| scholarly article | Q13442814 |
| P50 | author | Katarzyna Potrykus | Q74241019 |
| P2093 | author name string | Michael Cashel | |
| Christophe Herman | |||
| Daniel Vinella | |||
| Abha Choudhary | |||
| Elicia Grace | |||
| Matthew D Blankschien | |||
| P2860 | cites work | Regulation of sigma factor competition by the alarmone ppGpp | Q24675316 |
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| DksA affects ppGpp induction of RpoS at a translational level | Q34316573 | ||
| Antibacterial peptide microcin J25 inhibits transcription by binding within and obstructing the RNA polymerase secondary channel | Q34327372 | ||
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| ppGpp: a global regulator in Escherichia coli. | Q34415352 | ||
| Interaction of Ler at the LEE5 (tir) operon of enteropathogenic Escherichia coli | Q34521490 | ||
| Of what use is sex to bacteria? | Q34562948 | ||
| Backtracking by single RNA polymerase molecules observed at near-base-pair resolution | Q34698969 | ||
| Promoter selectivity of Escherichia coli RNA polymerase sigmaF holoenzyme involved in transcription of flagellar and chemotaxis genes | Q35625422 | ||
| Effects of DksA, GreA, and GreB on transcription initiation: insights into the mechanisms of factors that bind in the secondary channel of RNA polymerase | Q35729042 | ||
| Regulation of RNA polymerase through the secondary channel. | Q35856127 | ||
| Construction and analysis of F plasmid traR, trbJ, and trbH mutants | Q35912530 | ||
| rRNA transcription in Escherichia coli | Q35965873 | ||
| Escherichia coli ribosomal RNA transcription: regulatory roles for ppGpp, NTPs, architectural proteins and a polymerase-binding protein | Q36027342 | ||
| Molecular analysis of the F plasmid traVR region: traV encodes a lipoprotein | Q36108933 | ||
| Identification and characterization of a new Escherichia coli gene that is a dosage-dependent suppressor of a dnaK deletion mutation | Q36160158 | ||
| Analysis of transfer genes and gene products within the traB-traC region of the Escherichia coli fertility factor, F. | Q36264263 | ||
| Still looking for the magic spot: the crystallographically defined binding site for ppGpp on RNA polymerase is unlikely to be responsible for rRNA transcription regulation | Q36565042 | ||
| Regulation of the fimB promoter: a case of differential regulation by ppGpp and DksA in vivo. | Q38293420 | ||
| Transposition and fusion of the lac genes to selected promoters in Escherichia coli using bacteriophage lambda and Mu | Q39605636 | ||
| Repressor gene finO in plasmids R100 and F: constitutive transfer of plasmid F is caused by insertion of IS3 into F finO. | Q39955717 | ||
| ppGpp-dependent stationary phase induction of genes on Salmonella pathogenicity island 1. | Q40552048 | ||
| Analysis of the sequence and gene products of the transfer region of the F sex factor | Q40625554 | ||
| Hfq is a regulator of F-plasmid TraJ and TraM synthesis in Escherichia coli. | Q40724195 | ||
| Guanosine tetraphosphate (ppGpp) dependence of the growth rate control of rrnB P1 promoter activity in Escherichia coli | Q41194353 | ||
| Structure and function of the transcription elongation factor GreB bound to bacterial RNA polymerase | Q41629112 | ||
| Identical, independent, and opposing roles of ppGpp and DksA in Escherichia coli | Q41790469 | ||
| Characterization of the opposing roles of H-NS and TraJ in transcriptional regulation of the F-plasmid tra operon | Q42650546 | ||
| The mating pair stabilization protein, TraN, of the F plasmid is an outer-membrane protein with two regions that are important for its function in conjugation | Q46792462 | ||
| ppGpp and DksA likely regulate the activity of the extracytoplasmic stress factor sigmaE in Escherichia coli by both direct and indirect mechanisms. | Q46845845 | ||
| Molecular mechanism of transcription inhibition by peptide antibiotic Microcin J25. | Q47333957 | ||
| Cloning, sequencing, and characterization of multicopy suppressors of a mukB mutation in Escherichia coli. | Q48081315 | ||
| The bacterial signal molecule, ppGpp, mediates the environmental regulation of both the invasion and intracellular virulence gene programs of Salmonella | Q50077977 | ||
| ppGpp with DksA controls gene expression in the locus of enterocyte effacement (LEE) pathogenicity island of enterohaemorrhagic Escherichia coli through activation of two virulence regulatory genes. | Q53613130 | ||
| RecN protein and transcription factor DksA combine to promote faithful recombinational repair of DNA double-strand breaks. | Q53671523 | ||
| Antagonistic regulation of Escherichia coli ribosomal RNA rrnB P1 promoter activity by GreA and DksA. | Q54467519 | ||
| GreA-induced transcript cleavage in transcription complexes containing Escherichia coli RNA polymerase is controlled by multiple factors, including nascent transcript location and structure. | Q54627587 | ||
| Regulation through the Secondary Channel—Structural Framework for ppGpp-DksA Synergism during Transcription | Q57895265 | ||
| Residual guanosine 3',5'-bispyrophosphate synthetic activity of relA null mutants can be eliminated by spoT null mutations | Q70119536 | ||
| Guanosine polyphosphate production of Escherichia coli stringent and relaxed strains in the stationary phase of growth | Q70164611 | ||
| Multiple RNA polymerase conformations and GreA: control of the fidelity of transcription | Q72593156 | ||
| DksA: a critical component of the transcription initiation machinery that potentiates the regulation of rRNA promoters by ppGpp and the initiating NTP | Q80417641 | ||
| Crystal structure of Thermus aquaticus Gfh1, a Gre-factor paralog that inhibits rather than stimulates transcript cleavage | Q81595789 | ||
| P275 | copyright license | Creative Commons CC0 License | Q6938433 |
| P6216 | copyright status | copyrighted, dedicated to the public domain by copyright holder | Q88088423 |
| P433 | issue | 1 | |
| P407 | language of work or name | English | Q1860 |
| P304 | page(s) | e1000345 | |
| P577 | publication date | 2009-01-16 | |
| P1433 | published in | PLOS Genetics | Q1893441 |
| P1476 | title | TraR, a homolog of a RNAP secondary channel interactor, modulates transcription | |
| P478 | volume | 5 |
| Q39254510 | A Rhodobacter sphaeroides protein mechanistically similar to Escherichia coli DksA regulates photosynthetic growth |
| Q42151071 | Activation of the σE-dependent stress pathway by conjugative TraR may anticipate conjugational stress. |
| Q51747914 | Allosteric Effector ppGpp Potentiates the Inhibition of Transcript Initiation by DksA. |
| Q33924072 | An insertion in the catalytic trigger loop gates the secondary channel of RNA polymerase |
| Q34763754 | Analysis of two domains with novel RNA-processing activities throws light on the complex evolution of ribosomal RNA biogenesis |
| Q42573633 | Characterization of a novel RNA polymerase mutant that alters DksA activity |
| Q35835079 | Co-ordinated regulation of the extracytoplasmic stress factor, sigmaE, with other Escherichia coli sigma factors by (p)ppGpp and DksA may be achieved by specific regulation of individual holoenzymes |
| Q91522572 | Conditional down-regulation of GreA impacts expression of rRNA and transcription factors, affecting Mycobacterium smegmatis survival |
| Q42917195 | Control of transcription elongation by GreA determines rate of gene expression in Streptococcus pneumoniae |
| Q46276966 | DksA and ppGpp Regulate the σS Stress Response by Activating Promoters for the Small RNA DsrA and the Anti-Adapter Protein IraP. |
| Q36337732 | DksA involvement in transcription fidelity buffers stochastic epigenetic change |
| Q35668135 | Effects on growth by changes of the balance between GreA, GreB, and DksA suggest mutual competition and functional redundancy in Escherichia coli |
| Q37629025 | Elongation by RNA polymerase: a race through roadblocks |
| Q35673712 | Gene order and chromosome dynamics coordinate spatiotemporal gene expression during the bacterial growth cycle |
| Q24630113 | Imprecise transcription termination within Escherichia coli greA leader gives rise to an array of short transcripts, GraL |
| Q42599368 | Inhibition of Mycobacterium tuberculosis RNA polymerase by binding of a Gre factor homolog to the secondary channel. |
| Q39574927 | Multiple active centers of multi-subunit RNA polymerases |
| Q100395110 | Mutational analysis of Escherichia coli GreA protein reveals new functional activity independent of antipause and lethal when overexpressed |
| Q26822940 | New Insights into the Functions of Transcription Factors that Bind the RNA Polymerase Secondary Channel |
| Q93376318 | Puzzling conformational changes affecting proteins binding to the RNA polymerase |
| Q35783077 | Role of the coiled-coil tip of Escherichia coli DksA in promoter control |
| Q90239204 | Stepwise Promoter Melting by Bacterial RNA Polymerase |
| Q37234957 | Super DksAs: substitutions in DksA enhancing its effects on transcription initiation |
| Q42550654 | The transcription factor DksA prevents conflicts between DNA replication and transcription machinery |
| Q38708051 | TraR directly regulates transcription initiation by mimicking the combined effects of the global regulators DksA and ppGpp |
| Q64915092 | Transcriptional Responses to ppGpp and DksA. |
| Q33909091 | ppGpp conjures bacterial virulence |
| Q36015916 | ppGpp is the major source of growth rate control in E. coli |
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