| scholarly article | Q13442814 |
| P819 | ADS bibcode | 2002Sci...296.1280M |
| P356 | DOI | 10.1126/SCIENCE.1069594 |
| P3181 | OpenCitations bibliographic resource ID | 715716 |
| P698 | PubMed publication ID | 12016306 |
| P5875 | ResearchGate publication ID | 11355986 |
| P2093 | author name string | Katsuhiko S Murakami | |
| Seth A Darst | |||
| Shoko Masuda | |||
| P433 | issue | 5571 | |
| P407 | language of work or name | English | Q1860 |
| P304 | page(s) | 1280-4 | |
| P577 | publication date | 2002-05-17 | |
| P1433 | published in | Science | Q192864 |
| P1476 | title | Structural basis of transcription initiation: RNA polymerase holoenzyme at 4 A resolution | |
| P478 | volume | 296 |
| Q37378015 | 6S RNA binding to Esigma(70) requires a positively charged surface of sigma(70) region 4.2. |
| Q27647837 | A Conserved Structural Module Regulates Transcriptional Responses to Diverse Stress Signals in Bacteria |
| Q34192645 | A Mutation within the β Subunit ofEscherichia coliRNA Polymerase Impairs Transcription from Bacteriophage T4 Middle Promoters |
| Q47373983 | A Thermus phage protein inhibits host RNA polymerase by preventing template DNA strand loading during open promoter complex formation |
| Q37074111 | A basic/hydrophobic cleft of the T4 activator MotA interacts with the C-terminus of E.coli sigma70 to activate middle gene transcription |
| Q40408687 | A chaperone network controls the heat shock response in E. coli |
| Q35063168 | A critical role of downstream RNA polymerase-promoter interactions in the formation of initiation complex |
| Q37180573 | A full-length group 1 bacterial sigma factor adopts a compact structure incompatible with DNA binding |
| Q54253143 | A hypothetical hierarchical mechanism of the self-assembly of the Escherichia coli RNA polymerase σ(70) subunit. |
| Q36505583 | A mutation of the RNA polymerase β' subunit (rpoC) confers cephalosporin resistance in Bacillus subtilis. |
| Q34025901 | A negative feedback loop that limits the ectopic activation of a cell type-specific sporulation sigma factor of Bacillus subtilis |
| Q37981476 | A nexus for gene expression-molecular mechanisms of Spt5 and NusG in the three domains of life |
| Q40246130 | A non-canonical multisubunit RNA polymerase encoded by the AR9 phage recognizes the template strand of its uracil-containing promoters. |
| Q37358113 | A regulator that inhibits transcription by targeting an intersubunit interaction of the RNA polymerase holoenzyme. |
| Q33276404 | A sigma-core interaction of the RNA polymerase holoenzyme that enhances promoter escape |
| Q27664153 | A structural model of anti-anti-σ inhibition by a two-component receiver domain: the PhyR stress response regulator |
| Q36980036 | Advances in bacterial promoter recognition and its control by factors that do not bind DNA. |
| Q33762995 | Altering the interaction between sigma70 and RNA polymerase generates complexes with distinct transcription-elongation properties |
| Q42121413 | An amino acid substitution at position 740 in sigma70 of Ralstonia solanacearum strain OE1-1 affects its in planta growth |
| Q27642106 | An extended winged helix domain in general transcription factor E/IIE alpha |
| Q35965155 | An intersubunit contact stimulating transcription initiation by E coli RNA polymerase: interaction of the alpha C-terminal domain and sigma region 4. |
| Q44780532 | An unsubstituted C2 hydrogen of adenine is critical and sufficient at the -11 position of a promoter to signal base pair deformation |
| Q42702228 | Antibiotics trapping transcription initiation intermediates: To melt or to bend, what's first? |
| Q38332942 | Aptamers to Escherichia coli core RNA polymerase that sense its interaction with rifampicin, sigma-subunit and GreB. |
| Q37625517 | Archaeal RNA polymerase |
| Q37830691 | Archaeal RNA polymerase and transcription regulation. |
| Q38077255 | Archaeology of RNA polymerase: factor swapping during the transcription cycle. |
| Q27641248 | Architecture of initiation-competent 12-subunit RNA polymerase II |
| Q27667221 | Architecture of the RNA polymerase-Spt4/5 complex and basis of universal transcription processivity |
| Q44720031 | Assay of Escherichia coli RNA polymerase: sigma-core interactions |
| Q33580382 | Association of RNA polymerase with transcribed regions in Escherichia coli |
| Q37260116 | Asynchronous basepair openings in transcription initiation: CRP enhances the rate-limiting step. |
| Q40736935 | Autonomous function of the amino-terminal inhibitory domain of TAF1 in transcriptional regulation |
| Q28069377 | Bacterial RNA Polymerase-DNA Interaction-The Driving Force of Gene Expression and the Target for Drug Action |
| Q34531247 | Bacterial RNA polymerases: the wholo story |
| Q27012703 | Bacterial Sigma Factors and Anti-Sigma Factors: Structure, Function and Distribution |
| Q35604344 | Bacteriophage T4 MotA activator and the β-flap tip of RNA polymerase target the same set of σ70 carboxyl-terminal residues |
| Q35550574 | Bacteriophage-Induced Modifications of Host RNA Polymerase |
| Q38047699 | Basic mechanisms of RNA polymerase II activity and alteration of gene expression in Saccharomyces cerevisiae |
| Q37622927 | Binding of the C-terminal domain of the alpha subunit of RNA polymerase to the phage mu middle promoter |
| Q41679784 | Binding of the unorthodox transcription activator, Crl, to the components of the transcription machinery |
| Q28486907 | CarD is an essential regulator of rRNA transcription required for Mycobacterium tuberculosis persistence |
| Q38219797 | Cell-surface signaling in Pseudomonas: stress responses, iron transport, and pathogenicity |
| Q33934618 | Central role of the RNA polymerase trigger loop in intrinsic RNA hydrolysis. |
| Q43867432 | Characterization of single and double inactivation strains reveals new physiological roles for group 2 sigma factors in the cyanobacterium Synechocystis sp. PCC 6803. |
| Q54435236 | Chemical linkage at allosteric activation of E. coli cAMP receptor protein. |
| Q51601795 | Collective motions of RNA polymerases. Analysis of core enzyme, elongation complex and holoenzyme. |
| Q35909941 | Comparative Study of Cyanobacterial and E. coli RNA Polymerases: Misincorporation, Abortive Transcription, and Dependence on Divalent Cations |
| Q27664611 | Complete Structural Model of Escherichia coli RNA Polymerase from a Hybrid Approach |
| Q27641250 | Complete, 12-subunit RNA polymerase II at 4.1-Å resolution: Implications for the initiation of transcription |
| Q54537297 | Conformational flexibility in sigma70 region 2 during transcription initiation. |
| Q49610071 | Conformational heterogeneity and bubble dynamics in single bacterial transcription initiation complexes. |
| Q42425339 | Conformational heterogeneity in RNA polymerase observed by single-pair FRET microscopy. |
| Q40270839 | Conserved region 2.1 of Escherichia coli heat shock transcription factor sigma32 is required for modulating both metabolic stability and transcriptional activity |
| Q34656119 | Control of the timing of promoter escape and RNA catalysis by the transcription factor IIb fingertip |
| Q40642978 | Crosslink Mapping at Amino Acid-Base Resolution Reveals the Path of Scrunched DNA in Initial Transcribing Complexes |
| Q27646986 | Crystal Structure of the Escherichia coli Regulator of σ70, Rsd, in Complex with σ70 Domain 4 |
| Q38949228 | Crystal structure of Aquifex aeolicus σN bound to promoter DNA and the structure of σN-holoenzyme. |
| Q27641084 | Crystal structure of Escherichia coli sigmaE with the cytoplasmic domain of its anti-sigma RseA |
| Q27666144 | Crystal structure of bacterial RNA polymerase bound with a transcription inhibitor protein |
| Q35647440 | Crystal structure of the bacteriophage T4 late-transcription coactivator gp33 with the β-subunit flap domain of Escherichia coli RNA polymerase |
| Q28902946 | Crystal structure of the flagellar sigma/anti-sigma complex sigma(28)/FlgM reveals an intact sigma factor in an inactive conformation |
| Q27700188 | Crystal structures of the E. coli transcription initiation complexes with a complete bubble |
| Q54512749 | Crystallographic analysis of Thermus aquaticus RNA polymerase holoenzyme and a holoenzyme/promoter DNA complex. |
| Q100316448 | CueR activates transcription through a DNA distortion mechanism |
| Q34025418 | Deletion of switch 3 results in an archaeal RNA polymerase that is defective in transcript elongation |
| Q64072353 | Design and synthesis of synthetic UP elements for modulation of gene expression in |
| Q37279503 | Design of orthogonal genetic switches based on a crosstalk map of σs, anti-σs, and promoters |
| Q50041656 | Development of cyclic AMP receptor protein-based artificial transcription factor for intensifying gene expression |
| Q35121094 | Different requirements for σ Region 4 in BvgA activation of the Bordetella pertussis promoters P(fim3) and P(fhaB). |
| Q46050828 | Different types of pausing modes during transcription initiation. |
| Q35458127 | Differential role of base pairs on gal promoters strength |
| Q35547079 | Dissection of recognition determinants of Escherichia coli sigma32 suggests a composite -10 region with an 'extended -10' motif and a core -10 element |
| Q34189098 | Distance-restrained docking of rifampicin and rifamycin SV to RNA polymerase using systematic FRET measurements: developing benchmarks of model quality and reliability |
| Q42182788 | Distinct functions of regions 1.1 and 1.2 of RNA polymerase σ subunits from Escherichia coli and Thermus aquaticus in transcription initiation. |
| Q38735233 | Distinct functions of the RNA polymerase σ subunit region 3.2 in RNA priming and promoter escape |
| Q33262159 | Disulfide cross-linking indicates that FlgM-bound and free sigma28 adopt similar conformations |
| Q101121230 | Diverse and unified mechanisms of transcription initiation in bacteria |
| Q44041884 | DnaK-sigma 32 interaction is temperature-dependent. Implication for the mechanism of heat shock response |
| Q57636089 | Effects of Discontinuities in the DNA Template on Abortive Initiation and Promoter Escape byEscherichia coliRNA Polymerase |
| Q35013133 | Elongation complexes of Thermus thermophilus RNA polymerase that possess distinct translocation conformations |
| Q35185286 | Elucidation of sigma factor-associated networks in Pseudomonas aeruginosa reveals a modular architecture with limited and function-specific crosstalk. |
| Q42616877 | Enhancer-dependent transcription by bacterial RNA polymerase: the beta subunit downstream lobe is used by sigma 54 during open promoter complex formation. |
| Q38320906 | Escherichia coli RNA polymerase contacts outside the -10 promoter element are not essential for promoter melting |
| Q35220690 | Escherichia coli RNA polymerase recognition of a sigma70-dependent promoter requiring a -35 DNA element and an extended -10 TGn motif |
| Q42602040 | Evidence for a tyrosine-adenine stacking interaction and for a short-lived open intermediate subsequent to initial binding of Escherichia coli RNA polymerase to promoter DNA |
| Q34430675 | Evolutionary expansion of a regulatory network by counter-silencing |
| Q50650522 | Expression and use of superfolder green fluorescent protein at high temperatures in vivo: a tool to study extreme thermophile biology. |
| Q52372962 | Fidaxomicin jams Mycobacterium tuberculosis RNA polymerase motions needed for initiation via RbpA contacts. |
| Q36491213 | Fine structure of the promoter-sigma region 1.2 interaction |
| Q54512631 | Fluorescence resonance energy transfer (FRET) in analysis of transcription-complex structure and function. |
| Q28757627 | Formation of the open complex by bacterial RNA polymerase--a quantitative model |
| Q36226165 | Functional dissection of the catalytic mechanism of mammalian RNA polymerase II. |
| Q40763314 | Functional interaction between TFIIB and the Rpb2 subunit of RNA polymerase II: implications for the mechanism of transcription initiation |
| Q36621454 | Functional modules of sigma factor regulons guarantee adaptability and evolvability |
| Q27939941 | Functional organization of the Rpb5 subunit shared by the three yeast RNA polymerases |
| Q37308612 | Genetic assays to define and characterize protein-protein interactions involved in gene regulation |
| Q33783107 | Genetic evidence for a novel interaction between transcriptional activator SoxS and region 4 of the σ(70) subunit of RNA polymerase at class II SoxS-dependent promoters in Escherichia coli |
| Q36219845 | Genome-wide mapping of mutations at single-nucleotide resolution for protein, metabolic and genome engineering. |
| Q28833292 | High Production of 3-Hydroxypropionic Acid in Klebsiella pneumoniae by Systematic Optimization of Glycerol Metabolism |
| Q39282647 | How to switch the motor on: RNA polymerase initiation steps at the single-molecule level |
| Q27639824 | Identification and structure of the anti-sigma factor-binding domain of the disulphide-stress regulated sigma factor sigma(R) from Streptomyces coelicolor |
| Q34892837 | In vitro properties of RpoS (sigma(S)) mutants of Escherichia coli with postulated N-terminal subregion 1.1 or C-terminal region 4 deleted |
| Q41823965 | In vivo assembly and single-molecule characterization of the transcription machinery from Shewanella oneidensis MR-1. |
| Q42606479 | Inactivation and destruction by KMnO4 of Escherichia coli RNA polymerase open transcription complex: recommendations for footprinting experiments |
| Q42280816 | Influence of DNA template choice on transcription and inhibition of Escherichia coli RNA polymerase |
| Q24644413 | Inhibition of bacterial RNA polymerase by streptolydigin: stabilization of a straight-bridge-helix active-center conformation |
| Q27026444 | Initial events in bacterial transcription initiation |
| Q41555438 | Initial transcribed region sequences influence the composition and functional properties of the bacterial elongation complex |
| Q41482256 | Insights into Gene Expression and Packaging from Computer Simulations |
| Q37272203 | Insights into the mechanism of initial transcription in Escherichia coli RNA polymerase |
| Q42949442 | Interactions between the Rhodobacter sphaeroides ECF sigma factor, sigma(E), and its anti-sigma factor, ChrR. |
| Q54286054 | Kinetics of promoter escape by bacterial RNA polymerase: effects of promoter contacts and transcription bubble collapse. |
| Q42068625 | Lineage-specific amino acid substitutions in region 2 of the RNA polymerase sigma subunit affect the temperature of promoter opening |
| Q27938792 | Loss of the Rpb4/Rpb7 Subcomplex in a Mutant Form of the Rpb6 Subunit Shared by RNA Polymerases I, II, and III |
| Q31134300 | Luminescence resonance energy transfer-based high-throughput screening assay for inhibitors of essential protein-protein interactions in bacterial RNA polymerase |
| Q37268676 | Mapping protein-protein interactions by localized oxidation: consequences of the reach of hydroxyl radical |
| Q42599275 | Mapping sigma 54-RNA polymerase interactions at the -24 consensus promoter element. |
| Q36228825 | Mechanism of bacterial transcription initiation: RNA polymerase - promoter binding, isomerization to initiation-competent open complexes, and initiation of RNA synthesis |
| Q45282565 | Mechanistic differences in promoter DNA melting by Thermus aquaticus and Escherichia coli RNA polymerases |
| Q37375642 | Minimal promoter systems reveal the importance of conserved residues in the B-finger of human transcription factor IIB. |
| Q37106646 | Modus operandi of the bacterial RNA polymerase containing the sigma54 promoter-specificity factor |
| Q75231697 | Molecular analysis of activator engagement with RNA polymerase |
| Q34011655 | Molecular basis of RNA polymerase promoter specificity switch revealed through studies of Thermus bacteriophage transcription regulator |
| Q33618241 | Molecular evolution of multisubunit RNA polymerases: structural analysis |
| Q39152284 | Molecular mechanism of transcription inhibition by phage T7 gp2 protein |
| Q34108549 | Multicenter study for defining the breakpoint for rifampin resistance in Neisseria meningitidis by rpoB sequencing |
| Q34267512 | Multiple Sigma Subunits and the Partitioning of Bacterial Transcription Space |
| Q78494964 | Multiple roles of the RNA polymerase beta subunit flap domain in sigma 54-dependent transcription |
| Q34146332 | Multiple roles of the RNA polymerase {beta}' SW2 region in transcription initiation, promoter escape, and RNA elongation |
| Q36977152 | Multiscale spatial organization of RNA polymerase in Escherichia coli |
| Q37372690 | Mutational analysis of Escherichia coli sigma28 and its target promoters reveals recognition of a composite -10 region, comprised of an 'extended -10' motif and a core -10 element. |
| Q41903529 | Mutational analysis of an extracytoplasmic-function sigma factor to investigate its interactions with RNA polymerase and DNA. |
| Q35222379 | Mutational analysis of sigma70 region 4 needed for appropriation by the bacteriophage T4 transcription factors AsiA and MotA. |
| Q44259001 | Mutational and functional analysis of a segment of the sigma family bacteriophage T4 late promoter recognition protein gp55. |
| Q34406989 | Mutations enabling displacement of tryptophan by 4-fluorotryptophan as a canonical amino acid of the genetic code |
| Q35921461 | Mutations in rpoBC suppress the defects of a Sinorhizobium meliloti relA mutant |
| Q44195387 | Mutations of bacterial RNA polymerase leading to resistance to microcin j25. |
| Q36144874 | Mycobacterium tuberculosis RbpA protein is a new type of transcriptional activator that stabilizes the σ A-containing RNA polymerase holoenzyme |
| Q39997903 | Myxopyronin: a punch in the jaws of bacterial RNA polymerase. |
| Q37021534 | Nascent RNA length dictates opposing effects of NusA on antitermination |
| Q37318660 | New ex vivo reporter assay system reveals that σ factors of an unculturable pathogen control gene regulation involved in the host switching between insects and plants. |
| Q36347844 | New insights into the mechanism of initial transcription: the T7 RNA polymerase mutant P266L transitions to elongation at longer RNA lengths than wild type |
| Q38534594 | Nickel-responsive transcriptional regulators |
| Q39984465 | Nucleotide-dependent interactions between a fork junction-RNA polymerase complex and an AAA+ transcriptional activator protein |
| Q33934871 | One-step DNA melting in the RNA polymerase cleft opens the initiation bubble to form an unstable open complex |
| Q24633938 | Opening and closing of the bacterial RNA polymerase clamp |
| Q34875804 | Organization of an activator-bound RNA polymerase holoenzyme |
| Q30368988 | Overview of protein structural and functional folds. |
| Q37124879 | Phage-encoded inhibitor of Staphylococcus aureus transcription exerts context-dependent effects on promoter function in a modified Escherichia coli-based transcription system |
| Q40468992 | Photo-cross-linking of a purified preinitiation complex reveals central roles for the RNA polymerase II mobile clamp and TFIIE in initiation mechanisms. |
| Q36759096 | Plant sigma factors and their role in plastid transcription. |
| Q88795755 | Possible roles of σ-dependent RNA polymerase pausing in transcription regulation |
| Q54512741 | Preparation and characterization of recombinant Thermus aquaticus RNA polymerase. |
| Q36580540 | Preparation and preliminary X-ray diffraction analysis of crystals of bacterial flagellar sigma factor sigma 28 in complex with the sigma 28-binding region of its antisigma factor, FlgM |
| Q41902743 | Prevalence of RNA polymerase stalling at Escherichia coli promoters after open complex formation |
| Q44720075 | Principles and methods of affinity cleavage in studying transcription |
| Q41514407 | Probing DNA binding, DNA opening, and assembly of a downstream clamp/jaw in Escherichia coli RNA polymerase-lambdaP(R) promoter complexes using salt and the physiological anion glutamate |
| Q38346162 | Probing the role of region 2 of Escherichia coli sigma 70 in nucleation and maintenance of the single-stranded DNA bubble in RNA polymerase-promoter open complexes |
| Q36594585 | Promoter activation by repositioning of RNA polymerase |
| Q45995106 | Promoter architecture and response to a positive regulator of archaeal transcription. |
| Q34816592 | Promoter clearance and escape in prokaryotes |
| Q34004968 | Promoter melting triggered by bacterial RNA polymerase occurs in three steps |
| Q40935619 | Promoter spacer DNA plays an active role in integrating the functional consequences of RNA polymerase contacts with -10 and -35 promoter elements |
| Q27675215 | Promoter-Specific Transcription Inhibition in Staphylococcus aureus by a Phage Protein |
| Q34001711 | Properties of Bacillus subtilis sigma A factors with region 1.1 and the conserved Arg-103 at the N terminus of region 1.2 deleted |
| Q54442568 | Properties of RNA polymerase bypass mutants: implications for the role of ppGpp and its co-factor DksA in controlling transcription dependent on sigma54. |
| Q78488186 | Protein-protein and protein-DNA interactions of sigma70 region 4 involved in transcription activation by lambdacI |
| Q28484727 | Proteome organization in a genome-reduced bacterium |
| Q37273159 | RNA Polymerase Pausing during Initial Transcription |
| Q92871511 | RNA Polymerase: Step-by-Step Kinetics and Mechanism of Transcription Initiation |
| Q90008722 | RNA extension drives a stepwise displacement of an initiation-factor structural module in initial transcription |
| Q35162629 | RNA polymerase II at initiation |
| Q38045685 | RNA polymerase II transcription: structure and mechanism |
| Q27657756 | RNA polymerase II-TFIIB structure and mechanism of transcription initiation |
| Q41628900 | RNA polymerase II/TFIIF structure and conserved organization of the initiation complex |
| Q35121887 | RNA polymerase holoenzyme: structure, function and biological implications |
| Q40197974 | RNA polymerase motions during promoter melting. |
| Q24802311 | RNA polymerase mutants defective in the initiation of transcription-coupled DNA repair |
| Q39895370 | RNA polymerase mutations that impair conversion to a termination-resistant complex by Q antiterminator proteins |
| Q38121625 | RNA polymerase: in search of promoters |
| Q42957000 | RNA-mediated destabilization of the sigma(70) region 4/beta flap interaction facilitates engagement of RNA polymerase by the Q antiterminator |
| Q27934170 | RPAP1, a novel human RNA polymerase II-associated protein affinity purified with recombinant wild-type and mutated polymerase subunits |
| Q35808746 | Real-time footprinting of DNA in the first kinetically significant intermediate in open complex formation by Escherichia coli RNA polymerase |
| Q91975437 | Recent Advances in Understanding σ70-Dependent Transcription Initiation Mechanisms |
| Q42002605 | Region 1.2 of the RNA polymerase sigma subunit controls recognition of the -10 promoter element |
| Q57469398 | Region 3.2 of the σ factor controls the stability of rRNA promoter complexes and potentiates their repression by DksA |
| Q36662639 | Regulation of bacterial RNA polymerase sigma factor activity: a structural perspective. |
| Q36208841 | Regulation of mammalian transcription by Gdown1 through a novel steric crosstalk revealed by cryo-EM |
| Q34659757 | Regulation of promoter-proximal transcription elongation: enhanced DNA scrunching drives λQ antiterminator-dependent escape from a σ70-dependent pause. |
| Q34055944 | Response of RNA polymerase to ppGpp: requirement for the omega subunit and relief of this requirement by DksA. |
| Q36081351 | Rifampin Resistance rpoB Alleles or Multicopy Thioredoxin/Thioredoxin Reductase Suppresses the Lethality of Disruption of the Global Stress Regulator spx in Staphylococcus aureus |
| Q35010831 | Role of the RNA polymerase sigma subunit in transcription initiation |
| Q46899395 | Role of the spacer between the -35 and -10 regions in sigmas promoter selectivity in Escherichia coli |
| Q41194509 | RpoN Modulates Carbapenem Tolerance in Pseudomonas aeruginosa through Pseudomonas Quinolone Signal and PqsE. |
| Q43244277 | Rsd family proteins make simultaneous interactions with regions 2 and 4 of the primary sigma factor |
| Q42574260 | Salerno's model of DNA re-analysed: could breather solitons have biological significance? |
| Q27655553 | Schizosacharomyces pombe RNA polymerase II at 3.6-A resolution |
| Q35889596 | Seeing is believing: the impact of structural genomics on antimicrobial drug discovery |
| Q39832015 | Sequential recognition of two distinct sites in sigma(S) by the proteolytic targeting factor RssB and ClpX. |
| Q28765495 | Sigma factors for cyanobacterial transcription |
| Q54512648 | Single DNA molecule analysis of transcription complexes. |
| Q42693159 | Single-strand promoter traps for bacterial RNA polymerase. |
| Q42137902 | Solute probes of conformational changes in open complex (RPo) formation by Escherichia coli RNA polymerase at the lambdaPR promoter: evidence for unmasking of the active site in the isomerization step and for large-scale coupled folding in the subse |
| Q38301292 | Specific recognition of the -10 promoter element by the free RNA polymerase sigma subunit |
| Q35012148 | Stationary phase gene regulation: what makes an Escherichia coli promoter sigmaS-selective? |
| Q36565042 | Still looking for the magic spot: the crystallographically defined binding site for ppGpp on RNA polymerase is unlikely to be responsible for rRNA transcription regulation |
| Q27653075 | Structural Basis for DNA-Hairpin Promoter Recognition by the Bacteriophage N4 Virion RNA Polymerase |
| Q27660054 | Structural and Biochemical Bases for the Redox Sensitivity of Mycobacterium tuberculosis RslA |
| Q27670850 | Structural and Mechanistic Basis for the Inhibition of Escherichia coli RNA Polymerase by T7 Gp2 |
| Q27681958 | Structural basis for promoter specificity switching of RNA polymerase by a phage factor |
| Q27678856 | Structural basis for sigma factor mimicry in the general stress response of Alphaproteobacteria |
| Q27664035 | Structural basis for the bacterial transcription-repair coupling factor/RNA polymerase interaction |
| Q27689853 | Structural basis for the redox sensitivity of the Mycobacterium tuberculosis SigK-RskA σ-anti-σ complex |
| Q91809414 | Structural basis for transcription antitermination at bacterial intrinsic terminator |
| Q64108730 | Structural basis for transcription initiation by bacterial ECF σ factors |
| Q35129152 | Structural basis for transcription reactivation by RapA |
| Q61796620 | Structural basis of ECF-σ-factor-dependent transcription initiation |
| Q27678860 | Structural basis of a protein partner switch that regulates the general stress response of α-proteobacteria |
| Q24608460 | Structural basis of transcription initiation |
| Q27684481 | Structural basis of transcription initiation by bacterial RNA polymerase holoenzyme |
| Q27643138 | Structural basis of transcription: an RNA polymerase II-TFIIB cocrystal at 4.5 Angstroms |
| Q27676112 | Structural basis of transcriptional pausing in bacteria |
| Q34669788 | Structural biology of bacterial RNA polymerase |
| Q54708656 | Structural biology: New beginnings for transcription. |
| Q28757373 | Structural confirmation of a bent and open model for the initiation complex of T7 RNA polymerase |
| Q41627479 | Structural insights into the activity of enhancer-binding proteins. |
| Q51149172 | Structural insights into the unique mechanism of transcription activation by Caulobacter crescentus GcrA. |
| Q36416676 | Structural perspective on mutations affecting the function of multisubunit RNA polymerases |
| Q30332062 | Structural proteomics: the potential of high-throughput structure determination. |
| Q92503263 | Structural snapshots of actively transcribing influenza polymerase |
| Q35740383 | Structural, functional, and genetic analyses of the actinobacterial transcription factor RbpA |
| Q51107154 | Structure and Function of RNA Polymerases and the Transcription Machineries. |
| Q46802691 | Structure and carboxyl-terminal domain (CTD) binding of the Set2 SRI domain that couples histone H3 Lys36 methylation to transcription |
| Q27683438 | Structure and function of the initially transcribing RNA polymerase II-TFIIB complex |
| Q41629112 | Structure and function of the transcription elongation factor GreB bound to bacterial RNA polymerase |
| Q35758805 | Structure and mechanism of the RNA polymerase II transcription machinery |
| Q42637839 | Structure of RNA polymerase bound to ribosomal 30S subunit |
| Q27639929 | Structure of a T7 RNA polymerase elongation complex at 2.9 A resolution |
| Q36120805 | Structure of a bacterial RNA polymerase holoenzyme open promoter complex |
| Q27658448 | Structure of an RNA Polymerase II-TFIIB Complex and the Transcription Initiation Mechanism |
| Q39750259 | Structure-Function Studies of Escherichia coli RpoH (σ 32 ) by In Vitro Linker Insertion Mutagenesis |
| Q92309893 | Structures and mechanism of transcription initiation by bacterial ECF factors |
| Q24594359 | Structures of RNA polymerase-antibiotic complexes |
| Q38174426 | Studying DNA-protein interactions with single-molecule Förster resonance energy transfer |
| Q44462825 | Substitutions in the Escherichia coli RNA polymerase sigma70 factor that affect recognition of extended -10 elements at promoters |
| Q33758495 | Substrate requirements for regulated intramembrane proteolysis of Bacillus subtilis pro-sigmaK |
| Q27659599 | T7 phage protein Gp2 inhibits the Escherichia coli RNA polymerase by antagonizing stable DNA strand separation near the transcription start site |
| Q35758150 | TFB1 or TFB2 is sufficient for Thermococcus kodakaraensis viability and for basal transcription in vitro |
| Q28544090 | TFIIB is only ∼9 Å away from the 5'-end of a trimeric RNA primer in a functional RNA polymerase II preinitiation complex |
| Q34479824 | Temporal regulation of gene expression of the Thermus thermophilus bacteriophage P23-45. |
| Q42134644 | The -11A of promoter DNA and two conserved amino acids in the melting region of sigma70 both directly affect the rate limiting step in formation of the stable RNA polymerase-promoter complex, but they do not necessarily interact |
| Q45993100 | The C-terminal RpoN domain of sigma54 forms an unpredicted helix-turn-helix motif similar to domains of sigma70. |
| Q92933287 | The C-terminal tail of the yeast mitochondrial transcription factor Mtf1 coordinates template strand alignment, DNA scrunching and timely transition into elongation |
| Q39734953 | The FecI extracytoplasmic-function sigma factor of Escherichia coli interacts with the beta' subunit of RNA polymerase |
| Q27677778 | The Mechanism of E. coli RNA Polymerase Regulation by ppGpp Is Suggested by the Structure of their Complex |
| Q24643039 | The RNA polymerase "switch region" is a target for inhibitors |
| Q24656659 | The RNA polymerase II trigger loop functions in substrate selection and is directly targeted by alpha-amanitin |
| Q25257778 | The Rhizobium etli sigma70 (SigA) factor recognizes a lax consensus promoter |
| Q34400749 | The TFIIB Tip Domain Couples Transcription Initiation to Events Involved in RNA Processing |
| Q27649741 | The X-ray crystal structure of RNA polymerase from Archaea |
| Q40578873 | The Xp10 Bacteriophage Protein P7 Inhibits Transcription by the Major and Major Variant Forms of the Host RNA Polymerase via a Common Mechanism. |
| Q27677480 | The actinobacterial transcription factor RbpA binds to the principal sigma subunit of RNA polymerase |
| Q28077256 | The bacterial enhancer-dependent RNA polymerase |
| Q34353980 | The bacteriophage T4 inhibitor and coactivator AsiA inhibits Escherichia coli RNA Polymerase more rapidly in the absence of sigma70 region 1.1: evidence that region 1.1 stabilizes the interaction between sigma70 and core |
| Q36926930 | The bacteriophage lambda Q antiterminator protein contacts the beta-flap domain of RNA polymerase. |
| Q38011269 | The conflict between DNA replication and transcription |
| Q34559717 | The core-independent promoter-specific interaction of primary sigma factor |
| Q89113526 | The crystal structure of the RsbN-σBldN complex from Streptomyces venezuelae defines a new structural class of anti-σ factor |
| Q43020356 | The cyanobacterial principal sigma factor region 1.1 is involved in DNA-binding in the free form and in transcription activity as holoenzyme. |
| Q33722783 | The effects of upstream DNA on open complex formation by Escherichia coli RNA polymerase |
| Q39100789 | The essential activities of the bacterial sigma factor |
| Q33934477 | The interaction between sigma70 and the beta-flap of Escherichia coli RNA polymerase inhibits extension of nascent RNA during early elongation |
| Q34611578 | The interaction of Bacillus subtilis sigmaA with RNA polymerase |
| Q24681447 | The molecular basis of eukaryotic transcription |
| Q48328874 | The molecular basis of eukaryotic transcription (Nobel Lecture). |
| Q37070631 | The promoter spacer influences transcription initiation via sigma70 region 1.1 of Escherichia coli RNA polymerase |
| Q47960626 | The reduction in σ-promoter recognition flexibility as induced by core RNAP is required for σ to discern the optimal promoter spacing |
| Q35701605 | The regulation of bacterial transcription initiation |
| Q37357569 | The role of RNA polymerase sigma subunit in promoter-independent initiation of transcription. |
| Q38039049 | The role of bacterial enhancer binding proteins as specialized activators of σ54-dependent transcription |
| Q44209223 | The role of the alarmone (p)ppGpp in sigma N competition for core RNA polymerase. |
| Q38400726 | The sabotage of the bacterial transcription machinery by a small bacteriophage protein. |
| Q36226866 | The second paradigm for activation of transcription. |
| Q47661886 | The sigma 70 subunit of RNA polymerase induces lacUV5 promoter-proximal pausing of transcription |
| Q47661898 | The sigma 70 subunit of RNA polymerase mediates a promoter-proximal pause at the lac promoter. |
| Q43445695 | The sigma(70) subunit of RNA polymerase is contacted by the (lambda)Q antiterminator during early elongation |
| Q21999783 | The sigma70 family of sigma factors |
| Q27652631 | The structure of a transcribing T7 RNA polymerase in transition from initiation to elongation |
| Q27671645 | The structure of a transcription activation subcomplex reveals how σ70is recruited to PhoB promoters |
| Q35018019 | The third dimension for protein interactions and complexes. |
| Q42118811 | The transcription inhibitor lipiarmycin blocks DNA fitting into the RNA polymerase catalytic site |
| Q39986911 | The σ70 region 1.2 regulates promoter escape by unwinding DNA downstream of the transcription start site |
| Q42599486 | Thermoirreversible and Thermoreversible Promoter Opening by Two Escherichia coli RNA Polymerase Holoenzymes |
| Q46946945 | Topography of the euryarchaeal transcription initiation complex |
| Q53115968 | Towards quantitative analysis of gene regulation by enhancers. |
| Q37034702 | Transcription initiation by mix and match elements: flexibility for polymerase binding to bacterial promoters |
| Q34332129 | Transcription of the T4 late genes |
| Q34332135 | Transcriptional control in the prereplicative phase of T4 development |
| Q39680309 | Uncovering ancient transcription systems with a novel evolutionary indicator. |
| Q34870092 | Unusual interaction of RNA polymerase with the bacteriophage Mu middle promoter Pm in the absence of its activator protein Mor. |
| Q54512624 | Using a lac repressor roadblock to analyze the E. coli transcription elongation complex. |
| Q40916082 | Utilization of variably spaced promoter-like elements by the bacterial RNA polymerase holoenzyme during early elongation |
| Q38357484 | Visualizing RNA extrusion and DNA wrapping in transcription elongation complexes of bacterial and eukaryotic RNA polymerases |
| Q27322936 | Visualizing the phage T4 activated transcription complex of DNA and E. coli RNA polymerase |
| Q27676227 | X-ray Crystal Structure of Escherichia coli RNA Polymerase 70 Holoenzyme |
| Q39121534 | σ38-dependent promoter-proximal pausing by bacterial RNA polymerase |
| Q38024620 | σ70 and PhoB activator: getting a better grip. |
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