YbiB from Escherichia coli, the Defining Member of the Novel TrpD2 Family of Prokaryotic DNA-binding Proteins

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YbiB from Escherichia coli, the Defining Member of the Novel TrpD2 Family of Prokaryotic DNA-binding Proteins is …
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scholarly articleQ13442814

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P356DOI10.1074/JBC.M114.620575
P932PMC publication ID4528117
P698PubMed publication ID26063803

P50authorOlga MayansQ30158947
Alexandra HolinskiQ64700427
Patrick BabingerQ64700467
P2093author name stringCian Stutz
Daniel Schneider
Wolfgang Kaiser
P2860cites workStructural analysis of two enzymes catalysing reverse metabolic reactions implies common ancestryQ24536893
PHENIX: a comprehensive Python-based system for macromolecular structure solutionQ24654617
A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye bindingQ25938984
The crystal structure of anthranilate phosphoribosyltransferase from the enterobacterium Pectobacterium carotovorumQ27639379
Structural conservation of RecF and Rad50: implications for DNA recognition and RecF functionQ27643663
Activation of anthranilate phosphoribosyltransferase from Sulfolobus solfataricus by removal of magnesium inhibition and acceleration of product releaseQ27655077
The substrate capture mechanism of Mycobacterium tuberculosis anthranilate phosphoribosyltransferase provides a mode for inhibitionQ27683860
Structural and theoretical studies suggest domain movement produces an active conformation of thymidine phosphorylaseQ27765011
The crystal structure of pyrimidine nucleoside phosphorylase in a closed conformationQ27766042
SOLVE and RESOLVE: automated structure solution and density modificationQ27860481
WebLogo: A Sequence Logo GeneratorQ27860646
Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal OmegaQ27860809
One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR productsQ27860842
Automated macromolecular model building for X-ray crystallography using ARP/wARP version 7Q27860936
T-Coffee: A novel method for fast and accurate multiple sequence alignmentQ27860999
Features and development of CootQ27861079
Structural analyses reveal two distinct families of nucleoside phosphorylasesQ28366428
The crystal structure of TrpD, a metabolic enzyme essential for lung colonization by Mycobacterium tuberculosis, in complex with its substrate phosphoribosylpyrophosphateQ28486620
Automatic processing of rotation diffraction data from crystals of initially unknown symmetry and cell constantsQ29546524
An efficient recombination system for chromosome engineering in Escherichia coliQ29615038
MEGA: a biologist-centric software for evolutionary analysis of DNA and protein sequencesQ29617490
The evolution of gene duplications: classifying and distinguishing between modelsQ29619358
Stabilization of a metabolic enzyme by library selection in Thermus thermophilusQ30401353
Connected gene neighborhoods in prokaryotic genomesQ31051729
Glyceraldehyde-3-phosphate dehydrogenase: a universal internal control for Western blots in prokaryotic and eukaryotic cellsQ34156708
Identification of two DNA helicases UvrD and DinG as suppressors for lethality caused by mutant cspA mRNAsQ34351824
Stoichiometry and affinity for thymine DNA glycosylase binding to specific and nonspecific DNAQ34723697
Stimulation of Escherichia coli DNA damage inducible DNA helicase DinG by the single-stranded DNA binding protein SSB.Q36354576
LuxArray, a high-density, genomewide transcription analysis of Escherichia coli using bioluminescent reporter strainsQ39504901
Two WXXF-based motifs in NECAPs define the specificity of accessory protein binding to AP-1 and AP-2.Q40197173
Staphylococcus aureus DinG, a helicase that has evolved into a nucleaseQ40794077
Characterization of the DNA damage-inducible helicase DinG from Escherichia coli.Q42441246
The helicases DinG, Rep and UvrD cooperate to promote replication across transcription units in vivoQ42600355
Differential modes of DNA binding by mismatch uracil DNA glycosylase from Escherichia coli: implications for abasic lesion processing and enzyme communication in the base excision repair pathwayQ42714261
E. coli genome manipulation by P1 transductionQ46760894
Role of each residue in catalysis in the active site of pyrimidine nucleoside phosphorylase from Bacillus subtilis: a hybrid QM/MM studyQ46937162
A rationally designed monomeric variant of anthranilate phosphoribosyltransferase from Sulfolobus solfataricus is as active as the dimeric wild-type enzyme but less thermostable.Q54428578
The DinG protein from Escherichia coli is a structure-specific helicase.Q54443591
Fluorescence and NMR investigations on the ligand binding properties of adenylate kinases.Q54710050
Structural and Mutational Analysis of Substrate Complexation by Anthranilate Phosphoribosyltransferase fromSulfolobus solfataricusQ57091000
Analysis of RNA hydrolyzates by liquid chromatography-mass spectrometryQ67684207
Two-stage polymerase chain reaction protocol allowing introduction of multiple mutations, deletions, and insertions, using QuikChange site-directed mutagenesisQ77426888
P433issue32
P407language of work or nameEnglishQ1860
P921main subjectEscherichia coliQ25419
cell biologyQ7141
P304page(s)19527-19539
P577publication date2015-06-10
P1433published inJournal of Biological ChemistryQ867727
P1476titleYbiB from Escherichia coli, the Defining Member of the Novel TrpD2 Family of Prokaryotic DNA-binding Proteins
P478volume290