving variationsQ27692531
Application of phylogenetic networks in evolutionary studiesQ28276801
Mugsy: fast multiple alignment of closely related whole genomesQ28300407
Detecting key structural features within highly recombined genesQ28469121
Population genetics of Streptococcus dysgalactiae subspecies equisimilis reveals widely dispersed clones and extensive recombinationQ28750227
Pathogenesis of group A streptococcal infectionsQ29615547
Intervening sequences of regularly spaced prokaryotic repeats derive from foreign genetic elementsQ29615788
Horizontal gene transfer in prokaryotes: quantification and classificationQ29616017
Clustered regularly interspaced short palindrome repeats (CRISPRs) have spacers of extrachromosomal originQ29617073
eBURST: inferring patterns of evolutionary descent among clusters of related bacterial genotypes from multilocus sequence typing dataQ29617369
Tracing the evolutionary history of the pandemic group A streptococcal M1T1 cloneQ30420207
Complete Genome Sequence of emm1 Streptococcus pyogenes A20, a Strain with an Intact Two-Component System, CovRS, Isolated from a Patient with Necrotizing Fasciitis.Q30427156
Updated model of group A Streptococcus M proteins based on a comprehensive worldwide studyQ30427910
Population genetics and linkage analysis of loci within the FCT region of Streptococcus pyogenesQ30478987
Relationships between emm and multilocus sequence types within a global collection of Streptococcus pyogenesQ30481807
Phylogenomic analysis of natural selection pressure in Streptococcus genomesQ30833778
Mosaic prophages with horizontally acquired genes account for the emergence and diversification of the globally disseminated M1T1 clone of Streptococcus pyogenes.Q33214624
Extreme sequence divergence but conserved ligand-binding specificity in Streptococcus pyogenes M proteinQ33245070
Differences between Belgian and Brazilian group A Streptococcus epidemiologic landscapeQ33267269
Assessing the reliability of eBURST using simulated populations with known ancestryQ33281959
Contribution of exogenous genetic elements to the group A Streptococcus metagenomeQ33295386
Genomic evidence for the evolution of Streptococcus equi: host restriction, increased virulence, and genetic exchange with human pathogensQ33422960
M-protein and other intrinsic virulence factors of Streptococcus pyogenes are encoded on an ancient pathogenicity islandQ33435697
Functional analysis of the quorum-sensing streptococcal invasion locus (sil)Q33515270
Highly frequent mutations in negative regulators of multiple virulence genes in group A streptococcal toxic shock syndrome isolatesQ33549662
Phylogenomics and the dynamic genome evolution of the genus Streptococcus.Q33556679
Phim46.1, the main Streptococcus pyogenes element carrying mef(A) and tet(O) genesQ33558887
Protein F, a fibronectin-binding protein, is an adhesin of the group A streptococcus Streptococcus pyogenesQ33613212
Evolutionary pathway to increased virulence and epidemic group A Streptococcus disease derived from 3,615 genome sequencesQ33674247
Molecular epidemiology of sil locus in clinical Streptococcus pyogenes strains.Q33703624
Complete genome sequencing and analysis of a Lancefield group G Streptococcus dysgalactiae subsp. equisimilis strain causing streptococcal toxic shock syndrome (STSS).Q33790403
Evolution of transcription regulatory genes is linked to niche specialization in the bacterial pathogen Streptococcus pyogenesQ33855515
Lateral gene transfer of streptococcal ICE element RD2 (region of difference 2) encoding secreted proteinsQ33860454
CRISPR inhibition of prophage acquisition in Streptococcus pyogenesQ33900548
Improving pan-genome annotation using whole genome multiple alignmentQ33947348
Variation in Streptococcus pyogenes NAD+ glycohydrolase is associated with tissue tropismQ33962937
In vivo lysogenic conversion of Tox(-) Streptococcus pyogenes to Tox(+) with Lysogenic Streptococci or free phageQ33966693
Group A streptococcal genotypes from pediatric throat isolates in Rome, Italy.Q33972143
Current knowledge of type-specific M antigens of group A streptococciQ33972503
Two group A streptococcal peptide pheromones act through opposing Rgg regulators to control biofilm developmentQ33987494
The global burden of group A streptococcal diseasesQ33991045
Molecular characterization of the 2011 Hong Kong scarlet fever outbreakQ34017580
The Structure and Function of Serum Opacity Factor: A Unique Streptococcal Virulence Determinant That Targets High-Density LipoproteinsQ34022219
M protein gene (emm type) analysis of group A beta-hemolytic streptococci from Ethiopia reveals unique patternsQ34042270
Sequencing emm-specific PCR products for routine and accurate typing of group A streptococciQ34063290
Evolution of diversity in epidemics revealed by analysis of the human bacterial pathogen group A StreptococcusQ34077165
Genomic localization of a T serotype locus to a recombinatorial zone encoding extracellular matrix-binding proteins in Streptococcus pyogenesQ34114942
Influence of recombination and niche separation on the population genetic structure of the pathogen Streptococcus pyogenesQ34120910
Detection of group A Streptococcus in tonsils from pediatric patients reveals high rate of asymptomatic streptococcal carriageQ34122041
The phage-related chromosomal islands of Gram-positive bacteria.Q34126277
Genome analysis of an inducible prophage and prophage remnants integrated in the Streptococcus pyogenes strain SF370.Q34159879
Streptococcus pyogenes biofilm growth in vitro and in vivo and its role in colonization, virulence, and genetic exchangeQ34169777
Association of the prtF1 gene (encoding fibronectin-binding protein F1) and the sic gene (encoding the streptococcal inhibitor of complement) with emm types of group A streptococci isolated from Japanese children with pharyngitis.Q34201644
Cysteine proteinase SpeB from Streptococcus pyogenes - a potent modifier of immunologically important host and bacterial proteinsQ34229809
Delineation of Streptococcus dysgalactiae, its subspecies, and its clinical and phylogenetic relationship to Streptococcus pyogenesQ34231692
PHYLOViZ: phylogenetic inference and data visualization for sequence based typing methods.Q34262338
Structure and distribution of an unusual chimeric genetic element encoding macrolide resistance in phylogenetically diverse clones of group A StreptococcusQ34283458
Differential recognition of surface proteins in Streptococcus pyogenes by two sortase gene homologsQ34309446
Novel regulatory small RNAs in Streptococcus pyogenesQ34350583
DNase expression allows the pathogen group A Streptococcus to escape killing in neutrophil extracellular trapsQ34495926
High frequency of hypermutable Pseudomonas aeruginosa in cystic fibrosis lung infection.Q34508854
Genetically diverse group A streptococci from children in far-western Nepal share high genetic relatedness with isolates from other countriesQ41483857
Tetracycline resistance in group a streptococci: emergence on a global scale and influence on multiple-drug resistance.Q41907784
Simultaneous isolation of emm89-type Streptococcus pyogenes strains with a wild-type or mutated covS gene from a single streptococcal toxic shock syndrome patientQ42231230
The cryptic competence pathway in Streptococcus pyogenes is controlled by a peptide pheromoneQ42268891
Scarlet fever outbreak, Hong Kong, 2011.Q42425694
Genomic analysis of emm59 group A Streptococcus invasive strains, United StatesQ42573946
Characterization of nra, a global negative regulator gene in group A streptococciQ42595830
M.SpyI, a DNA methyltransferase encoded on a mefA chimeric element, modifies the genome of Streptococcus pyogenesQ42602656
emm and sof gene sequence variation in relation to serological typing of opacity-factor-positive group A streptococciQ42627153
Comparative genomics reveals close genetic relationships between phages from dairy bacteria and pathogenic Streptococci: evolutionary implications for prophage-host interactionsQ42661459
A locus of group A Streptococcus involved in invasive disease and DNA transferQ42684978
Characterization and genome sequencing of a novel bacteriophage infecting Streptococcus agalactiae with high similarity to a phage from Streptococcus pyogenesQ42693078
Epidemic of group A Streptococcus M/emm59 causing invasive disease in CanadaQ42843125
Typing of the pilus-protein-encoding FCT region and biofilm formation as novel parameters in epidemiological investigations of Streptococcus pyogenes isolates from various infection sitesQ43223180
Typing of Streptococcus pyogenes strains isolated from throat infections in the region of Aachen, GermanyQ43539973
Horizontal gene transfer and host specificity of beta-haemolytic streptococci: the role of a putative composite transposon containing scpB and lmb.Q43796631
A theory of modular evolution for bacteriophagesQ43948704
Assessment of Streptococcus pyogenes microcolony formation in infected skin by confocal laser scanning microscopyQ44595006
Distribution of emm type and antibiotic susceptibility of group A streptococci causing invasive and noninvasive disease.Q46312482
Macrolide-resistant Streptococcus pyogenes in the United States, 2002-2003.Q46634338
Full-genome dissection of an epidemic of severe invasive disease caused by a hypervirulent, recently emerged clone of group A StreptococcusQ47226053
Characterisation of group A streptococcal (GAS) isolates from children with tic disordersQ47252576
Complete Genome Sequence of emm Type 14 Streptococcus pyogenes Strain HSC5.Q37097980
Population biology of the human restricted pathogen, Streptococcus pyogenesQ37201383
Genetic relationships deduced from emm and multilocus sequence typing of invasive Streptococcus dysgalactiae subsp. equisimilis and S. canis recovered from isolates collected in the United StatesQ37256307
Rise and persistence of global M1T1 clone of Streptococcus pyogenesQ37282916
emm and C-repeat region molecular typing of beta-hemolytic Streptococci in a tropical country: implications for vaccine developmentQ37302090
Genetic elements responsible for erythromycin resistance in streptococciQ37322929
Rheumatogenic streptococci and autoimmunityQ37367944
Genome-wide molecular dissection of serotype M3 group A Streptococcus strains causing two epidemics of invasive infectionsQ37416252
Streptococcal bacteriocins and the case for Streptococcus salivarius as model oral probioticsQ37590315
Fibronectin-binding protein gene recombination and horizontal transfer between group A and G streptococciQ37597519
Global emm type distribution of group A streptococci: systematic review and implications for vaccine developmentQ37602842
Molecular characterization of an invasive phenotype of group A Streptococcus arising during human infection using whole genome sequencing of multiple isolates from the same patientQ37719747
Tissue tropisms in group A streptococcal infectionsQ37721420
Molecular insight into invasive group A streptococcal diseaseQ37933057
Chromosomal islands of Streptococcus pyogenes and related streptococci: molecular switches for survival and virulenceQ38243813
Sigma X induces competence gene expression in Streptococcus pyogenesQ38309852
The dynamics of streptococcal infections in a defined population of children: serotypes associated with skin and respiratory infectionsQ38526176
Contrasting molecular epidemiology of group A streptococci causing tropical and nontropical infections of the skin and throatQ38906624
Natural selection and evolution of streptococcal virulence genes involved in tissue-specific adaptationsQ39116254
A systematic and functional classification of Streptococcus pyogenes that serves as a new tool for molecular typing and vaccine developmentQ39197885
Molecular typing of Streptococcus pyogenes from remote Aboriginal communities where rheumatic fever is common and pyoderma is the predominant streptococcal infectionQ39233037
Group A streptococci in children with acute pharyngitis in Sousse, Tunisia.Q39286644
Determining confidence intervals when measuring genetic diversity and the discriminatory abilities of typing methods for microorganismsQ39467107
Prospective surveillance of streptococcal sore throat in a tropical countryQ39488235
Induction of lysogenic bacteriophage and phage-associated toxin from group a streptococci during coculture with human pharyngeal cellsQ39518685
A globally disseminated M1 subclone of group A streptococci differs from other subclones by 70 kilobases of prophage DNA and capacity for high-frequency intracellular invasion.Q39573818
Draft Genome Sequences of Streptococcus pyogenes Strains Associated with Throat and Skin Infections in LebanonQ39660429
M protein gene type distribution among group A streptococcal clinical isolates recovered in Mexico City, Mexico, from 1991 to 2000, and Durango, Mexico, from 1998 to 1999: overlap with type distribution within the United StatesQ39732896
Characterization of group A Streptococcus strains recovered from Mexican children with pharyngitis by automated DNA sequencing of virulence-related genes: unexpectedly large variation in the gene (sic) encoding a complement-inhibiting proteinQ40015084
Inferring genomic flux in bacteriaQ40027121
ICESp2905, the erm(TR)-tet(O) element of Streptococcus pyogenes, is formed by two independent integrative and conjugative elementsQ40327655
Analysis of the growth phase-associated transcriptome of Streptococcus pyogenesQ40402451
Using Sybil for interactive comparative genomics of microbes on the web.Q40439676
Rheumatic heart disease in developing countriesQ40442932
Complete genome of acute rheumatic fever-associated serotype M5 Streptococcus pyogenes strain manfredo.Q40468602
High diversity of group A Streptococcal emm types in an Indian community: the need to tailor multivalent vaccinesQ40518530
Molecular heterogeneity among north Indian isolates of Group A StreptococcusQ40532244
High pharyngeal carriage rates of Streptococcus pyogenes in Dunedin school children with a low incidence of rheumatic fever.Q40607939
The R28 protein of Streptococcus pyogenes is related to several group B streptococcal surface proteins, confers protective immunity and promotes binding to human epithelial cellsQ40635973
Genetic correlates of throat and skin isolates of group A streptococciQ40670693
Epidemiologic analysis of group A streptococcal serotypes associated with severe systemic infections, rheumatic fever, or uncomplicated pharyngitisQ40730576
Group A streptococcal strains in Kuwait: a nine-year prospective study of prevalence and associationsQ40735311
ICESp1116, the genetic element responsible for erm(B)-mediated, inducible resistance to erythromycin in Streptococcus pyogenesQ41184259
P407language of work or nameEnglishQ1860
P921main subjectgenomicsQ222046
P304page(s)393-418
P577publication date2015-07-01
P1433published inInfection, Genetics and EvolutionQ4041378
P1476titleMolecular epidemiology and genomics of group A Streptococcus
P478volume33

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