Solution structure and ligand recognition of the WW domain pair of the yeast splicing factor Prp40

scientific article

Solution structure and ligand recognition of the WW domain pair of the yeast splicing factor Prp40 is …
instance of (P31):
scholarly articleQ13442814

External links are
P356DOI10.1016/S0022-2836(02)01145-2
P3181OpenCitations bibliographic resource ID4405500
P698PubMed publication ID12460579

P50authorSilke WiesnerQ58091806
Michael SattlerQ28037132
Maria J MaciasQ37643992
P2093author name stringGunter Stier
P2860cites workFunction of WW domains as phosphoserine- or phosphothreonine-binding modulesQ22008803
The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis toolsQ24248165
Interaction of WW domains with hematopoietic transcription factor p45/NF-E2 and RNA polymerase IIQ24313410
FBP WW domains and the Abl SH3 domain bind to a specific class of proline-rich ligandsQ24532189
Formin binding proteins bear WWP/WW domains that bind proline-rich peptides and functionally resemble SH3 domainsQ24563234
Crystallography & NMR System: A New Software Suite for Macromolecular Structure DeterminationQ26778405
Structural analysis of WW domains and design of a WW prototypeQ27622470
Structure of a WW domain containing fragment of dystrophin in complex with beta-dystroglycanQ27626122
Structural basis for phosphoserine-proline recognition by group IV WW domainsQ27626138
Solution structure of a Nedd4 WW domain-ENaC peptide complexQ27631393
Solution structures of the YAP65 WW domain and the variant L30 K in complex with the peptides GTPPPPYTVG, N-(n-octyl)-GPPPY and PLPPY and the application of peptide libraries reveal a minimal binding epitopeQ27636855
The splicing factor, Prp40, binds the phosphorylated carboxyl-terminal domain of RNA polymerase II.Q51075771
A novel interactive tool for rigid-body modeling of multi-domain macromolecules using residual dipolar couplings.Q52056461
Order matrix analysis of residual dipolar couplings using singular value decomposition.Q52214028
Ambiguous NOEs and automated NOE assignmentQ57077648
Heteronuclear multidimensional NMR experiments for the structure determination of proteins in solution employing pulsed field gradientsQ57912400
Direct Determination of Changes of Interdomain Orientation on Ligation: Use of the Orientational Dependence of15N NMR Relaxation in Abl SH(32)†Q58175506
Chi 1 angle information from a simple two-dimensional NMR experiment that identifies trans 3JNC gamma couplings in isotopically enriched proteinsQ73469469
Functional recognition of 5' splice site by U4/U6.U5 tri-snRNP defines a novel ATP-dependent step in early spliceosome assemblyQ74307271
Genetic interactions between the ESS1 prolyl-isomerase and the RSP5 ubiquitin ligase reveal opposing effects on RNA polymerase II functionQ77502665
The FF domain: a novel motif that often accompanies WW domainsQ77950810
Pulse sequences for measurement of one-bond (15)N-(1)H coupling constants in the protein backboneQ78233519
Defining long range order in NMR structure determination from the dependence of heteronuclear relaxation times on rotational diffusion anisotropyQ27739077
Use of dipolar 1H-15N and 1H-13C couplings in the structure determination of magnetically oriented macromolecules in solutionQ27743970
Backbone dynamics of a free and phosphopeptide-complexed Src homology 2 domain studied by 15N NMR relaxationQ27860508
Protein modules and signalling networksQ27860694
AQUA and PROCHECK-NMR: programs for checking the quality of protein structures solved by NMRQ27860778
NMRPipe: a multidimensional spectral processing system based on UNIX pipesQ27860859
MOLMOL: a program for display and analysis of macromolecular structuresQ27860873
NMR View: A computer program for the visualization and analysis of NMR dataQ27860951
The program XEASY for computer-supported NMR spectral analysis of biological macromoleculesQ27860993
Protein backbone angle restraints from searching a database for chemical shift and sequence homologyQ27861108
LIGPLOT: a program to generate schematic diagrams of protein-ligand interactionsQ27861128
Cross-intron bridging interactions in the yeast commitment complex are conserved in mammalsQ27936705
Phospho-carboxyl-terminal domain binding and the role of a prolyl isomerase in pre-mRNA 3'-End formationQ27938452
WW and SH3 domains, two different scaffolds to recognize proline-rich ligandsQ28209648
Direct measurement of distances and angles in biomolecules by NMR in a dilute liquid crystalline mediumQ28253146
The WW domain: a signalling site in dystrophin?Q28306741
Integrating mRNA processing with transcriptionQ28610124
Nuclear magnetic dipole interactions in field-oriented proteins: information for structure determination in solutionQ29041975
An extensive network of coupling among gene expression machinesQ29547273
Efficient analysis of macromolecular rotational diffusion from heteronuclear relaxation dataQ29617922
The importance of being proline: the interaction of proline-rich motifs in signaling proteins with their cognate domainsQ29618469
An improved method for distinguishing between anisotropic tumbling and chemical exchange in analysis of 15N relaxation parametersQ30168012
Structure of the WW domain of a kinase-associated protein complexed with a proline-rich peptide.Q30176860
Floating stereospecific assignment revisited: application to an 18 kDa protein and comparison with J-coupling dataQ30427834
Rsp5 WW domains interact directly with the carboxyl-terminal domain of RNA polymerase II.Q30862970
Protein repeats: structures, functions, and evolutionQ33954617
EVH1 domains: structure, function and interactionsQ34120295
Normalization of nomenclature for peptide motifs as ligands of modular protein domainsQ34120337
Measurement of HN-H alpha J couplings in calcium-free calmodulin using new 2D and 3D water-flip-back methodsQ36711324
Tails of RNA polymerase II.Q38003896
A robust method for determining the magnitude of the fully asymmetric alignment tensor of oriented macromolecules in the absence of structural informationQ47879770
P433issue4
P407language of work or nameEnglishQ1860
P921main subjectsolution structureQ99235426
P304page(s)807-22
P577publication date2002-12-06
P1433published inJournal of Molecular BiologyQ925779
P1476titleSolution structure and ligand recognition of the WW domain pair of the yeast splicing factor Prp40
P478volume324

Reverse relations

cites work (P2860)
Q472242991H, 13C and 15N assignments of the tandem WW domains of human MAGI-1/BAP-1.
Q38180972A day in the life of the spliceosome
Q35688363A genome-wide analysis indicates that yeast pre-mRNA splicing is predominantly posttranscriptional
Q67226068A unified mechanism for intron and exon definition and back-splicing
Q35224419Allostery mediates ligand binding to WWOX tumor suppressor via a conformational switch
Q37125539Changes in the folding landscape of the WW domain provide a molecular mechanism for an inherited genetic syndrome
Q40913415Characterization of substrate binding of the WW domains in human WWP2 protein
Q27931057Comparative analysis of Saccharomyces cerevisiae WW domains and their interacting proteins.
Q35567467Cotranscriptional spliceosome assembly and splicing are independent of the Prp40p WW domain
Q27664978Coupling of tandem Smad ubiquitination regulatory factor (Smurf) WW domains modulates target specificity
Q35062802Dynamics of an ultrafast folding subdomain in the context of a larger protein fold
Q47070628FRA16D common chromosomal fragile site oxido-reductase (FOR/WWOX) protects against the effects of ionizing radiation in Drosophila
Q36342236Genetic interactions of hypomorphic mutations in the m7G cap-binding pocket of yeast nuclear cap binding complex: an essential role for Cbc2 in meiosis via splicing of MER3 pre-mRNA
Q33288606Influence of hPin1 WW N-terminal domain boundaries on function, protein stability, and folding
Q35107554Interaction with polyglutamine-expanded huntingtin alters cellular distribution and RNA processing of huntingtin yeast two-hybrid protein A (HYPA).
Q24305170Ligand binding to WW tandem domains of YAP2 transcriptional regulator is under negative cooperativity
Q37529620Molecular origin of the binding of WWOX tumor suppressor to ErbB4 receptor tyrosine kinase
Q42662994Multiple WW domains of Nedd4-1 undergo conformational exchange that is quenched upon peptide binding.
Q38928277Multivalent binding of formin-binding protein 21 (FBP21)-tandem-WW domains fosters protein recognition in the pre-spliceosome
Q24297967NMR solution structure of the tandem Src homology 3 domains of p47phox complexed with a p22phox-derived proline-rich peptide
Q41619446Novel mechanism of regulation of tomato bushy stunt virus replication by cellular WW-domain proteins
Q37851243Nuclear magnetic resonance analysis of protein-DNA interactions
Q33383950Probing WW Domains to Uncover and Refine Determinants of Specificity in Ligand Recognition
Q24537373Prp8 protein: at the heart of the spliceosome
Q35813622Rapid amyloid fiber formation from the fast-folding WW domain FBP28.
Q30164100Solution structure of the tandem Src homology 3 domains of p47phox in an autoinhibited form
Q27646888Specificity and Autoregulation of Notch Binding by Tandem WW Domains in Suppressor of Deltex
Q91753027Spt5 modulates cotranscriptional spliceosome assembly in Saccharomyces cerevisiae
Q36851688Structural basis for controlling the dimerization and stability of the WW domains of an atypical subfamily
Q35217707Structural insights into the functional versatility of WW domain-containing oxidoreductase tumor suppressor
Q24336008Structural insights into the specific binding of huntingtin proline-rich region with the SH3 and WW domains
Q24313388Structure and function of the two tandem WW domains of the pre-mRNA splicing factor FBP21 (formin-binding protein 21)
Q30159593Structure of FBP11 WW1-PL ligand complex reveals the mechanism of proline-rich ligand recognition by group II/III WW domains
Q36044842Structure-function analysis and genetic interactions of the yeast branchpoint binding protein Msl5.
Q37122051Structure-function analysis of the 5' end of yeast U1 snRNA highlights genetic interactions with the Msl5*Mud2 branchpoint-binding complex and other spliceosome assembly factors
Q24550922Structure-function-folding relationship in a WW domain
Q35889802The Role of Electrostatic Interactions in Folding of β-Proteins
Q58194414The Structure of Prp40 FF1 Domain and Its Interaction with the crn-TPR1 Motif of Clf1 Gives a New Insight into the Binding Mode of FF Domains
Q24561427The WW domain-containing proteins interact with the early spliceosome and participate in pre-mRNA splicing in vivo
Q44918062The structure and dynamics of tandem WW domains in a negative regulator of notch signaling, Suppressor of deltex
Q34486872Ubiquitin binding by a variant Jab1/MPN domain in the essential pre-mRNA splicing factor Prp8p
Q28087599Versatile communication strategies among tandem WW domain repeats
Q34119805WW domain folding complexity revealed by infrared spectroscopy