| scholarly article | Q13442814 |
| review article | Q7318358 |
| P50 | author | Stephan Hamperl | Q56837306 |
| P2093 | author name string | Karlene A Cimprich | |
| P2860 | cites work | A Mechanism for Somatic Brain Mosaicism | Q48910760 |
| BRCA2 prevents R-loop accumulation and associates with TREX-2 mRNA export factor PCID2. | Q50455260 | ||
| Replication stress checkpoint signaling controls tRNA gene transcription. | Q53311771 | ||
| Direct restart of a replication fork stalled by a head-on RNA polymerase | Q82683813 | ||
| Out of balance: R-loops in human disease | Q21144865 | ||
| Pervasive transcription of the human genome produces thousands of previously unidentified long intergenic noncoding RNAs | Q21144890 | ||
| Human senataxin resolves RNA/DNA hybrids formed at transcriptional pause sites to promote Xrn2-dependent termination | Q24307617 | ||
| PrimPol, an archaic primase/polymerase operating in human cells | Q24339480 | ||
| DNA/RNA helicase gene mutations in a form of juvenile amyotrophic lateral sclerosis (ALS4) | Q24533845 | ||
| Transcription termination maintains chromosome integrity | Q24598056 | ||
| Breaking bad: R-loops and genome integrity | Q26858910 | ||
| Structural basis of RNA polymerase II backtracking, arrest and reactivation | Q27666785 | ||
| The DNA Damage Response: Making It Safe to Play with Knives | Q27861055 | ||
| Pif1 family helicases suppress genome instability at G-quadruplex motifs | Q27932667 | ||
| Senataxin associates with replication forks to protect fork integrity across RNA-polymerase-II-transcribed genes | Q27935087 | ||
| Genome-wide distribution of yeast RNA polymerase II and its control by Sen1 helicase | Q27938434 | ||
| Coordinated control of replication and transcription by a SAPK protects genomic integrity. | Q27939721 | ||
| Transcription-associated R-loop formation across the human FMR1 CGG-repeat region | Q28537978 | ||
| ATR Regulates Fragile Site Stability | Q29303576 | ||
| ATR: an essential regulator of genome integrity | Q29547883 | ||
| Consequences of replication fork movement through transcription units in vivo | Q30311901 | ||
| Senataxin, defective in the neurodegenerative disorder ataxia with oculomotor apraxia 2, lies at the interface of transcription and the DNA damage response | Q30532840 | ||
| Ultraviolet light-induced apoptosis is associated with S-phase in primary human fibroblasts. | Q31126149 | ||
| Co-orientation of replication and transcription preserves genome integrity | Q33525506 | ||
| C9orf72 nucleotide repeat structures initiate molecular cascades of disease. | Q33715387 | ||
| DNA replication initiation patterns and spatial dynamics of the human ribosomal RNA gene loci | Q33978073 | ||
| Topoisomerase I suppresses genomic instability by preventing interference between replication and transcription | Q34031653 | ||
| Yeast Sen1 helicase protects the genome from transcription-associated instability. | Q34157855 | ||
| Collisions between replication and transcription complexes cause common fragile site instability at the longest human genes | Q34242723 | ||
| RNase H and multiple RNA biogenesis factors cooperate to prevent RNA:DNA hybrids from generating genome instability | Q34242729 | ||
| Senataxin, the ortholog of a yeast RNA helicase, is mutant in ataxia-ocular apraxia 2. | Q34295566 | ||
| R loops are linked to histone H3 S10 phosphorylation and chromatin condensation | Q34383922 | ||
| Genome-wide profiling of yeast DNA:RNA hybrid prone sites with DRIP-chip | Q34415765 | ||
| Dicer promotes transcription termination at sites of replication stress to maintain genome stability | Q34567609 | ||
| Transcription regulatory elements are punctuation marks for DNA replication | Q34624448 | ||
| Transcription-coupled nucleotide excision repair factors promote R-loop-induced genome instability | Q34747176 | ||
| The conserved C-terminus of the PcrA/UvrD helicase interacts directly with RNA polymerase | Q35023532 | ||
| Dynamic loading and redistribution of the Mcm2-7 helicase complex through the cell cycle | Q35090675 | ||
| BRCA1 recruitment to transcriptional pause sites is required for R-loop-driven DNA damage repair | Q35153726 | ||
| R-loops associated with triplet repeat expansions promote gene silencing in Friedreich ataxia and fragile X syndrome. | Q35160930 | ||
| Zygotic genome activation triggers the DNA replication checkpoint at the midblastula transition | Q35177439 | ||
| Phosphoproteomics reveals distinct modes of Mec1/ATR signaling during DNA replication | Q35205336 | ||
| R-loop-mediated genomic instability is caused by impairment of replication fork progression | Q35393287 | ||
| Role for RNA:DNA hybrids in origin-independent replication priming in a eukaryotic system. | Q35590194 | ||
| The B. subtilis Accessory Helicase PcrA Facilitates DNA Replication through Transcription Units | Q35662402 | ||
| R-loop-mediated genome instability in mRNA cleavage and polyadenylation mutants | Q35740611 | ||
| The Fanconi Anemia Pathway Protects Genome Integrity from R-loops | Q35846161 | ||
| DNA replication through hard-to-replicate sites, including both highly transcribed RNA Pol II and Pol III genes, requires the S. pombe Pfh1 helicase. | Q35860068 | ||
| The Fanconi Anemia Pathway Maintains Genome Stability by Coordinating Replication and Transcription | Q36278226 | ||
| Replication-transcription conflicts in bacteria. | Q36307709 | ||
| Post-licensing Specification of Eukaryotic Replication Origins by Facilitated Mcm2-7 Sliding along DNA. | Q36376055 | ||
| Replication landscape of the human genome | Q36511235 | ||
| Mec1, INO80, and the PAF1 complex cooperate to limit transcription replication conflicts through RNAPII removal during replication stress | Q36549522 | ||
| Long Neural Genes Harbor Recurrent DNA Break Clusters in Neural Stem/Progenitor Cells. | Q36577607 | ||
| Quantitative, genome-wide analysis of eukaryotic replication initiation and termination | Q36771862 | ||
| Identification of early replicating fragile sites that contribute to genome instability | Q36776345 | ||
| Replication fork barriers: pausing for a break or stalling for time? | Q36777307 | ||
| Organization of replication of ribosomal DNA in Saccharomyces cerevisiae | Q36849425 | ||
| Prevalent, Dynamic, and Conserved R-Loop Structures Associate with Specific Epigenomic Signatures in Mammals | Q37113864 | ||
| BRCA1 and BRCA2: different roles in a common pathway of genome protection | Q37149848 | ||
| Proteasome-mediated processing of Def1, a critical step in the cellular response to transcription stress | Q37187541 | ||
| Co-transcriptional R-loops are the main cause of estrogen-induced DNA damage | Q37270352 | ||
| Bacterial transcription terminators: the RNA 3'-end chronicles | Q37857944 | ||
| Preventing replication stress to maintain genome stability: resolving conflicts between replication and transcription | Q37998652 | ||
| Transcription-coupled DNA repair in prokaryotes | Q38022931 | ||
| Transcription-replication encounters, consequences and genomic instability | Q38095707 | ||
| Updating the mechanisms of common fragile site instability: how to reconcile the different views? | Q38253494 | ||
| Genome-wide function of THO/TREX in active genes prevents R-loop-dependent replication obstacles | Q38254699 | ||
| Linking RNA polymerase backtracking to genome instability in E. coli | Q38257014 | ||
| The replication checkpoint protects fork stability by releasing transcribed genes from nuclear pores. | Q38257019 | ||
| Co-directional replication-transcription conflicts lead to replication restart | Q38337096 | ||
| Rep provides a second motor at the replisome to promote duplication of protein-bound DNA. | Q38490790 | ||
| R loops: new modulators of genome dynamics and function | Q38586926 | ||
| R-loops in bacterial transcription: their causes and consequences | Q38636495 | ||
| R-loops induce repressive chromatin marks over mammalian gene terminators | Q38949719 | ||
| Common fragile site profiling in epithelial and erythroid cells reveals that most recurrent cancer deletions lie in fragile sites hosting large genes. | Q39116279 | ||
| Increased replication initiation and conflicts with transcription underlie Cyclin E-induced replication stress | Q39285948 | ||
| RECQL5 controls transcript elongation and suppresses genome instability associated with transcription stress | Q39911515 | ||
| Transcription-associated recombination is dependent on replication in Mammalian cells | Q40060634 | ||
| GINS motion reveals replication fork progression is remarkably uniform throughout the yeast genome. | Q40150670 | ||
| Mechanisms of transcription-replication collisions in bacteria | Q40890748 | ||
| Segregation of transcription and replication sites into higher order domains | Q41010873 | ||
| Exit from dormancy provokes DNA-damage-induced attrition in haematopoietic stem cells. | Q41468517 | ||
| Impairment of replication fork progression mediates RNA polII transcription-associated recombination | Q41512551 | ||
| Structure and function of the transcription elongation factor GreB bound to bacterial RNA polymerase | Q41629112 | ||
| Temporal separation of replication and transcription during S-phase progression | Q41717051 | ||
| Highly transcribed RNA polymerase II genes are impediments to replication fork progression in Saccharomyces cerevisiae | Q41843323 | ||
| Accelerated gene evolution through replication-transcription conflicts | Q41970825 | ||
| The S-phase checkpoint is required to respond to R-loops accumulated in THO mutants | Q42037812 | ||
| The nature of mutations induced by replication–transcription collisions. | Q42097259 | ||
| Cooperation between translating ribosomes and RNA polymerase in transcription elongation | Q42159573 | ||
| UvrD facilitates DNA repair by pulling RNA polymerase backwards | Q42262393 | ||
| The transcription factor DksA prevents conflicts between DNA replication and transcription machinery | Q42550654 | ||
| RNA polymerase backtracking in gene regulation and genome instability | Q42924286 | ||
| Replication fork progression is impaired by transcription in hyperrecombinant yeast cells lacking a functional THO complex | Q42941871 | ||
| Bacterial global regulators DksA/ppGpp increase fidelity of transcription | Q43149169 | ||
| RNA polymerase II contributes to preventing transcription-mediated replication fork stalls | Q43158336 | ||
| The replisome uses mRNA as a primer after colliding with RNA polymerase | Q43225835 | ||
| Genometric analyses of the organization of circular chromosomes: a universal pressure determines the direction of ribosomal RNA genes transcription relative to chromosome replication. | Q43813528 | ||
| Transcriptional fidelity and proofreading by RNA polymerase II. | Q48032922 | ||
| P433 | issue | 6 | |
| P407 | language of work or name | English | Q1860 |
| P921 | main subject | conflict resolution | Q1194317 |
| P304 | page(s) | 1455-1467 | |
| P577 | publication date | 2016-12-01 | |
| P1433 | published in | Cell | Q655814 |
| P1476 | title | Conflict Resolution in the Genome: How Transcription and Replication Make It Work | |
| P478 | volume | 167 |
| Q58553479 | A journey with common fragile sites: from S-phase to telophase |
| Q47369723 | A mitosis-specific and R loop-driven ATR pathway promotes faithful chromosome segregation. |
| Q91710757 | A novel mechanism for the prevention of transcription replication conflicts |
| Q64230082 | ATM pathway activation limits R-loop-associated genomic instability in Werner syndrome cells |
| Q48109551 | An ATR-dependent function for the Ddx19 RNA helicase in nuclear R-loop metabolism. |
| Q94466519 | An advanced cell cycle tag toolbox reveals principles underlying temporal control of structure-selective nucleases |
| Q89766740 | Analytical distributions for detailed models of stochastic gene expression in eukaryotic cells |
| Q47186808 | Around and beyond 53BP1 Nuclear Bodies |
| Q47101236 | Association with Aurora-A Controls N-MYC-Dependent Promoter Escape and Pause Release of RNA Polymerase II during the Cell Cycle. |
| Q98471230 | BRD4 prevents the accumulation of R-loops and protects against transcription-replication collision events and DNA damage |
| Q92715820 | Beyond the Trinity of ATM, ATR, and DNA-PK: Multiple Kinases Shape the DNA Damage Response in Concert With RNA Metabolism |
| Q102152417 | Causes and consequences of RNA polymerase II stalling during transcript elongation |
| Q89637752 | Cell fitness screens reveal a conflict between LINE-1 retrotransposition and DNA replication |
| Q39010240 | Centromere Stability: The Replication Connection |
| Q57046190 | Chromatin conformation and transcriptional activity are permissive regulators of DNA replication initiation in Drosophila |
| Q52717242 | Chromatin conformation regulates the coordination between DNA replication and transcription. |
| Q42263592 | Cytosine deamination and base excision repair cause R-loop-induced CAG repeat fragility and instability in Saccharomyces cerevisiae |
| Q98245637 | DONSON and FANCM associate with different replisomes distinguished by replication timing and chromatin domain |
| Q90036650 | Decoding the chromatin proteome of a single genomic locus by DNA sequencing |
| Q89766597 | Determinants of Replication-Fork Pausing at tRNA Genes in Saccharomyces cerevisiae |
| Q57808238 | Detours to Replication: Functions of Specialized DNA Polymerases during Oncogene-induced Replication Stress |
| Q89880050 | From R-Loops to G-Quadruplexes: Emerging New Threats for the Replication Fork |
| Q58599727 | Gene inversion potentiates bacterial evolvability and virulence |
| Q47148140 | Genome integrity and disease prevention in the nervous system |
| Q89636837 | H3K4 methylation at active genes mitigates transcription-replication conflicts during replication stress |
| Q39107325 | Inhibiting translation elongation can aid genome duplication in Escherichia coli |
| Q64112038 | Just the Two of Us? A Family of Pseudomonas Megaplasmids Offers a Rare Glimpse into the Evolution of Large Mobile Elements |
| Q89477862 | Localized Inhibition of Protein Phosphatase 1 by NUAK1 Promotes Spliceosome Activity and Reveals a MYC-Sensitive Feedback Control of Transcription |
| Q39326104 | Mechanisms of DNA replication termination. |
| Q47334226 | Mechanisms of bacterial DNA replication restart. |
| Q49340904 | Multiple signaling kinases target Mrc1 to prevent genomic instability triggered by transcription-replication conflicts. |
| Q99614810 | Origin of Genome Instability and Determinants of Mutational Landscape in Cancer Cells |
| Q39077274 | RNA Exosome and Non-coding RNA-Coupled Mechanisms in AID-Mediated Genomic Alterations |
| Q41542861 | RNA biology of disease-associated microsatellite repeat expansions |
| Q64389650 | RNase H eliminates R-loops that disrupt DNA replication but is nonessential for efficient DSB repair |
| Q47758933 | RNase H1 Cooperates with DNA Gyrases to Restrict R-Loops and Maintain Genome Integrity in Arabidopsis Chloroplasts |
| Q90100034 | RecQL4 tethering on the pre-replicative complex induces unscheduled origin activation and replication stress in human cells |
| Q89475497 | Regulatory R-loops as facilitators of gene expression and genome stability |
| Q47241703 | Removal of RTF2 from Stalled Replisomes Promotes Maintenance of Genome Integrity. |
| Q99412090 | Replisome bypass of transcription complexes and R-loops |
| Q47428815 | Separase prevents genomic instability by controlling replication fork speed |
| Q64092144 | Synergistic lethality between BRCA1 and H3K9me2 loss reflects satellite derepression |
| Q89767723 | Target gene-independent functions of MYC oncoproteins |
| Q88950020 | The Clash of Macromolecular Titans: Replication-Transcription Conflicts in Bacteria |
| Q90320875 | The Hippo Pathway Prevents YAP/TAZ-Driven Hypertranscription and Controls Neural Progenitor Number |
| Q52532552 | The INO80 remodeller in transcription, replication and repair. |
| Q39400453 | The Role of Replication-Associated Repair Factors on R-Loops |
| Q89866885 | The antitumorigenic roles of BRCA1-BARD1 in DNA repair and replication |
| Q91934929 | The enigmatic role of Mfd in replication-transcription conflicts in bacteria |
| Q90402483 | The role of fork stalling and DNA structures in causing chromosome fragility |
| Q91767936 | Transcription activity contributes to the firing of non-constitutive origins in African trypanosomes helping to maintain robustness in S-phase duration |
| Q64082054 | Transcription is a major driving force for plastid genome instability in Arabidopsis |
| Q47653997 | Transcription pausing: biological significance of thermal fluctuations biased by repetitive genomic sequences. |
| Q53801893 | Transcription-associated events affecting genomic integrity. |
| Q92254240 | Transcription-mediated replication hindrance: a major driver of genome instability |
| Q64230199 | Tyrosine kinase c-Abl couples RNA polymerase II transcription to DNA double-strand breaks |
| Q50453069 | Unearthing worm replication origins |
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