| scholarly article | Q13442814 |
| P50 | author | Pablo Chacón | Q55143757 |
| P2093 | author name string | Natacha Opalka | |
| Seth A Darst | |||
| William J Rice | |||
| Mark Chlenov | |||
| Willy Wriggers | |||
| P2860 | cites work | Bacterial RNA polymerase subunit and eukaryotic RNA polymerase subunit RPB6 are sequence, structural, and functional homologs and promote RNA polymerase assembly | Q27629277 |
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| Structural mechanism for rifampicin inhibition of bacterial rna polymerase | Q27631047 | ||
| Structural basis of transcription: RNA polymerase II at 2.8 angstrom resolution | Q27631276 | ||
| Structural basis of transcription: an RNA polymerase II elongation complex at 3.3 A resolution | Q27631280 | ||
| Structure of the bacterial RNA polymerase promoter specificity sigma subunit | Q27638714 | ||
| Crystal structure of a bacterial RNA polymerase holoenzyme at 2.6 A resolution | Q27638951 | ||
| Structural basis of transcription initiation: RNA polymerase holoenzyme at 4 A resolution | Q27639011 | ||
| Crystal structure of a transcription factor IIIB core interface ternary complex | Q27640838 | ||
| Architecture of the RNA polymerase II-TFIIS complex and implications for mRNA cleavage | Q27641834 | ||
| Crystal structure of a TFIIB-TBP-TATA-element ternary complex | Q27729899 | ||
| Crystal structure of the GreA transcript cleavage factor from Escherichia coli | Q27730368 | ||
| Crystal structure of a yeast TFIIA/TBP/DNA complex | Q27732643 | ||
| Elongation factor TFIIS contains three structural domains: solution structure of domain II | Q27733697 | ||
| Crystal structure of a sigma 70 subunit fragment from E. coli RNA polymerase | Q27733702 | ||
| Structure of the Escherichia coli RNA polymerase alpha subunit amino-terminal domain | Q27760476 | ||
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| Crystal structure of TFIID TATA-box binding protein | Q28202669 | ||
| Structure of a new nucleic-acid-binding motif in eukaryotic transcriptional elongation factor TFIIS | Q28294546 | ||
| A mechanism for all polymerases | Q29618812 | ||
| Averaging data derived from images of helical structures with different symmetries | Q30577558 | ||
| The functional and regulatory roles of sigma factors in transcription | Q33671342 | ||
| Escherichia coli transcript cleavage factors GreA and GreB stimulate promoter escape and gene expression in vivo and in vitro | Q33708650 | ||
| Eukaryotic transcriptional control | Q33803995 | ||
| Crystal structure of Thermus aquaticus core RNA polymerase at 3.3 A resolution. | Q33875224 | ||
| Architecture of RNA polymerase II and implications for the transcription mechanism | Q33899775 | ||
| Conformational flexibility of bacterial RNA polymerase. | Q34047533 | ||
| Structure of Na+,K+-ATPase at 11-A resolution: comparison with Ca2+-ATPase in E1 and E2 states | Q34175511 | ||
| Unified two-metal mechanism of RNA synthesis and degradation by RNA polymerase | Q34194387 | ||
| Bacterial RNA polymerase | Q34215835 | ||
| Intrinsic transcript cleavage activity of RNA polymerase | Q34348611 | ||
| Multisubunit RNA polymerases | Q34525904 | ||
| GreA and GreB proteins revive backtracked RNA polymerase in vivo by promoting transcript trimming | Q34684271 | ||
| Promoting elongation with transcript cleavage stimulatory factors | Q34816715 | ||
| Direct localization of a beta-subunit domain on the three-dimensional structure of Escherichia coli RNA polymerase | Q34969144 | ||
| The active site of RNA polymerase II participates in transcript cleavage within arrested ternary complexes | Q35679822 | ||
| The transcription factor TFIIS zinc ribbon dipeptide Asp-Glu is critical for stimulation of elongation and RNA cleavage by RNA polymerase II. | Q35763285 | ||
| Transcriptional arrest: Escherichia coli RNA polymerase translocates backward, leaving the 3' end of the RNA intact and extruded | Q36021413 | ||
| Identification of a 3'-->5' exonuclease activity associated with human RNA polymerase II. | Q36077476 | ||
| Modular organization of the catalytic center of RNA polymerase | Q36237766 | ||
| Genetic interaction between transcription elongation factor TFIIS and RNA polymerase II | Q36701446 | ||
| GreA protein: a transcription elongation factor from Escherichia coli | Q37213271 | ||
| Spontaneous cleavage of RNA in ternary complexes of Escherichia coli RNA polymerase and its significance for the mechanism of transcription | Q37592332 | ||
| Protein-RNA interactions in the active center of transcription elongation complex | Q37644724 | ||
| A structural model of transcription elongation | Q38310043 | ||
| Stimulation of transcript elongation requires both the zinc finger and RNA polymerase II binding domains of human TFIIS. | Q38333963 | ||
| Structure-function relationship of yeast S-II in terms of stimulation of RNA polymerase II, arrest relief, and suppression of 6-azauracil sensitivity | Q39475809 | ||
| Mechanistic studies on deoxyribonucleic acid dependent ribonucleic acid polymerase from Escherichia coli using phosphorothioate analog. 1. Initiation and pyrophosphate exchange reactions | Q40257539 | ||
| Basic mechanisms of transcript elongation and its regulation | Q41550178 | ||
| Yeast RNA polymerase II at 5 A resolution | Q41692445 | ||
| Alanine-Scanning Mutagenesis of Human Transcript Elongation Factor TFIIS | Q46811612 | ||
| The RNA polymerase II ternary complex cleaves the nascent transcript in a 3'----5' direction in the presence of elongation factor SII | Q46903974 | ||
| Visualization of the binding site for the transcript cleavage factor GreB on Escherichia coli RNA polymerase | Q47708770 | ||
| Three-dimensional structure of E. coli core RNA polymerase: promoter binding and elongation conformations of the enzyme. | Q54000068 | ||
| RNA polymerase switches between inactivated and activated states By translocating back and forth along the DNA and the RNA. | Q54564102 | ||
| The RNA-DNA hybrid maintains the register of transcription by preventing backtracking of RNA polymerase. | Q54567869 | ||
| Domain organization of Escherichia coli transcript cleavage factors GreA and GreB. | Q54569197 | ||
| Purification and assay of Escherichia coli transcript cleavage factors GreA and GreB. | Q54596379 | ||
| Promoter proximal sequences modulate RNA polymerase II elongation by a novel mechanism. | Q54661309 | ||
| Transcript cleavage factors from E. coli. | Q54662145 | ||
| Yeast Transcript Elongation Factor (TFIIS), Structure and Function | Q57412405 | ||
| Yeast Transcript Elongation Factor (TFIIS), Structure and Function | Q57412406 | ||
| Modeling Tricks and Fitting Techniques for Multiresolution Structures | Q57975968 | ||
| Swing-Gate Model of Nucleotide Entry into the RNA Polymerase Active Center | Q61718172 | ||
| Crystal structure of the yeast TFIIA/TBP/DNA complex | Q71075240 | ||
| Multiple RNA polymerase conformations and GreA: control of the fidelity of transcription | Q72593156 | ||
| Function of transcription cleavage factors GreA and GreB at a regulatory pause site | Q73406561 | ||
| The functional role of basic patch, a structural element of Escherichia coli transcript cleavage factors GreA and GreB | Q73704102 | ||
| Distinct functions of N and C-terminal domains of GreA, an Escherichia coli transcript cleavage factor | Q74345488 | ||
| Transcript cleavage by Thermus thermophilus RNA polymerase. Effects of GreA and anti-GreA factors | Q74631457 | ||
| Mapping interactions of Escherichia coli GreB with RNA polymerase and ternary elongation complexes | Q78101779 | ||
| P433 | issue | 3 | |
| P407 | language of work or name | English | Q1860 |
| P304 | page(s) | 335-345 | |
| P577 | publication date | 2003-08-01 | |
| P1433 | published in | Cell | Q655814 |
| P1476 | title | Structure and function of the transcription elongation factor GreB bound to bacterial RNA polymerase | |
| P478 | volume | 114 |
| Q33642780 | A Cre Transcription Fidelity Reporter Identifies GreA as a Major RNA Proofreading Factor in Escherichia coli |
| Q39254510 | A Rhodobacter sphaeroides protein mechanistically similar to Escherichia coli DksA regulates photosynthetic growth |
| Q24536049 | A negative elongation factor for human RNA polymerase II inhibits the anti-arrest transcript-cleavage factor TFIIS. |
| Q34478354 | A pathway branching in transcription initiation in Escherichia coli |
| Q34188111 | A single-molecule technique to study sequence-dependent transcription pausing |
| Q27681371 | A tRNA splicing operon: Archease endows RtcB with dual GTP/ATP cofactor specificity and accelerates RNA ligation |
| Q33961611 | A transcript cleavage factor of Mycobacterium tuberculosis important for its survival |
| Q36980036 | Advances in bacterial promoter recognition and its control by factors that do not bind DNA. |
| Q51747914 | Allosteric Effector ppGpp Potentiates the Inhibition of Transcript Initiation by DksA. |
| Q37111105 | Allosteric control of Escherichia coli rRNA promoter complexes by DksA. |
| Q37419132 | Allosteric control of catalysis by the F loop of RNA polymerase |
| Q58805739 | An Introduction to the Structure and Function of the Catalytic Core Enzyme of RNA Polymerase |
| Q33924072 | An insertion in the catalytic trigger loop gates the secondary channel of RNA polymerase |
| Q42910067 | Analysis of promoter targets for Escherichia coli transcription elongation factor GreA in vivo and in vitro |
| Q54467519 | Antagonistic regulation of Escherichia coli ribosomal RNA rrnB P1 promoter activity by GreA and DksA. |
| Q34327372 | Antibacterial peptide microcin J25 inhibits transcription by binding within and obstructing the RNA polymerase secondary channel |
| Q38332942 | Aptamers to Escherichia coli core RNA polymerase that sense its interaction with rifampicin, sigma-subunit and GreB. |
| Q24791153 | Archaeal phylogeny based on proteins of the transcription and translation machineries: tackling the Methanopyrus kandleri paradox |
| Q34555220 | Architecture of a transcribing-translating expressome |
| Q27641834 | Architecture of the RNA polymerase II-TFIIS complex and implications for mRNA cleavage |
| Q38043849 | Basic mechanism of transcription by RNA polymerase II. |
| Q30489776 | Biomolecular pleiomorphism probed by spatial interpolation of coarse models. |
| Q28486907 | CarD is an essential regulator of rRNA transcription required for Mycobacterium tuberculosis persistence |
| Q42573633 | Characterization of a novel RNA polymerase mutant that alters DksA activity |
| Q34448420 | Cloning, expression, purification, crystallization and initial crystallographic analysis of transcription elongation factors GreB from Escherichia coli and Gfh1 from Thermus thermophilus |
| Q28204705 | Combinatorial Control of Human RNA Polymerase II (RNAP II) Pausing and Transcript Cleavage by Transcription Factor IIF, Hepatitis δ Antigen, and Stimulatory Factor II |
| Q27664611 | Complete Structural Model of Escherichia coli RNA Polymerase from a Hybrid Approach |
| Q41546069 | Complete genome sequences and comparative genome analysis of Lactobacillus plantarum strain 5-2 isolated from fermented soybean. |
| Q91522572 | Conditional down-regulation of GreA impacts expression of rRNA and transcription factors, affecting Mycobacterium smegmatis survival |
| Q39027290 | Conflict Resolution in the Genome: How Transcription and Replication Make It Work |
| Q34656119 | Control of the timing of promoter escape and RNA catalysis by the transcription factor IIb fingertip |
| Q42917195 | Control of transcription elongation by GreA determines rate of gene expression in Streptococcus pneumoniae |
| Q33578892 | Control of transcriptional fidelity by active center tuning as derived from RNA polymerase endonuclease reaction |
| Q41896724 | Controlled interplay between trigger loop and Gre factor in the RNA polymerase active centre |
| Q27651883 | Crystal Structure of Escherichia coli Rnk, a New RNA Polymerase-Interacting Protein |
| Q40039163 | Cys-pair reporters detect a constrained trigger loop in a paused RNA polymerase. |
| Q37714219 | Diffusion of nucleoside triphosphates and role of the entry site to the RNA polymerase II active center |
| Q36464979 | Direct interactions between the coiled-coil tip of DksA and the trigger loop of RNA polymerase mediate transcriptional regulation |
| Q36337732 | DksA involvement in transcription fidelity buffers stochastic epigenetic change |
| Q34976754 | DksA is required for growth phase-dependent regulation, growth rate-dependent control, and stringent control of fis expression in Escherichia coli |
| Q33841173 | DksA potentiates direct activation of amino acid promoters by ppGpp |
| Q34788277 | Donation of catalytic residues to RNA polymerase active center by transcription factor Gre |
| Q41864803 | Dynamics of GreB-RNA polymerase interaction allow a proofreading accessory protein to patrol for transcription complexes needing rescue. |
| Q35729042 | Effects of DksA, GreA, and GreB on transcription initiation: insights into the mechanisms of factors that bind in the secondary channel of RNA polymerase |
| Q37629025 | Elongation by RNA polymerase: a race through roadblocks |
| Q37333305 | Escherichia coli DksA binds to Free RNA polymerase with higher affinity than to RNA polymerase in an open complex |
| Q37828367 | Evolution of multisubunit RNA polymerases in the three domains of life. |
| Q37632805 | Forks, pincers, and triggers: the tools for nucleotide incorporation and translocation in multi-subunit RNA polymerases |
| Q36226165 | Functional dissection of the catalytic mechanism of mammalian RNA polymerase II. |
| Q28493091 | Gene-specific regulation by a transcript cleavage factor: facilitating promoter escape |
| Q37308612 | Genetic assays to define and characterize protein-protein interactions involved in gene regulation |
| Q27935493 | Genome-wide location analysis reveals a role of TFIIS in RNA polymerase III transcription |
| Q98566333 | Grad-seq shines light on unrecognized RNA and protein complexes in the model bacterium Escherichia coli |
| Q36206756 | High-Resolution Phenotypic Landscape of the RNA Polymerase II Trigger Loop. |
| Q41892615 | Identification of genes potentially involved in solute stress response in Sphingomonas wittichii RW1 by transposon mutant recovery |
| Q42599368 | Inhibition of Mycobacterium tuberculosis RNA polymerase by binding of a Gre factor homolog to the secondary channel. |
| Q42145561 | Initial transcribed sequence mutations specifically affect promoter escape properties |
| Q37272203 | Insights into the mechanism of initial transcription in Escherichia coli RNA polymerase |
| Q40163605 | Mapping and phenotypic analysis of spontaneous isatin-beta-thiosemicarbazone resistant mutants of vaccinia virus |
| Q47311056 | Mfd Dynamically Regulates Transcription via a Release and Catch-Up Mechanism |
| Q56899639 | Modern mRNA proofreading and repair: clues that the last universal common ancestor possessed an RNA genome? |
| Q33618241 | Molecular evolution of multisubunit RNA polymerases: structural analysis |
| Q41851810 | Molecular genetic and structural modeling studies of Staphylococcus aureus RNA polymerase and the fitness of rifampin resistance genotypes in relation to clinical prevalence |
| Q100395110 | Mutational analysis of Escherichia coli GreA protein reveals new functional activity independent of antipause and lethal when overexpressed |
| Q27694652 | Non-canonical DNA transcription enzymes and the conservation of two-barrel RNA polymerases |
| Q37161590 | Probing the structure of Nun transcription arrest factor bound to RNA polymerase. |
| Q36066229 | RNA 3'-end mismatch excision by the severe acute respiratory syndrome coronavirus nonstructural protein nsp10/nsp14 exoribonuclease complex |
| Q27933951 | RNA polymerase II subunit Rpb9 is important for transcriptional fidelity in vivo |
| Q37505069 | RNA polymerase active center: the molecular engine of transcription |
| Q42924286 | RNA polymerase backtracking in gene regulation and genome instability |
| Q33640968 | RNA polymerase elongation factors |
| Q33858878 | Recombination phenotypes of Escherichia coli greA mutants |
| Q38541517 | Regulation of Transcript Elongation |
| Q38293420 | Regulation of the fimB promoter: a case of differential regulation by ppGpp and DksA in vivo. |
| Q34374702 | Regulation through the RNA polymerase secondary channel. Structural and functional variability of the coiled-coil transcription factors |
| Q36307709 | Replication-transcription conflicts in bacteria. |
| Q42150636 | Role of the RNA polymerase trigger loop in catalysis and pausing. |
| Q35783077 | Role of the coiled-coil tip of Escherichia coli DksA in promoter control |
| Q42137902 | Solute probes of conformational changes in open complex (RPo) formation by Escherichia coli RNA polymerase at the lambdaPR promoter: evidence for unmasking of the active site in the isomerization step and for large-scale coupled folding in the subse |
| Q27644445 | Structural Basis for Converting a General Transcription Factor into an Operon-Specific Virulence Regulator |
| Q98388186 | Structural Basis for Helicase-Polymerase Coupling in the SARS-CoV-2 Replication-Transcription Complex |
| Q36982601 | Structural analysis of protein-RNA interactions with mass spectrometry |
| Q97531111 | Structural basis for helicase-polymerase coupling in the SARS-CoV-2 replication-transcription complex |
| Q27664035 | Structural basis for the bacterial transcription-repair coupling factor/RNA polymerase interaction |
| Q24678740 | Structural basis for transcription inhibition by tagetitoxin |
| Q41598589 | Structural basis of transcription arrest by coliphage HK022 Nun in an Escherichia coli RNA polymerase elongation complex. |
| Q34366785 | Structural basis of transcription: nucleotide selection by rotation in the RNA polymerase II active center |
| Q36416676 | Structural perspective on mutations affecting the function of multisubunit RNA polymerases |
| Q51107154 | Structure and Function of RNA Polymerases and the Transcription Machineries |
| Q35669878 | Structure and function of RNA polymerase II. |
| Q35758805 | Structure and mechanism of the RNA polymerase II transcription machinery |
| Q38313201 | Subcellular partitioning of transcription factors in Bacillus subtilis |
| Q37234957 | Super DksAs: substitutions in DksA enhancing its effects on transcription initiation |
| Q28201160 | TFIIS and GreB: two like-minded transcription elongation factors with sticky fingers |
| Q39752583 | The adenovirus priming protein pTP contributes to the kinetics of initiation of DNA replication |
| Q27648719 | The carboxy-terminal coiled-coil of the RNA polymerase β′-subunit is the main binding site for Gre factors |
| Q24801059 | The highly conserved glutamic acid 791 of Rpb2 is involved in the binding of NTP and Mg(B) in the active center of human RNA polymerase II. |
| Q24814771 | The involvement of the aspartate triad of the active center in all catalytic activities of multisubunit RNA polymerase |
| Q42854209 | The replication-transcription conflict |
| Q47160487 | The transcript cleavage factor paralogue TFS4 is a potent RNA polymerase inhibitor. |
| Q36043488 | Thinking quantitatively about transcriptional regulation. |
| Q27652654 | Three-Dimensional Reconstruction of Tarantula Myosin Filaments Suggests How Phosphorylation May Regulate Myosin Activity |
| Q38708051 | TraR directly regulates transcription initiation by mimicking the combined effects of the global regulators DksA and ppGpp |
| Q28474472 | TraR, a homolog of a RNAP secondary channel interactor, modulates transcription |
| Q40323878 | Transcript cleavage factors GreA and GreB act as transient catalytic components of RNA polymerase |
| Q41902114 | Transcription factor GreA contributes to resolving promoter-proximal pausing of RNA polymerase in Bacillus subtilis cells |
| Q34308284 | Transcription termination by the eukaryotic RNA polymerase III. |
| Q92254240 | Transcription-mediated replication hindrance: a major driver of genome instability |
| Q28539855 | Wolbachia transcription elongation factor "Wol GreA" interacts with α2ββ'σ subunits of RNA polymerase through its dimeric C-terminal domain |
| Q34619759 | pH-dependent conformational switch activates the inhibitor of transcription elongation. |
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