Characterizing the dynamics of proteasome complexes by proteomics approaches

scientific article

Characterizing the dynamics of proteasome complexes by proteomics approaches is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1089/ARS.2013.5815
P932PMC publication ID4241863
P698PubMed publication ID24423446
P5875ResearchGate publication ID259723710

P2093author name stringLan Huang
Athit Kao
Clinton Yu
Robyn M. Kaake
P2860cites workMass spectrometric characterization of the affinity-purified human 26S proteasome complexQ24298353
The SRC-3/AIB1 coactivator is degraded in a ubiquitin- and ATP-independent manner by the REGgamma proteasomeQ24302180
Proteasome function is regulated by cyclic AMP-dependent protein kinase through phosphorylation of Rpt6Q24310109
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Regulation of cardiac proteasomes by ubiquitination, SUMOylation, and beyondQ26859368
Crystal structure of the 20S proteasome from the archaeon T. acidophilum at 3.4 A resolutionQ27730197
Structure of 20S proteasome from yeast at 2.4 A resolutionQ27735081
The ubiquitin systemQ27860803
Multiple associated proteins regulate proteasome structure and functionQ27931244
Proteasomal proteomics: identification of nucleotide-sensitive proteasome-interacting proteins by mass spectrometric analysis of affinity-purified proteasomesQ27931576
An integrated mass spectrometry-based proteomic approach: quantitative analysis of tandem affinity-purified in vivo cross-linked protein complexes (QTAX) to decipher the 26 S proteasome-interacting network.Q27933467
Regulation of CD8+ T cell development by thymus-specific proteasomesQ28116400
Regulation of murine cardiac 20S proteasomes: role of associating partnersQ28253191
Localization of the proteasomal ubiquitin receptors Rpn10 and Rpn13 by electron cryomicroscopyQ28256624
Complete subunit architecture of the proteasome regulatory particleQ28257212
Molecular architecture of the 26S proteasome holocomplex determined by an integrative approachQ28259014
Conformational switching of the 26S proteasome enables substrate degradationQ28292908
Chronic ethanol feeding affects proteasome-interacting proteinsQ28582843
Mapping the murine cardiac 26S proteasome complexesQ28592761
Reaching for high-hanging fruit in drug discovery at protein-protein interfacesQ29547258
Recognition and processing of ubiquitin-protein conjugates by the proteasomeQ29547616
Proteasomes and their kin: proteases in the machine ageQ29614359
Protein degradation and protection against misfolded or damaged proteinsQ29618400
Probing native protein structures by chemical cross-linking, mass spectrometry, and bioinformaticsQ30387550
Identification of cross-linked peptides from complex samples.Q30418939
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Near-atomic resolution structural model of the yeast 26S proteasome.Q30524942
Scaled-down purification protocol to access proteomic analysis of 20S proteasome from human tissue samples: comparison of normal and tumor colorectal cells.Q33338579
Characterization of the Brain 26S Proteasome and its Interacting ProteinsQ33980033
Toward an integrated structural model of the 26S proteasomeQ34121912
Profiling of protein interaction networks of protein complexes using affinity purification and quantitative mass spectrometryQ34121939
Dynamics of cullin-RING ubiquitin ligase network revealed by systematic quantitative proteomicsQ34433677
Development of a Novel Cross-linking Strategy for Fast and Accurate Identification of Cross-linked Peptides of Protein ComplexesQ34454898
Enhancement of proteasome function by PA28α overexpression protects against oxidative stress.Q34592321
Proteome dynamics and proteome function of cardiac 19S proteasomesQ34994354
Oxidative stress-mediated regulation of proteasome complexesQ34994401
Selective enrichment and identification of azide-tagged cross-linked peptides using chemical ligation and mass spectrometryQ35057799
Regulation of the 26S proteasome complex during oxidative stressQ35120069
Characterization of cell cycle specific protein interaction networks of the yeast 26S proteasome complex by the QTAX strategyQ35120072
Subunit order of eukaryotic TRiC/CCT chaperonin by cross-linking, mass spectrometry, and combinatorial homology modelingQ35779424
SCF-mediated protein degradation and cell cycle controlQ36101758
Post-translational modification of cardiac proteasomes: functional delineation enabled by proteomicsQ36115334
Mapping the protein interaction network of the human COP9 signalosome complex using a label-free QTAX strategyQ36163496
Proteasome-associated proteins: regulation of a proteolytic machineQ36275413
Development of proteasome inhibitors as research tools and cancer drugsQ36389262
Mapping the structural topology of the yeast 19S proteasomal regulatory particle using chemical cross-linking and probabilistic modelingQ36455723
Subcellular distribution and dynamics of active proteasome complexes unraveled by a workflow combining in vivo complex cross-linking and quantitative proteomics.Q36666357
Functions of the proteasome: from protein degradation and immune surveillance to cancer therapyQ36703005
Exploring proteasome complexes by proteomic approachesQ36772538
Characterization of the proteasome interaction network using a QTAX-based tag-team strategy and protein interaction network analysisQ36869843
Revealing the dynamics of the 20 S proteasome phosphoproteome: a combined CID and electron transfer dissociation approachQ36959245
Proteomics of proteasome complexes and ubiquitinated proteinsQ36973779
Regulation of proteasome-mediated protein degradation during oxidative stress and agingQ37061426
Contrasting proteome biology and functional heterogeneity of the 20 S proteasome complexes in mammalian tissuesQ37080673
Affinity purification strategy to capture human endogenous proteasome complexes diversity and to identify proteasome-interacting proteins.Q37210700
Insights into the molecular architecture of the 26S proteasomeQ37274386
An atomic model AAA-ATPase/20S core particle sub-complex of the 26S proteasomeQ37407311
Effects of ethanol on the proteasome interacting proteinsQ37711312
The role of the proteasome in the generation of MHC class I ligands and immune responsesQ37851052
Proteasome activator 200: the heat is on...Q37851267
Proteomics to study the diversity and dynamics of proteasome complexes: from fundamentals to the clinic.Q37912201
Mass spectrometry-based proteomics and network biologyQ37996108
Coordination of cell growth and division by the ubiquitin-proteasome system.Q38006275
Atypical ubiquitylation - the unexplored world of polyubiquitin beyond Lys48 and Lys63 linkages.Q38028343
Protein damage, repair and proteolysis.Q38056303
The lysine48-based polyubiquitin chain proteasomal signal: not a single child anymoreQ38057666
Therapeutic targeting of cancer cell cycle using proteasome inhibitorsQ38069898
Toward understanding induction of oxidative stress and apoptosis by proteasome inhibitorsQ38179455
Differential roles of proteasome and immunoproteasome regulators Pa28αβ, Pa28γ and Pa200 in the degradation of oxidized proteins.Q39352530
Identifying dynamic interactors of protein complexes by quantitative mass spectrometryQ40068442
Ubiquitin- and ATP-independent proteolytic turnover of p21 by the REGgamma-proteasome pathwayQ40115992
Heterohexameric ring arrangement of the eukaryotic proteasomal ATPases: implications for proteasome structure and assembly.Q40836221
Localization of the regulatory particle subunit Sem1 in the 26S proteasomeQ41611000
Molecular model of the human 26S proteasomeQ41613713
A tandem affinity tag for two-step purification under fully denaturing conditions: application in ubiquitin profiling and protein complex identification combined with in vivocross-linkingQ46181926
False discovery rate estimation for cross-linked peptides identified by mass spectrometryQ47408453
The left and right ventricle in the grip of protein degradation: similarities and unique patterns in regulation.Q53062729
Mammalian proteasome subpopulations with distinct molecular compositions and proteolytic activities.Q53537600
Quantifying cross-tissue diversity in proteasome complexes by mass spectrometryQ57666145
Structural Probing of a Protein Phosphatase 2A Network by Chemical Cross-Linking and Mass SpectrometryQ63953718
Intracellular protein degradation: from a vague idea thru the lysosome and the ubiquitin-proteasome system and onto human diseases and drug targetingQ83704514
P433issue17
P407language of work or nameEnglishQ1860
P304page(s)2444-56
P577publication date2014-12-10
P1433published inAntioxidants & Redox SignalingQ4775078
P1476titleCharacterizing the dynamics of proteasome complexes by proteomics approaches
P478volume21

Reverse relations

cites work (P2860)
Q35093980Deciphering preferential interactions within supramolecular protein complexes: the proteasome case
Q51243625Extracellular Proteasomes Are Deficient in 19S Subunits as Revealed by iTRAQ Quantitative Proteomics.
Q36010708Proteasome Dysfunction Associated to Oxidative Stress and Proteotoxicity in Adipocytes Compromises Insulin Sensitivity in Human Obesity
Q47280042Proteomic analysis of affinity-purified extracellular proteasomes reveals exclusively 20S complexes.
Q27026951Targeting the ubiquitin-proteasome system in heart disease: the basis for new therapeutic strategies

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