| scholarly article | Q13442814 |
| P2093 | author name string | Christophe Herman | |
| Jennifer A Halliday | |||
| Jeong-Hyun Lee | |||
| Richard L Gourse | |||
| Wilma Ross | |||
| Christopher W Lennon | |||
| Matthew D Blankschien | |||
| Elicia D Grace | |||
| P2860 | cites work | CoSMoS: Conserved Sequence Motif Search in the proteome | Q25255630 |
| Crystal Structure of Escherichia coli Rnk, a New RNA Polymerase-Interacting Protein | Q27651883 | ||
| Crystal structure of the GreA transcript cleavage factor from Escherichia coli | Q27730368 | ||
| The global, ppGpp-mediated stringent response to amino acid starvation in Escherichia coli | Q28277451 | ||
| (p)ppGpp: still magical? | Q28278758 | ||
| TraR, a homolog of a RNAP secondary channel interactor, modulates transcription | Q28474472 | ||
| Mechanism of regulation of transcription initiation by ppGpp. I. Effects of ppGpp on transcription initiation in vivo and in vitro | Q31852675 | ||
| Mechanism of regulation of transcription initiation by ppGpp. II. Models for positive control based on properties of RNAP mutants and competition for RNAP. | Q31852702 | ||
| DksA potentiates direct activation of amino acid promoters by ppGpp | Q33841173 | ||
| Structural basis for transcription regulation by alarmone ppGpp. | Q34316432 | ||
| Intrinsic transcript cleavage activity of RNA polymerase | Q34348611 | ||
| ppGpp: a global regulator in Escherichia coli. | Q34415352 | ||
| Backtracking by single RNA polymerase molecules observed at near-base-pair resolution | Q34698969 | ||
| Effects of DksA, GreA, and GreB on transcription initiation: insights into the mechanisms of factors that bind in the secondary channel of RNA polymerase | Q35729042 | ||
| The rpoB mutants destabilizing initiation complexes at stringently controlled promoters behave like "stringent" RNA polymerases in Escherichia coli | Q35974407 | ||
| Bacterial transcription elongation factors: new insights into molecular mechanism of action | Q36048717 | ||
| New horizons for (p)ppGpp in bacterial and plant physiology. | Q36339121 | ||
| Transcription profiling of the stringent response in Escherichia coli | Q36421860 | ||
| Still looking for the magic spot: the crystallographically defined binding site for ppGpp on RNA polymerase is unlikely to be responsible for rRNA transcription regulation | Q36565042 | ||
| Advances in bacterial promoter recognition and its control by factors that do not bind DNA. | Q36980036 | ||
| Allosteric control of Escherichia coli rRNA promoter complexes by DksA. | Q37111105 | ||
| Regulation of the fimB promoter: a case of differential regulation by ppGpp and DksA in vivo. | Q38293420 | ||
| Modulation of DNA repair by mutations flanking the DNA channel through RNA polymerase | Q39693158 | ||
| Induction of expression of hfq by DksA is essential for Shigella flexneri virulence | Q40223748 | ||
| Structure and function of the transcription elongation factor GreB bound to bacterial RNA polymerase | Q41629112 | ||
| Identical, independent, and opposing roles of ppGpp and DksA in Escherichia coli | Q41790469 | ||
| Mapping of catalytic residues in the RNA polymerase active center | Q42631731 | ||
| Procedure for the rapid, large-scale purification of Escherichia coli DNA-dependent RNA polymerase involving polymin P precipitation and DNA-cellulose chromatography | Q43853213 | ||
| Control of rRNA expression by small molecules is dynamic and nonredundant | Q44530417 | ||
| Isolation of RNA polymerase suppressors of a (p)ppGpp deficiency | Q44720107 | ||
| ppGpp and DksA likely regulate the activity of the extracytoplasmic stress factor sigmaE in Escherichia coli by both direct and indirect mechanisms. | Q46845845 | ||
| RNA polymerase mutants that destabilize RNA polymerase-promoter complexes alter NTP-sensing by rrn P1 promoters | Q47923669 | ||
| Tightly regulated tac promoter vectors useful for the expression of unfused and fused proteins in Escherichia coli | Q48314806 | ||
| ppGpp with DksA controls gene expression in the locus of enterocyte effacement (LEE) pathogenicity island of enterohaemorrhagic Escherichia coli through activation of two virulence regulatory genes. | Q53613130 | ||
| Properties of RNA polymerase bypass mutants: implications for the role of ppGpp and its co-factor DksA in controlling transcription dependent on sigma54. | Q54442568 | ||
| The guanosine tetraphosphate (ppGpp) alarmone, DksA and promoter affinity for RNA polymerase in regulation of sigma-dependent transcription. | Q54466501 | ||
| Antagonistic regulation of Escherichia coli ribosomal RNA rrnB P1 promoter activity by GreA and DksA. | Q54467519 | ||
| Regulation through the Secondary Channel—Structural Framework for ppGpp-DksA Synergism during Transcription | Q57895265 | ||
| Residual guanosine 3',5'-bispyrophosphate synthetic activity of relA null mutants can be eliminated by spoT null mutations | Q70119536 | ||
| Multiple RNA polymerase conformations and GreA: control of the fidelity of transcription | Q72593156 | ||
| Promoter recognition and discrimination by EsigmaS RNA polymerase | Q77333834 | ||
| DksA: a critical component of the transcription initiation machinery that potentiates the regulation of rRNA promoters by ppGpp and the initiating NTP | Q80417641 | ||
| P433 | issue | 12 | |
| P407 | language of work or name | English | Q1860 |
| P1104 | number of pages | 12 | |
| P304 | page(s) | 1720-1731 | |
| P577 | publication date | 2009-05-07 | |
| P1433 | published in | The EMBO Journal | Q1278554 |
| P1476 | title | Super DksAs: substitutions in DksA enhancing its effects on transcription initiation | |
| P478 | volume | 28 |
| Q39254510 | A Rhodobacter sphaeroides protein mechanistically similar to Escherichia coli DksA regulates photosynthetic growth |
| Q42859195 | A hyper-mutant of the unusual sigma70-Pr promoter bypasses synergistic ppGpp/DksA co-stimulation |
| Q33924072 | An insertion in the catalytic trigger loop gates the secondary channel of RNA polymerase |
| Q36631410 | Bacterial Transcription as a Target for Antibacterial Drug Development. |
| Q43149169 | Bacterial global regulators DksA/ppGpp increase fidelity of transcription |
| Q42573633 | Characterization of a novel RNA polymerase mutant that alters DksA activity |
| Q36464979 | Direct interactions between the coiled-coil tip of DksA and the trigger loop of RNA polymerase mediate transcriptional regulation |
| Q46276966 | DksA and ppGpp Regulate the σS Stress Response by Activating Promoters for the Small RNA DsrA and the Anti-Adapter Protein IraP. |
| Q36337732 | DksA involvement in transcription fidelity buffers stochastic epigenetic change |
| Q36394340 | DksA regulates RNA polymerase in Escherichia coli through a network of interactions in the secondary channel that includes Sequence Insertion 1 |
| Q37629025 | Elongation by RNA polymerase: a race through roadblocks |
| Q37333305 | Escherichia coli DksA binds to Free RNA polymerase with higher affinity than to RNA polymerase in an open complex |
| Q36340118 | Growth rate regulation in Escherichia coli |
| Q47442944 | Interplay between σ region 3.2 and secondary channel factors during promoter escape by bacterial RNA polymerase |
| Q100395110 | Mutational analysis of Escherichia coli GreA protein reveals new functional activity independent of antipause and lethal when overexpressed |
| Q33858878 | Recombination phenotypes of Escherichia coli greA mutants |
| Q35783077 | Role of the coiled-coil tip of Escherichia coli DksA in promoter control |
| Q34148377 | Signal sensory systems that impact σ⁵⁴ -dependent transcription. |
| Q37473055 | The dual role of DksA protein in the regulation of Escherichia coli pArgX promoter. |
| Q42550654 | The transcription factor DksA prevents conflicts between DNA replication and transcription machinery |
| Q38708051 | TraR directly regulates transcription initiation by mimicking the combined effects of the global regulators DksA and ppGpp |
| Q42637913 | Transcription from bacteriophage lambda pR promoter is regulated independently and antagonistically by DksA and ppGpp |
| Q35906066 | Transcription initiation factor DksA has diverse effects on RNA chain elongation |
| Q64915092 | Transcriptional Responses to ppGpp and DksA. |
| Q35584326 | pH dependence of the stress regulator DksA |
| Q42578226 | ppGpp Binding to a Site at the RNAP-DksA Interface Accounts for Its Dramatic Effects on Transcription Initiation during the Stringent Response |
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