Crystal Structure of a Replicative DNA Polymerase Bound to the Oxidized Guanine Lesion Guanidinohydantoin ,

scientific article

Crystal Structure of a Replicative DNA Polymerase Bound to the Oxidized Guanine Lesion Guanidinohydantoin , is …
instance of (P31):
scholarly articleQ13442814

External links are
P356DOI10.1021/BI902195P
P3181OpenCitations bibliographic resource ID4761129
P932PMC publication ID2840191
P698PubMed publication ID20166752
P5875ResearchGate publication ID41485407

P50authorSylvie DoubliéQ28323959
Cynthia J. BurrowsQ28823528
Susan S WallaceQ41886664
Pierre AllerQ57308049
P2093author name stringYu Ye
P2860cites workLesion (in)tolerance reveals insights into DNA replication fidelityQ22121984
Involvement of phi29 DNA polymerase thumb subdomain in the proper coordination of synthesis and degradation during DNA replicationQ24547997
Structure and potential mutagenicity of new hydantoin products from guanosine and 8-oxo-7,8-dihydroguanine oxidation by transition metals.Q24812378
Crystallography & NMR System: A New Software Suite for Macromolecular Structure DeterminationQ26778405
Processing of X-ray diffraction data collected in oscillation modeQ26778468
Structure of the replicating complex of a pol alpha family DNA polymeraseQ27632340
A structural rationale for stalling of a replicative DNA polymerase at the most common oxidative thymine lesion, thymine glycolQ27641081
Caught bending the A-rule: crystal structures of translesion DNA synthesis with a non-natural nucleotideQ27647517
Secondary-structure matching (SSM), a new tool for fast protein structure alignment in three dimensionsQ27860532
3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structuresQ27860547
Version 1.2 of the Crystallography and NMR systemQ27860583
PRODRG: a tool for high-throughput crystallography of protein-ligand complexesQ27860633
Phasercrystallographic softwareQ27860930
Features and development of CootQ27861079
Structural and biochemical investigation of the role in proofreading of a beta hairpin loop found in the exonuclease domain of a replicative DNA polymerase of the B familyQ28273546
Insertion of dGMP and dAMP during in vitro DNA synthesis opposite an oxidized form of 7,8-dihydro-8-oxoguanineQ28369419
Formation of 13C-, 15N-, and 18O-Labeled Guanidinohydantoin from Guanosine Oxidation with Singlet Oxygen. Implications for Structure and MechanismQ30883974
Nei deficient Escherichia coli are sensitive to chromate and accumulate the oxidized guanine lesion spiroiminodihydantoinQ34231955
Error-prone replication of oxidatively damaged DNA by a high-fidelity DNA polymeraseQ34342518
Translesion synthesis by human DNA polymerase eta across oxidative products of guanineQ34588282
Accuracy, lesion bypass, strand displacement and translocation by DNA polymerasesQ35738766
Superior removal of hydantoin lesions relative to other oxidized bases by the human DNA glycosylase hNEIL1Q36952958
Structural basis for the dual coding potential of 8-oxoguanosine by a high-fidelity DNA polymerase.Q37513745
Crystallographic snapshots of a replicative DNA polymerase encountering an abasic siteQ37543875
Synthesis and characterization of the oxidized dGTP lesions spiroiminodihydantoin-2'-deoxynucleoside-5'- triphosphate and guanidinohydantoin-2'-deoxynucleoside-5'- triphosphateQ39660158
Characterization of hydantoin products from one-electron oxidation of 8-oxo-7,8-dihydroguanosine in a nucleoside modelQ43674222
In vitro nucleotide misinsertion opposite the oxidized guanosine lesions spiroiminodihydantoin and guanidinohydantoin and DNA synthesis past the lesions using Escherichia coli DNA polymerase I (Klenow fragment).Q44251057
The hydantoin lesions formed from oxidation of 7,8-dihydro-8-oxoguanine are potent sources of replication errors in vivoQ44537507
Effect of the Oxidized Guanosine Lesions Spiroiminodihydantoin and Guanidinohydantoin on Proofreading by Escherichia coli DNA Polymerase I (Klenow Fragment) in Different Sequence ContextsQ44641231
Different behaviors in vivo of mutations in the beta hairpin loop of the DNA polymerases of the closely related phages T4 and RB69.Q45968224
Structural and thermodynamic features of spiroiminodihydantoin damaged DNA duplexesQ46733154
The substrate specificity of MutY for hyperoxidized guanine lesions in vivo.Q51079402
Characterization of spiroiminodihydantoin as a product of one-electron oxidation of 8-Oxo-7,8-dihydroguanosineQ73799886
The pH-dependent role of superoxide in riboflavin-catalyzed photooxidation of 8-oxo-7,8-dihydroguanosineQ74445535
P433issue11
P407language of work or nameEnglishQ1860
P921main subjectcrystal structureQ895901
P304page(s)2502-9
P577publication date2010-03-23
P1433published inBiochemistryQ764876
P1476titleCrystal Structure of a Replicative DNA Polymerase Bound to the Oxidized Guanine Lesion Guanidinohydantoin ,
P478volume49

Reverse relations

cites work (P2860)
Q27670953A Crystallographic Study of the Role of Sequence Context in Thymine Glycol Bypass by a Replicative DNA Polymerase Serendipitously Sheds Light on the Exonuclease Complex
Q35886189Base and Nucleotide Excision Repair of Oxidatively Generated Guanine Lesions in DNA.
Q40994808Biologically relevant oxidants cause bound proteins to readily oxidatively cross-link at Guanine
Q84445963Calculation of the stabilization energies of oxidatively damaged guanine base pairs with guanine
Q37975286Chemical and biological consequences of oxidatively damaged guanine in DNA.
Q37933191Chemistry and structural biology of DNA damage and biological consequences
Q54163647Conformational stabilities of iminoallantoin and its base pairs in DNA: implications for mutagenicity.
Q27682343Crystal Structure of DNA Polymerase β with DNA Containing the Base Lesion Spiroiminodihydantoin in a Templating Position
Q38943129Excessive Reactive Oxygen Species and Exotic DNA Lesions as an Exploitable Liability
Q27681153Genome and cancer single nucleotide polymorphisms of the human NEIL1 DNA glycosylase: Activity, structure, and the effect of editing
Q37689834Mechanisms of base substitution mutagenesis in cancer genomes
Q27323040Molecular events during translocation and proofreading extracted from 200 static structures of DNA polymerase.
Q87909908Nanopore Analysis of the 5-Guanidinohydantoin to Iminoallantoin Isomerization in Duplex DNA
Q39000410Removal of oxidatively generated DNA damage by overlapping repair pathways
Q37532110Repair of hydantoin lesions and their amine adducts in DNA by base and nucleotide excision repair
Q27675877Structural Characterization of a Mouse Ortholog of Human NEIL3 with a Marked Preference for Single-Stranded DNA
Q37401669Structural destabilization of DNA duplexes containing single-base lesions investigated by nanopore measurements
Q27664187Substitution of Ala for Tyr567 in RB69 DNA Polymerase Allows dAMP and dGMP To Be Inserted opposite Guanidinohydantoin,
Q27675214The Miscoding Potential of 5-Hydroxycytosine Arises Due to Template Instability in the Replicative Polymerase Active Site
Q35562087The NEIL glycosylases remove oxidized guanine lesions from telomeric and promoter quadruplex DNA structures
Q40811126The R- and S-diastereoisomeric effects on the guanidinohydantoin-induced mutations in DNA.
Q36189537Thermodynamic consequences of the hyperoxidized guanine lesion guanidinohydantoin in duplex DNA
Q36714153pH-Dependent Equilibrium between 5-Guanidinohydantoin and Iminoallantoin Affects Nucleotide Insertion Opposite the DNA Lesion

Search more.