An automated system designed for large scale NMR data deposition and annotation: application to over 600 assigned chemical shift data entries to the BioMagResBank from the Riken Structural Genomics/Proteomics Initiative internal database

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An automated system designed for large scale NMR data deposition and annotation: application to over 600 assigned chemical shift data entries to the BioMagResBank from the Riken Structural Genomics/Proteomics Initiative internal database is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1007/S10858-012-9641-6
P932PMC publication ID4308039
P698PubMed publication ID22689068

P50authorJohn MarkleyQ29946263
Shigeyuki YokoyamaQ37376039
Takanori KigawaQ48035017
Hideo AkutsuQ55382964
Naohiro KobayashiQ64865830
Eldon L UlrichQ87030063
Naoya TochioQ114320797
Yoko HaranoQ114444601
Eiichi NakataniQ114444602
P2093author name stringToshimichi Fujiwara
Steve Mading
P2860cites workSPARTA+: a modest improvement in empirical NMR chemical shift prediction by means of an artificial neural networkQ24615699
CS23D: a web server for rapid protein structure generation using NMR chemical shifts and sequence dataQ24646326
Empirical correlation between protein backbone 15N and 13C secondary chemical shifts and its application to nitrogen chemical shift re-referencingQ24650998
TALOS+: a hybrid method for predicting protein backbone torsion angles from NMR chemical shiftsQ24651272
Consistent blind protein structure generation from NMR chemical shift dataQ24657929
The CCPN data model for NMR spectroscopy: development of a software pipelineQ27860601
NMRPipe: a multidimensional spectral processing system based on UNIX pipesQ27860859
NMR View: A computer program for the visualization and analysis of NMR dataQ27860951
Protein backbone angle restraints from searching a database for chemical shift and sequence homologyQ27861108
Evaluating protein structures determined by structural genomics consortiaQ29547577
BioMagResBankQ29614807
???Q57663110
SPINS: a laboratory information management system for organizing and archiving intermediate and final results from NMR protein structure determinations.Q30352414
Protein structure determination from NMR chemical shiftsQ30362013
KUJIRA, a package of integrated modules for systematic and interactive analysis of NMR data directed to high-throughput NMR structure studies.Q30362931
A framework for scientific data modeling and automated software developmentQ30843904
Assignment validation software suite for the evaluation and presentation of protein resonance assignment dataQ30899668
A nomenclature and data model to describe NMR experimentsQ31065583
A relational database for sequence-specific protein NMR dataQ31152811
Straightforward and complete deposition of NMR data to the PDBeQ33647896
A probabilistic approach for validating protein NMR chemical shift assignmentsQ34113870
Rapid and accurate calculation of protein 1H, 13C and 15N chemical shiftsQ34199813
Protein NMR recall, precision, and F-measure scores (RPF scores): structure quality assessment measures based on information retrieval statisticsQ34392409
Linear analysis of carbon-13 chemical shift differences and its application to the detection and correction of errors in referencing and spin system identificationsQ34436608
Protein backbone chemical shifts predicted from searching a database for torsion angle and sequence homologyQ34645831
Creation of a nuclear magnetic resonance data repository and literature databaseQ36416876
The CCPN project: an interim report on a data model for the NMR communityQ47616220
P433issue4
P921main subjectdatabaseQ8513
automationQ184199
chemical shiftQ899127
P304page(s)311-320
P577publication date2012-06-13
P1433published inJournal of Biomolecular NMRQ3186900
P1476titleAn automated system designed for large scale NMR data deposition and annotation: application to over 600 assigned chemical shift data entries to the BioMagResBank from the Riken Structural Genomics/Proteomics Initiative internal database
P478volume53

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Q47951711Backbone and side chain assignments of the second RNA-binding domain of Musashi-1 in its free form and in complex with 5-mer RNA.
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Q61796406NMR Analysis on Molecular Interaction of Lignin with Amino Acid Residues of Carbohydrate-Binding Module from Trichoderma reesei Cel7A
Q47626684NMR Detection of Semi-Specific Antibody Interactions in Serum Environments.
Q50055231Plastic roles of phenylalanine and tyrosine residues of TLS/FUS in complex formation with the G-quadruplexes of telomeric DNA and TERRA.
Q27682743Solution Structure of the Ubiquitin-associated (UBA) Domain of Human Autophagy Receptor NBR1 and Its Interaction with Ubiquitin and Polyubiquitin
Q48016360Structural Insight into the Recognition of r(UAG) by Musashi-1 RBD2, and Construction of a Model of Musashi-1 RBD1-2 Bound to the Minimum Target RNA.
Q42333552The helical propensity of the extracellular loop is responsible for the substrate specificity of Fe(III)-phytosiderophore transporters.
Q30277230The impact of structural genomics: the first quindecennial
Q38770050The role of metabolomics in determination of new dietary biomarkers

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