RPAP1, a novel human RNA polymerase II-associated protein affinity purified with recombinant wild-type and mutated polymerase subunits

scientific article

RPAP1, a novel human RNA polymerase II-associated protein affinity purified with recombinant wild-type and mutated polymerase subunits is …
instance of (P31):
scholarly articleQ13442814

External links are
P356DOI10.1128/MCB.24.16.7043-7058.2004
P932PMC publication ID479746
P698PubMed publication ID15282305
P5875ResearchGate publication ID8428283

P50authorMarilena CojocaruQ125269494
Benoit CoulombeQ4890098
Jack GreenblattQ6112804
Jerry L WorkmanQ89229681
Diane ForgetQ120357689
Dania BaaliQ125269460
Mark ChandyQ38591221
Célia JeronimoQ64039212
Marie-France LangelierQ64039213
P2093author name stringTimothy R Hughes
Armaity P Davierwala
Bryan K Beattie
Dawn P Richards
Dominique Bergeron
Jeff Pootoolal
Mahel Zeghouf
Sanie Mnaimneh
Veronica Canadien
P2860cites workCdk-activating kinase complex is a component of human transcription factor TFIIHQ24306759
Three transitions in the RNA polymerase II transcription complex during initiationQ24532893
The glucocorticoid receptor inhibits NFkappaB by interfering with serine-2 phosphorylation of the RNA polymerase II carboxy-terminal domainQ24600925
Analysis of promoter binding by the E2F and pRB families in vivo: distinct E2F proteins mediate activation and repressionQ24607675
New core promoter element in RNA polymerase II-dependent transcription: sequence-specific DNA binding by transcription factor IIBQ24609068
Structural basis of transcription: RNA polymerase II at 2.8 angstrom resolutionQ27631276
Structural basis of transcription: an RNA polymerase II elongation complex at 3.3 A resolutionQ27631280
Structure of the bacterial RNA polymerase promoter specificity sigma subunitQ27638714
Crystal structure of a bacterial RNA polymerase holoenzyme at 2.6 A resolutionQ27638951
Structural basis of transcription initiation: RNA polymerase holoenzyme at 4 A resolutionQ27639011
Structural basis of transcription initiation: an RNA polymerase holoenzyme-DNA complexQ27639013
Architecture of initiation-competent 12-subunit RNA polymerase IIQ27641248
Complete, 12-subunit RNA polymerase II at 4.1-Å resolution: Implications for the initiation of transcriptionQ27641250
Structural basis of transcription: separation of RNA from DNA by RNA polymerase IIQ27643139
Global analysis of protein localization in budding yeastQ27653962
Crystal structure of a TFIIB-TBP-TATA-element ternary complexQ27729899
Crystal structure of a yeast TBP/TATA-box complexQ27732067
Co-crystal structure of TBP recognizing the minor groove of a TATA elementQ27732068
Three-dimensional structure of the armadillo repeat region of beta-cateninQ27743283
Functional profiling of the Saccharomyces cerevisiae genomeQ27860544
A generic protein purification method for protein complex characterization and proteome explorationQ27861087
A comprehensive two-hybrid analysis to explore the yeast protein interactomeQ27861093
The RNA polymerase II CTD kinase CTDK-I affects pre-mRNA 3' cleavage/polyadenylation through the processing component Pti1pQ27929922
Transcription elongation through DNA arrest sites. A multistep process involving both RNA polymerase II subunit RPB9 and TFIIS.Q27930400
Assigning function to yeast proteins by integration of technologies.Q27930471
RNA polymerase II elongation factors of Saccharomyces cerevisiae: a targeted proteomics approachQ27931237
Exchange of RNA polymerase II initiation and elongation factors during gene expression in vivoQ27934996
A motif shared by TFIIF and TFIIB mediates their interaction with the RNA polymerase II carboxy-terminal domain phosphatase Fcp1p in Saccharomyces cerevisiaeQ27936438
Large-scale prediction of Saccharomyces cerevisiae gene function using overlapping transcriptional clustersQ27936646
An unusual eukaryotic protein phosphatase required for transcription by RNA polymerase II and CTD dephosphorylation in S. cerevisiae.Q27939835
Kin28, the TFIIH-associated carboxy-terminal domain kinase, facilitates the recruitment of mRNA processing machinery to RNA polymerase II.Q27940303
Primary structure of the second largest subunit of human RNA polymerase II (or B)Q28114868
Structure and functional properties of human general transcription factor IIEQ28115411
Solution structure of the C-terminal core domain of human TFIIB: similarity to cyclin A and interaction with TATA-binding proteinQ28118266
A cDNA encoding RAP74, a general initiation factor for transcription by RNA polymerase IIQ28119106
The tandem affinity purification (TAP) method: a general procedure of protein complex purificationQ28131621
Independent recruitment in vivo by Gal4 of two complexes required for transcriptionQ28207045
Association of Cdk-activating kinase subunits with transcription factor TFIIHQ28236002
HOMSTRAD: a database of protein structure alignments for homologous familiesQ28289717
Cloning of a human gene encoding the general transcription initiation factor IIBQ28292676
The general transcription factors of RNA polymerase IIQ28298663
Opposing effects of Ctk1 kinase and Fcp1 phosphatase at Ser 2 of the RNA polymerase II C-terminal domainQ28343959
Reconstitution of the transcription factor TFIIH: assignment of functions for the three enzymatic subunits, XPB, XPD, and cdk7Q28646653
Control of elongation by RNA polymerase IIQ28646668
The double bromodomain protein Brd4 binds to acetylated chromatin during interphase and mitosisQ29618035
Molecular genetics of the RNA polymerase II general transcriptional machineryQ29620260
IMPALA: matching a protein sequence against a collection of PSI-BLAST-constructed position-specific score matricesQ30648351
DNA bending and wrapping around RNA polymerase: a "revolutionary" model describing transcriptional mechanisms.Q33652156
Distinct roles for CTD Ser-2 and Ser-5 phosphorylation in the recruitment and allosteric activation of mammalian mRNA capping enzymeQ33858428
Crystal structure of Thermus aquaticus core RNA polymerase at 3.3 A resolution.Q33875224
Proteins that bind to RNA polymerase II are required for accurate initiation of transcription at the adenovirus 2 major late promoterQ33880732
Architecture of RNA polymerase II and implications for the transcription mechanismQ33899775
A concise guide to cDNA microarray analysisQ34039239
Structural and functional interactions of transcription factor (TF) IIA with TFIIE and TFIIF in transcription initiation by RNA polymerase II.Q34087181
Isolation of three proteins that bind to mammalian RNA polymerase II.Q34192680
Mediator complexes and transcription.Q34245346
Formation of a carboxy-terminal domain phosphatase (Fcp1)/TFIIF/RNA polymerase II (pol II) complex in Schizosaccharomyces pombe involves direct interaction between Fcp1 and the Rpb4 subunit of pol IIQ34302645
Design issues for cDNA microarray experimentsQ34770425
Structural motifs and potential sigma homologies in the large subunit of human general transcription factor TFIIE.Q34989722
Conserved sequence motifs in the small subunit of human general transcription factor TFIIE.Q34989727
Armadillo repeat proteins: beyond the animal kingdomQ35208572
Analysis of the Role of TFIIE in Basal Transcription and TFIIH-Mediated Carboxy-Terminal Domain Phosphorylation through Structure-Function Studies of TFIIE-αQ36554383
RAP74 induces promoter contacts by RNA polymerase II upstream and downstream of a DNA bend centered on the TATA box.Q36649506
Factors involved in specific transcription by mammalian RNA polymerase II: role of transcription factors IIA, IID, and IIB during formation of a transcription-competent complexQ36774375
A carboxyl-terminal-domain kinase associated with RNA polymerase II transcription factor delta from rat liverQ37151396
RNA polymerase II.Q37285299
Mechanism of promoter selection by RNA polymerase II: mammalian transcription factors alpha and beta gamma promote entry of polymerase into the preinitiation complexQ37548660
Ecdysone-inducible gene expression in mammalian cells and transgenic mice.Q37651825
Initiation of transcription by RNA polymerase II is limited by melting of the promoter DNA in the region immediately upstream of the initiation site.Q38301596
Mechanism of promoter melting by the xeroderma pigmentosum complementation group B helicase of transcription factor IIH revealed by protein-DNA photo-cross-linkingQ39456501
Photo-cross-linking of a purified preinitiation complex reveals central roles for the RNA polymerase II mobile clamp and TFIIE in initiation mechanisms.Q40468992
A portion of RNA polymerase II molecules has a component essential for stress responses and stress survivalQ40656654
The requirement for the basal transcription factor IIE is determined by the helical stability of promoter DNA.Q40805836
Opening of an RNA polymerase II promoter occurs in two distinct steps and requires the basal transcription factors IIE and IIH.Q41064467
Wrapping of promoter DNA around the RNA polymerase II initiation complex induced by TFIIF.Q41361072
Regulation of TFIIH ATPase and kinase activities by TFIIE during active initiation complex formationQ41481294
Yeast RNA polymerase II at 5 A resolutionQ41692445
CTD kinase associated with yeast RNA polymerase II initiation factor b.Q44229085
Elongation by Drosophila RNA polymerase II. Transcription of 3'-extended DNA templates.Q44751528
A multisubunit transcription factor essential for accurate initiation by RNA polymerase II.Q45155394
Formation and crystallization of yeast RNA polymerase II elongation complexes.Q45937633
Defective transcriptional activation by diverse VP16 mutants associated with a common inability to form open promoter complexes.Q46165723
Purification using polyethylenimine precipitation and low molecular weight subunit analyses of calf thymus and wheat germ DNA-dependent RNA polymerase IIQ47329487
Reduced binding of TFIID to transcriptionally compromised mutants of VP16.Q54251780
Human general transcription factor IIH phosphorylates the C-terminal domain of RNA polymerase IIQ59098636
Purification and interaction properties of the human RNA polymerase B(II) general transcription factor BTF2Q68041082
Factors involved in specific transcription by mammalian RNA polymerase II. Purification and subunit composition of transcription factor IIFQ68499638
The activity of COOH-terminal domain phosphatase is regulated by a docking site on RNA polymerase II and by the general transcription factors IIF and IIBQ72350338
Drug target validation and identification of secondary drug target effects using DNA microarraysQ77534975
P433issue16
P407language of work or nameEnglishQ1860
P921main subjectcell biologyQ7141
Rba50p YDR527WQ27549132
P304page(s)7043-58
P577publication date2004-08-01
P1433published inMolecular and Cellular BiologyQ3319478
P1476titleRPAP1, a novel human RNA polymerase II-associated protein affinity purified with recombinant wild-type and mutated polymerase subunits
P478volume24