| scholarly article | Q13442814 |
| P2093 | author name string | D Shore | |
| P Moretti | |||
| P2860 | cites work | A system of shuttle vectors and yeast host strains designed for efficient manipulation of DNA in Saccharomyces cerevisiae | Q27860636 |
| Distortion of the DNA double helix by RAP1 at silencers and multiple telomeric binding sites. | Q27931439 | ||
| A novel Rap1p-interacting factor, Rif2p, cooperates with Rif1p to regulate telomere length in Saccharomyces cerevisiae. | Q27932204 | ||
| A protein-counting mechanism for telomere length regulation in yeast. | Q27932745 | ||
| Evidence that a complex of SIR proteins interacts with the silencer and telomere-binding protein RAP1. | Q27933472 | ||
| Silent information regulator protein complexes in Saccharomyces cerevisiae: a SIR2/SIR4 complex and evidence for a regulatory domain in SIR4 that inhibits its interaction with SIR3. | Q27933756 | ||
| Promoter-specific binding of Rap1 revealed by genome-wide maps of protein-DNA association | Q27933908 | ||
| Two DNA-binding factors recognize specific sequences at silencers, upstream activating sequences, autonomously replicating sequences, and telomeres in Saccharomyces cerevisiae | Q27934117 | ||
| Sif2p interacts with Sir4p amino-terminal domain and antagonizes telomeric silencing in yeast. | Q27934734 | ||
| Yeast heterochromatin: regulation of its assembly and inheritance by histones | Q46673607 | ||
| Origin recognition complex (ORC) in transcriptional silencing and DNA replication in S. cerevisiae | Q46889661 | ||
| Mechanisms of silencing in Saccharomyces cerevisiae | Q48018575 | ||
| Yeast origin recognition complex is involved in DNA replication and transcriptional silencing | Q48093039 | ||
| A yeast silencer contains sequences that can promote autonomous plasmid replication and transcriptional activation | Q48333642 | ||
| Yeast Ku protein plays a direct role in telomeric silencing and counteracts inhibition by rif proteins. | Q50142372 | ||
| RAP1 and telomere structure regulate telomere position effects in Saccharomyces cerevisiae. | Q54655346 | ||
| A yeast telomere binding activity binds to two related telomere sequence motifs and is indistinguishable from RAP1. | Q54724101 | ||
| Evidence for silencing compartments within the yeast nucleus: a role for telomere proximity and Sir protein concentration in silencer-mediated repression | Q61783589 | ||
| Yeast origin recognition complex functions in transcription silencing and DNA replication | Q61942289 | ||
| Active genes in budding yeast display enhanced in vivo accessibility to foreign DNA methylases: a novel in vivo probe for chromatin structure of yeast | Q67749363 | ||
| Silencing of genes at nontelomeric sites in yeast is controlled by sequestration of silencing factors at telomeres by Rap 1 protein | Q71118877 | ||
| Targeting of SIR1 protein establishes transcriptional silencing at HM loci and telomeres in yeast | Q72560058 | ||
| Action of a RAP1 carboxy-terminal silencing domain reveals an underlying competition between HMR and telomeres in yeast | Q72572914 | ||
| Silent domains are assembled continuously from the telomere and are defined by promoter distance and strength, and by SIR3 dosage | Q72802227 | ||
| Silenced chromatin is permissive to activator binding and PIC recruitment | Q73870520 | ||
| Relocalization of telomeric Ku and SIR proteins in response to DNA strand breaks in yeast | Q27936427 | ||
| SIR2 and SIR4 interactions differ in core and extended telomeric heterochromatin in yeast | Q27936734 | ||
| Role of interactions between the origin recognition complex and SIR1 in transcriptional silencing | Q27937028 | ||
| A RAP1-interacting protein involved in transcriptional silencing and telomere length regulation | Q27937220 | ||
| Elevated recombination rates in transcriptionally active DNA | Q28131616 | ||
| Position effect at S. cerevisiae telomeres: reversible repression of Pol II transcription | Q28131683 | ||
| The two-hybrid system: a method to identify and clone genes for proteins that interact with a protein of interest | Q28131694 | ||
| The multidomain structure of Orc1p reveals similarity to regulators of DNA replication and transcriptional silencing | Q28291160 | ||
| Mutation in the silencing gene S/R4 can delay aging in S. cerevisiae | Q29397443 | ||
| Modifiers of position effect are shared between telomeric and silent mating-type loci in S. cerevisiae. | Q29465402 | ||
| Histone H3 and H4 N-termini interact with SIR3 and SIR4 proteins: a molecular model for the formation of heterochromatin in yeast | Q29614857 | ||
| Spreading of transcriptional repressor SIR3 from telomeric heterochromatin | Q29618931 | ||
| A new class of yeast transcriptional activators | Q29620215 | ||
| The Sir proteins of Saccharomyces cerevisiae: mediators of transcriptional silencing and much more. | Q33879831 | ||
| Mutational analysis defines a C-terminal tail domain of RAP1 essential for Telomeric silencing in Saccharomyces cerevisiae. | Q33963968 | ||
| Telomere folding is required for the stable maintenance of telomere position effects in yeast | Q33966202 | ||
| Genetic analysis of Rap1p/Sir3p interactions in telomeric and HML silencing in Saccharomyces cerevisiae | Q33967521 | ||
| SIR3 and SIR4 proteins are required for the positioning and integrity of yeast telomeres | Q34343500 | ||
| Sir3p domains involved in the initiation of telomeric silencing in Saccharomyces cerevisiae | Q34605761 | ||
| Roles of two DNA-binding factors in replication, segregation and transcriptional repression mediated by a yeast silencer. | Q35985716 | ||
| The carboxy termini of Sir4 and Rap1 affect Sir3 localization: evidence for a multicomponent complex required for yeast telomeric silencing | Q36235711 | ||
| The clustering of telomeres and colocalization with Rap1, Sir3, and Sir4 proteins in wild-type Saccharomyces cerevisiae | Q36237437 | ||
| Purification and cloning of a DNA binding protein from yeast that binds to both silencer and activator elements | Q36447444 | ||
| Disturbance of normal cell cycle progression enhances the establishment of transcriptional silencing in Saccharomyces cerevisiae | Q36552456 | ||
| Tethered Sir3p nucleates silencing at telomeres and internal loci in Saccharomyces cerevisiae | Q36559692 | ||
| The SIR1 gene of Saccharomyces cerevisiae and its role as an extragenic suppressor of several mating-defective mutants | Q36689350 | ||
| C-terminal truncation of RAP1 results in the deregulation of telomere size, stability, and function in Saccharomyces cerevisiae | Q36705317 | ||
| Analyzing protein-protein interactions using two-hybrid system | Q36787579 | ||
| Connections between transcriptional activators, silencers, and telomeres as revealed by functional analysis of a yeast DNA-binding protein | Q36849855 | ||
| Functional domains of SIR4, a gene required for position effect regulation in Saccharomyces cerevisiae | Q36925530 | ||
| Separation of transcriptional activation and silencing functions of the RAP1-encoded repressor/activator protein 1: isolation of viable mutants affecting both silencing and telomere length | Q37587529 | ||
| Telomere-proximal DNA in Saccharomyces cerevisiae is refractory to methyltransferase activity in vivo | Q37599902 | ||
| Chromosomal landscape of nucleosome-dependent gene expression and silencing in yeast. | Q38317749 | ||
| Telomeres, not the end of the story | Q41489646 | ||
| Telomere tales: chromatin, telomerase and telomere function in Saccharomyces cerevisiae | Q41714809 | ||
| Epigenetic switching of transcriptional states: cis- and trans-acting factors affecting establishment of silencing at the HMR locus in Saccharomyces cerevisiae | Q42109592 | ||
| Silencers and domains of generalized repression | Q46090173 | ||
| P433 | issue | 23 | |
| P407 | language of work or name | English | Q1860 |
| P921 | main subject | cell biology | Q7141 |
| Chromatin-silencing protein SIR3 YLR442C | Q27551620 | ||
| Chromatin-silencing protein SIR4 YDR227W | Q27552982 | ||
| DNA-binding transcription factor RAP1 YNL216W | Q27553039 | ||
| P304 | page(s) | 8082-94 | |
| P577 | publication date | 2001-12-01 | |
| P1433 | published in | Molecular and Cellular Biology | Q3319478 |
| P1476 | title | Multiple interactions in Sir protein recruitment by Rap1p at silencers and telomeres in yeast. | |
| P478 | volume | 21 |
| Q27666528 | A conserved motif within RAP1 has diversified roles in telomere protection and regulation in different organisms |
| Q42105834 | A nonhistone protein-protein interaction required for assembly of the SIR complex and silent chromatin |
| Q77840676 | Bibliography. Current awareness on yeast |
| Q41487746 | Bypassing Sir2 and O-acetyl-ADP-ribose in transcriptional silencing |
| Q37520495 | Calculating the statistical significance of physical clusters of co-regulated genes in the genome: the role of chromatin in domain-wide gene regulation. |
| Q90006367 | Chromatin Loop Formation Induced by a Subtelomeric Protosilencer Represses EPA Genes in Candida glabrata |
| Q36408592 | Chromatin architectural proteins |
| Q34365634 | Co-evolution of transcriptional silencing proteins and the DNA elements specifying their assembly |
| Q29465401 | Competition between Heterochromatic Loci Allows the Abundance of the Silencing Protein, Sir4, to Regulate de novo Assembly of Heterochromatin |
| Q27937313 | Conversion of a replication origin to a silencer through a pathway shared by a Forkhead transcription factor and an S phase cyclin |
| Q92268657 | DNA binding modes influence Rap1 activity in the regulation of telomere length and MRX functions at DNA ends |
| Q36416213 | Differential nuclear localization does not determine the silencing status of Saccharomyces cerevisiae telomeres |
| Q27935281 | Domain structure and protein interactions of the silent information regulator Sir3 revealed by screening a nested deletion library of protein fragments |
| Q27937349 | Esc1, a nuclear periphery protein required for Sir4-based plasmid anchoring and partitioning |
| Q36154367 | Everything you ever wanted to know about Saccharomyces cerevisiae telomeres: beginning to end. |
| Q42369727 | Heterochromatin assembly by interrupted Sir3 bridges across neighboring nucleosomes. |
| Q35920385 | High Throughput Analyses of Budding Yeast ARSs Reveal New DNA Elements Capable of Conferring Centromere-Independent Plasmid Propagation |
| Q42934893 | Inactivation of the Sas2 histone acetyltransferase delays senescence driven by telomere dysfunction. |
| Q33521810 | Many sequence-specific chromatin modifying protein-binding motifs show strong positional preferences for potential regulatory regions in the Saccharomyces cerevisiae genome |
| Q28504964 | Mus musculus and Mus spretus homologues of the human telomere-associated protein TIN2 |
| Q33199507 | One-hybrid screens at the Saccharomyces cerevisiae HMR locus identify novel transcriptional silencing factors |
| Q33893339 | Ordered nucleation and spreading of silenced chromatin in Saccharomyces cerevisiae. |
| Q35198141 | Palmitoylation controls the dynamics of budding-yeast heterochromatin via the telomere-binding protein Rif1. |
| Q37619098 | Plasticity of telomere maintenance mechanisms in yeast |
| Q27936253 | Rap1 prevents telomere fusions by nonhomologous end joining |
| Q36981779 | Rap1 relocalization contributes to the chromatin-mediated gene expression profile and pace of cell senescence |
| Q27936518 | Rap1-Sir4 binding independent of other Sir, yKu, or histone interactions initiates the assembly of telomeric heterochromatin in yeast |
| Q27930606 | Regulating repression: roles for the sir4 N-terminus in linker DNA protection and stabilization of epigenetic states |
| Q45005910 | Regulation of Swi6/HP1-dependent heterochromatin assembly by cooperation of components of the mitogen-activated protein kinase pathway and a histone deacetylase Clr6. |
| Q27932665 | Restoration of silencing in Saccharomyces cerevisiae by tethering of a novel Sir2-interacting protein, Esc8. |
| Q27940369 | Sir3 C-terminal domain involvement in the initiation and spreading of heterochromatin. |
| Q27650773 | Structural and Functional Studies of the Rap1 C-Terminus Reveal Novel Separation-of-Function Mutants |
| Q27639534 | Structure and function of the BAH-containing domain of Orc1p in epigenetic silencing |
| Q27641394 | Structure of the coiled-coil dimerization motif of Sir4 and its interaction with Sir3 |
| Q36670262 | TRF2-RAP1 is required to protect telomeres from engaging in homologous recombination-mediated deletions and fusions |
| Q49552073 | TelAP1 links telomere complexes with developmental expression site silencing in African trypanosomes. |
| Q37975743 | Telomerase and telomere-associated proteins: structural insights into mechanism and evolution |
| Q41596462 | Telomere components as potential therapeutic targets for treating microbial pathogen infections |
| Q91846962 | Telomere-dependent and telomere-independent roles of RAP1 in regulating human stem cell homeostasis |
| Q34764300 | Telomeric protein distributions and remodeling through the cell cycle in Saccharomyces cerevisiae |
| Q34680189 | The DNA-binding domain of yeast Rap1 interacts with double-stranded DNA in multiple binding modes |
| Q27931016 | The Ku complex in silencing the cryptic mating-type loci of Saccharomyces cerevisiae |
| Q27939471 | The NAD(+)-dependent Sir2p histone deacetylase is a negative regulator of chromosomal DNA replication |
| Q30276142 | The Nuts and Bolts of Transcriptionally Silent Chromatin in Saccharomyces cerevisiae |
| Q27939937 | The SUMO E3 ligase Siz2 exerts a locus-dependent effect on gene silencing in Saccharomyces cerevisiae |
| Q38615510 | The Yeast Heterochromatin Protein Sir3 Experienced Functional Changes in the AAA+ Domain After Gene Duplication and Subfunctionalization |
| Q42590642 | The association of yKu with subtelomeric core X sequences prevents recombination involving telomeric sequences |
| Q35091508 | The different (sur)faces of Rap1p. |
| Q36761196 | The epigenetic regulation of mammalian telomeres |
| Q27675973 | The orientation of the C-terminal domain of the Saccharomyces cerevisiae Rap1 protein is determined by its binding to DNA |
| Q40395489 | The tail-module of yeast Mediator complex is required for telomere heterochromatin maintenance |
| Q27939855 | The transcriptional repressor activator protein Rap1p is a direct regulator of TATA-binding protein |
| Q35561025 | The wrapping loop and Rap1 C-terminal (RCT) domain of yeast Rap1 modulate access to different DNA binding modes |
| Q37337000 | Transcription factor substitution during the evolution of fungal ribosome regulation |
| Q39756036 | Transcriptional repression by the Pho4 transcription factor controls the timing of SNZ1 expression |
| Q89899802 | Trypanosoma brucei RAP1 Has Essential Functional Domains That Are Required for Different Protein Interactions |
| Q36498028 | Yeast Est2p affects telomere length by influencing association of Rap1p with telomeric chromatin |
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