| P50 | author | Gustavo Caetano-Anollés | Q5621363 |
| | Kyung Mo Kim | Q80076340 |
| | Derek Caetano-Anollés | Q28833572 |
| P2093 | author name string | Feng-Jie Sun | |
| | Arshan Nasir | |
| | Kaiyue Zhou | |
| | Jay E. Mittenthal | |
| P2860 | cites work | Rooting the tree of life by transition analyses | Q21030522 |
| | Nanoarchaea: representatives of a novel archaeal phylum or a fast-evolving euryarchaeal lineage related to Thermococcales? | Q21092876 |
| | Giant viruses coexisted with the cellular ancestors and represent a distinct supergroup along with superkingdoms Archaea, Bacteria and Eukarya | Q21093622 |
| | Are node-based and stem-based clades equivalent? Insights from graph theory | Q21128653 |
| | Ribosomal history reveals origins of modern protein synthesis | Q21134742 |
| | Genome sizes and the Benford distribution | Q21560991 |
| | Toward Automatic Reconstruction of a Highly Resolved Tree of Life | Q22065877 |
| | Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya | Q22066209 |
| | Pattern pluralism and the Tree of Life hypothesis | Q22066333 |
| | The ring of life provides evidence for a genome fusion origin of eukaryotes | Q22122495 |
| | Gene ontology: tool for the unification of biology | Q23781406 |
| | On the evolution of cells | Q24530769 |
| | An evolutionarily structured universe of protein architecture | Q24561613 |
| | A new biology for a new century | Q24561954 |
| | Nucleation, rapid folding, and globular intrachain regions in proteins | Q24564344 |
| | Phylogenetic structure of the prokaryotic domain: The primary kingdoms | Q24564821 |
| | The proteomic complexity and rise of the primordial ancestor of diversified life | Q24605181 |
| | The evolutionary history of protein fold families and proteomes confirms that the archaeal ancestor is more ancient than the ancestors of other superkingdoms | Q24615814 |
| | The ancient history of the structure of ribonuclease P and the early origins of Archaea | Q24633502 |
| | The archaebacterial origin of eukaryotes | Q24646611 |
| | Mapping the tree of life: progress and prospects | Q24647521 |
| | The universal ancestor | Q24655363 |
| | Reductive evolution of architectural repertoires in proteomes and the birth of the tripartite world | Q24672074 |
| | Evolution according to large ribosomal subunit RNA. | Q38575171 |
| | Tracing the evolution of RNA structure in ribosomes | Q39615537 |
| | Benefits of using molecular structure and abundance in phylogenomic analysis | Q42323229 |
| | Networks of gene sharing among 329 proteobacterial genomes reveal differences in lateral gene transfer frequency at different phylogenetic depths | Q42573241 |
| | Evolutionary relationships amongst archaebacteria. A comparative study of 23 S ribosomal RNAs of a sulphur-dependent extreme thermophile, an extreme halophile and a thermophilic methanogen | Q43018793 |
| | The conflict between horizontal gene transfer and the safeguard of identity: origin of meiotic sexuality | Q43270495 |
| | Topology links RNA secondary structure with global conformation, dynamics, and adaptation | Q45798130 |
| | A phase transition for a random cluster model on phylogenetic trees. | Q46076531 |
| | Nanoarchaeum equitans is a living fossil | Q47217693 |
| | The phylogenomic roots of modern biochemistry: origins of proteins, cofactors and protein biosynthesis | Q47236897 |
| | Proteome Evolution and the Metabolic Origins of Translation and Cellular Life | Q47343403 |
| | Widespread Recruitment of Ancient Domain Structures in Modern Enzymes during Metabolic Evolution | Q47672688 |
| | The genomics of LUCA. | Q47683382 |
| | The rooting of the universal tree of life is not reliable | Q47702896 |
| | 50 & 100 years ago | Q59036974 |
| | Testing Methods: The Evaluation of Discovery Operations in Evolutionary Biology | Q60327911 |
| | A six-parameter space to describe galaxy diversification | Q69027201 |
| | Cirripede phylogeny using a novel approach: molecular morphometrics | Q73038737 |
| | Use of RNA secondary structure for studying the evolution of RNase P and RNase MRP | Q73071124 |
| | Mg2+-dependent folding of a large ribozyme without kinetic traps | Q73227008 |
| | Evolved RNA secondary structure and the rooting of the universal tree of life | Q77644062 |
| | Testing the new animal phylogeny: first use of combined large-subunit and small-subunit rRNA gene sequences to classify the protostomes | Q77679876 |
| | The contest between parsimony and likelihood | Q80571313 |
| | Pervasive indels and their evolutionary dynamics after the fish-specific genome duplication | Q83850969 |
| | The coevolutionary roots of biochemistry and cellular organization challenge the RNA world paradigm | Q38101436 |
| | Phylogenomics supports a cellularly structured urancestor | Q38101437 |
| | The DNA Habitat and its RNA Inhabitants: At the Dawn of RNA Sociology | Q38555824 |
| | Polyphasic evidence delineating the root of life and roots of biological domains | Q47752376 |
| | The tree of life might be rooted in the branch leading to Nanoarchaeota | Q47763086 |
| | Convergent evolution of domain architectures (is rare). | Q50761844 |
| | Widespread recruitment of ancient domain structures in modern enzymes during metabolic evolution. | Q51258572 |
| | Species, clusters and the 'Tree of life': a graph-theoretic perspective. | Q51688133 |
| | Domain tree-based analysis of protein architecture evolution. | Q51900130 |
| | Protein evolution viewed through Escherichia coli protein sequences: introducing the notion of a structural segment of homology, the module. | Q54565622 |
| | A congruent phylogenomic signal places eukaryotes within the Archaea. | Q55129585 |
| | Phylogenetic Analysis Under Dollo's Law | Q55898771 |
| | The post-Darwinist rhizome of life | Q56580470 |
| | SHOT: a web server for the construction of genome phylogenies | Q56918354 |
| | Structure is three to ten times more conserved than sequence-A study of structural response in protein cores | Q57208986 |
| | Congruence of evidence for a Methanopyrus-proximal root of life based on transfer RNA and aminoacyl-tRNA synthetase genes | Q57258832 |
| | Transfer RNA paralogs: evidence for genetic code-amino acid biosynthesis coevolution and an archaeal root of life | Q57258889 |
| | The origin of eukaryotes and their relationship with the Archaea: are we at a phylogenomic impasse? | Q58835264 |
| | The origin of modern metabolic networks inferred from phylogenomic analysis of protein architecture | Q24675243 |
| | The common ancestor of archaea and eukarya was not an archaeon | Q27009594 |
| | SCOP: a structural classification of proteins database for the investigation of sequences and structures | Q27860689 |
| | CATH--a hierarchic classification of protein domain structures | Q27861100 |
| | The neomuran origin of archaebacteria, the negibacterial root of the universal tree and bacterial megaclassification | Q28218259 |
| | The evolutionary history of the structure of 5S ribosomal RNA | Q28253243 |
| | The origin and evolution of tRNA inferred from phylogenetic analysis of structure | Q28259907 |
| | Structural domains in proteins and their role in the dynamics of protein function | Q28266675 |
| | The anatomy and taxonomy of protein structure | Q28277011 |
| | The evolutionary mechanics of domain organization in proteomes and the rise of modularity in the protein world | Q28306679 |
| | Comparative analysis of RNA families reveals distinct repertoires for each domain of life | Q28484799 |
| | Structural phylogenomics retrodicts the origin of the genetic code and uncovers the evolutionary impact of protein flexibility | Q28681694 |
| | The human genome retains relics of its prokaryotic ancestry: human genes of archaebacterial and eubacterial origin exhibit remarkable differences | Q28740926 |
| | Genome networks root the tree of life between prokaryotic domains | Q28744447 |
| | The primary divisions of life: a phylogenomic approach employing composition-heterogeneous methods | Q28752077 |
| | tRNomics: analysis of tRNA genes from 50 genomes of Eukarya, Archaea, and Bacteria reveals anticodon-sparing strategies and domain-specific features | Q28768508 |
| | Phylogenetic classification and the universal tree | Q29547749 |
| | The energetics of genome complexity | Q29615412 |
| | A kingdom-level phylogeny of eukaryotes based on combined protein data | Q29616067 |
| | Genome phylogeny based on gene content | Q29617415 |
| | The hydrogen hypothesis for the first eukaryote | Q29618266 |
| | Data growth and its impact on the SCOP database: new developments | Q29619285 |
| | Evolutionary relationship of archaebacteria, eubacteria, and eukaryotes inferred from phylogenetic trees of duplicated genes | Q30004701 |
| | Comparing genomes in terms of protein structure: surveys of a finite parts list. | Q30322094 |
| | The origin, evolution and structure of the protein world. | Q30374287 |
| | Patterns of protein-fold usage in eight microbial genomes: a comprehensive structural census | Q30432219 |
| | The tree of one percent. | Q30478962 |
| | Universal trees based on large combined protein sequence data sets. | Q30655328 |
| | Defining an essence of structure determining residue contacts in proteins | Q30972736 |
| | Global patterns of protein domain gain and loss in superkingdoms | Q31151064 |
| | Distribution of protein folds in the three superkingdoms of life. | Q31917687 |
| | Evolutionary dynamics of introns in plastid-derived genes in plants: saturation nearly reached but slow intron gain continues | Q33304606 |
| | Evolutionary patterns in the sequence and structure of transfer RNA: early origins of archaea and viruses | Q33325883 |
| | Lateral gene transfer as a support for the tree of life | Q33353196 |
| | From archaeon to eukaryote: the evolutionary dark ages of the eukaryotic cell | Q33355183 |
| | Towards a postmodern synthesis of evolutionary biology | Q33412313 |
| | Genome beginnings: rooting the tree of life | Q33477246 |
| | Search for a 'Tree of Life' in the thicket of the phylogenetic forest | Q33481340 |
| | The fundamental units, processes and patterns of evolution, and the tree of life conundrum | Q33507444 |
| | The evolutionary history of protein domains viewed by species phylogeny | Q33521193 |
| | Whole-proteome phylogeny of prokaryotes by feature frequency profiles: An alignment-free method with optimal feature resolution | Q33591645 |
| | Network analyses structure genetic diversity in independent genetic worlds | Q33591742 |
| | Where is the root of the universal tree of life? | Q33738556 |
| | Orthologs, paralogs and genome comparisons | Q33801581 |
| | Structure of bacterial tubulin BtubA/B: evidence for horizontal gene transfer | Q33879004 |
| | Physics and evolution of thermophilic adaptation | Q33923949 |
| | Eukaryote evolution: engulfed by speculation | Q34004778 |
| | The archaeal 'TACK' superphylum and the origin of eukaryotes | Q34029119 |
| | A universal molecular clock of protein folds and its power in tracing the early history of aerobic metabolism and planet oxygenation | Q34134946 |
| | Evolution of the vacuolar H+-ATPase: implications for the origin of eukaryotes | Q34161454 |
| | The genetic core of the universal ancestor | Q34181411 |
| | A daily-updated tree of (sequenced) life as a reference for genome research. | Q34351790 |
| | Common evolutionary trends for SINE RNA structures | Q34584604 |
| | Origin and evolution of protein fold designs inferred from phylogenomic analysis of CATH domain structures in proteomes | Q34649562 |
| | Seeing the Tree of Life behind the phylogenetic forest | Q34669548 |
| | Ancient phylogenetic relationships | Q34776712 |
| | Testing the hypothesis of common ancestry. | Q34971118 |
| | Modelling 'evo-devo' with RNA. | Q35007355 |
| | The genomic tree as revealed from whole proteome comparisons | Q35023050 |
| | Current approaches to whole genome phylogenetic analysis | Q35115189 |
| | On the conceptual difficulties in rooting the tree of life | Q35618729 |
| | Biphasic patterns of diversification and the emergence of modules | Q36144688 |
| | A general framework of persistence strategies for biological systems helps explain domains of life | Q36632710 |
| | The root of the universal tree and the origin of eukaryotes based on elongation factor phylogeny. | Q37437877 |
| | Comparative analysis of proteomes and functionomes provides insights into origins of cellular diversification | Q37481755 |
| | Phylogeny of prokaryotes: does it exist and why should we care? | Q37561956 |
| | Horizontal gene transfer and the earliest stages of the evolution of life | Q37568557 |
| | The falsifiability of the models for the origin of eukaryotes. | Q37947071 |
| P275 | copyright license | Creative Commons Attribution 3.0 Unported | Q14947546 |
| P6216 | copyright status | copyrighted | Q50423863 |
| P407 | language of work or name | English | Q1860 |
| P921 | main subject | Archaea | Q10872 |
| P304 | page(s) | 590214 | |
| P577 | publication date | 2014-01-01 | |
| | 2014-06-02 | |
| P1433 | published in | Archaea | Q15749211 |
| P1476 | title | Archaea: the first domain of diversified life | |
| P478 | volume | 2014 | |