Solution Structure of the Ubiquitin-associated (UBA) Domain of Human Autophagy Receptor NBR1 and Its Interaction with Ubiquitin and Polyubiquitin

scientific article

Solution Structure of the Ubiquitin-associated (UBA) Domain of Human Autophagy Receptor NBR1 and Its Interaction with Ubiquitin and Polyubiquitin is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1074/JBC.M114.555441
P932PMC publication ID4022861
P698PubMed publication ID24692539

P50authorHidehito TochioQ46468868
Erik WalindaQ47126362
Kenji SugaseQ47126377
Daichi MorimotoQ47126385
Tsuyoshi KonumaQ56152900
Masahiro ShirakawaQ115325074
P2860cites workp62/SQSTM1 and ALFY interact to facilitate the formation of p62 bodies/ALIS and their degradation by autophagyQ24300134
A role for NBR1 in autophagosomal degradation of ubiquitinated substratesQ24316135
Molecular discrimination of structurally equivalent Lys 63-linked and linear polyubiquitin chainsQ24316967
TALOS+: a hybrid method for predicting protein backbone torsion angles from NMR chemical shiftsQ24651272
Structural basis for ubiquitin-mediated dimerization and activation of the ubiquitin protein ligase Cbl-bQ27646953
Conformational instability of the MARK3 UBA domain compromises ubiquitin recognition and promotes interaction with the adjacent kinase domainQ27647604
Ubiquitin recognition by the ubiquitin-associated domain of p62 involves a novel conformational switchQ27649332
Affinity Makes the Difference: Nonselective Interaction of the UBA Domain of Ubiquilin-1 with Monomeric Ubiquitin and Polyubiquitin ChainsQ27649753
Dimerisation of the UBA domain of p62 inhibits ubiquitin binding and regulates NF-kappaB signallingQ27658291
Unique Structural, Dynamical, and Functional Properties of K11-Linked Polyubiquitin ChainsQ27678904
The CCPN data model for NMR spectroscopy: development of a software pipelineQ27860601
Automated NMR structure calculation with CYANAQ27860754
NMRPipe: a multidimensional spectral processing system based on UNIX pipesQ27860859
Protein misfolding, functional amyloid, and human diseaseQ28131732
Suppression of basal autophagy in neural cells causes neurodegenerative disease in miceQ28131756
Loss of autophagy in the central nervous system causes neurodegeneration in miceQ28131804
The ubiquitin codeQ28265104
Selective autophagy mediated by autophagic adapter proteinsQ28301940
p62 Targeting to the autophagosome formation site requires self-oligomerization but not LC3 bindingQ28508630
Recognition and processing of ubiquitin-protein conjugates by the proteasomeQ29547616
A role for ubiquitin in selective autophagyQ29614499
Ubiquitin-binding domains - from structures to functionsQ29614829
The HADDOCK web server for data-driven biomolecular dockingQ29617755
KUJIRA, a package of integrated modules for systematic and interactive analysis of NMR data directed to high-throughput NMR structure studies.Q30362931
Fast and accurate fitting of relaxation dispersion data using the flexible software package GLOVEQ30645001
An automated system designed for large scale NMR data deposition and annotation: application to over 600 assigned chemical shift data entries to the BioMagResBank from the Riken Structural Genomics/Proteomics Initiative internal databaseQ34300555
Structure of the UBA domain of Dsk2p in complex with ubiquitin molecular determinants for ubiquitin recognition.Q34412166
Ubiquitin accumulation in autophagy-deficient mice is dependent on the Nrf2-mediated stress response pathway: a potential role for protein aggregation in autophagic substrate selectionQ34412364
Crystal structure of the ubiquitin-associated (UBA) domain of p62 and its interaction with ubiquitin.Q35213068
Protein standard absolute quantification (PSAQ) method for the measurement of cellular ubiquitin poolsQ35381570
Mars -- robust automatic backbone assignment of proteinsQ38336011
Avid interactions underlie the Lys63-linked polyubiquitin binding specificities observed for UBA domainsQ41869345
The proteasome antechamber maintains substrates in an unfolded stateQ44216424
Structural basis for distinct roles of Lys63- and Lys48-linked polyubiquitin chains.Q45088254
Diverse polyubiquitin interaction properties of ubiquitin-associated domainsQ46592679
REDCAT: a residual dipolar coupling analysis toolQ47892565
NMR: prediction of molecular alignment from structure using the PALES softwareQ48590571
Serine 403 Phosphorylation of p62/SQSTM1 Regulates Selective Autophagic Clearance of Ubiquitinated ProteinsQ48826829
Selective autophagy: ubiquitin-mediated recognition and beyondQ84974064
P433issue20
P407language of work or nameEnglishQ1860
P921main subjectcell biologyQ7141
autophagyQ288322
solution structureQ99235426
P304page(s)13890-13902
P577publication date2014-04-01
P1433published inJournal of Biological ChemistryQ867727
P1476titleSolution structure of the ubiquitin-associated (UBA) domain of human autophagy receptor NBR1 and its interaction with ubiquitin and polyubiquitin
P478volume289

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