Intragenomic heterogeneity between multiple 16S ribosomal RNA operons in sequenced bacterial genomes

scientific article (publication date: 7 November 2003)

Intragenomic heterogeneity between multiple 16S ribosomal RNA operons in sequenced bacterial genomes is …
instance of (P31):
scholarly articleQ13442814

External links are
P356DOI10.1016/S0378-1097(03)00717-1
P8608Fatcat IDrelease_ixou7qcq3ffyfajne56f6paivy
P3181OpenCitations bibliographic resource ID337279
P698PubMed publication ID14612235
P5875ResearchGate publication ID5332959

P50authorPeter VandammeQ21337596
Tom CoenyeQ37829383
P2860cites workMfold web server for nucleic acid folding and hybridization predictionQ24498105
Gapped BLAST and PSI-BLAST: a new generation of protein database search programsQ24545170
Distinct types of rRNA operons exist in the genome of the actinomycete Thermomonospora chromogena and evidence for horizontal transfer of an entire rRNA operonQ24549229
Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structureQ27860806
rRNA operon copy number reflects ecological strategies of bacteriaQ33986862
Bifidobacterial diversity in human feces detected by genus-specific PCR and denaturing gradient gel electrophoresisQ33988756
rrndb: the Ribosomal RNA Operon Copy Number DatabaseQ34314931
Intraspecific variation in small-subunit rRNA sequences in GenBank: why single sequences may not adequately represent prokaryotic taxaQ34374131
A quantitative map of nucleotide substitution rates in bacterial rRNA.Q34397633
The actinomycete Thermobispora bispora contains two distinct types of transcriptionally active 16S rRNA genesQ35623576
Multigene families and the evolution of complexityQ37354159
Distribution of substitution rates and location of insertion sites in the tertiary structure of ribosomal RNA.Q39516352
How close is close: 16S rRNA sequence identity may not be sufficient to guarantee species identityQ43731813
Sequence heterogeneities among 16S ribosomal RNA sequences, and their effect on phylogenetic analyses at the species levelQ48065860
Polymorphism in repeated 16S rRNA genes is a common property of type strains and environmental isolates of the genus VibrioQ48310107
Sequence heterogeneity of the ten rRNA operons in Clostridium perfringensQ48346781
Intra-chromosomal heterogeneity between the four 16S rRNA gene copies in the genus Veillonella: implications for phylogeny and taxonomyQ48723077
Evidence for biased gene conversion in concerted evolution of ribosomal DNA.Q52864071
Taxonomic Note: A Place for DNA-DNA Reassociation and 16S rRNA Sequence Analysis in the Present Species Definition in BacteriologyQ55980601
Bacterial evolutionQ114737614
P433issue1
P407language of work or nameEnglishQ1860
P921main subjectheterogeneityQ928498
P304page(s)45-9
P577publication date2003-11-07
P1433published inFEMS Microbiology LettersQ15756366
P1476titleIntragenomic heterogeneity between multiple 16S ribosomal RNA operons in sequenced bacterial genomes
P478volume228

Reverse relations

cites work (P2860)
Q4199499316S rRNA gene sequencing on a benchtop sequencer: accuracy for identification of clinically important bacteria
Q35844453A systematic approach for discovering novel, clinically relevant bacteria
Q92579040Absolute quantitation of microbes using 16S rRNA gene metabarcoding: A rapid normalization of relative abundances by quantitative PCR targeting a 16S rRNA gene spike-in standard
Q44846771An unusual strain of Haemophilus parasuis that fails to react in a species-specific polymerase chain reaction assay
Q42139175Analysis of mixed sequencing chromatograms and its application in direct 16S rRNA gene sequencing of polymicrobial samples
Q35221009Application of SmartGene IDNS software to partial 16S rRNA gene sequences for a diverse group of bacteria in a clinical laboratory
Q42094019Application of denaturing high-performance liquid chromatography in microbial ecology: fermentor sludge, compost, and soil community profiling
Q28757816Assembly of viral metagenomes from yellowstone hot springs
Q34571191Blood microbiota dysbiosis is associated with the onset of cardiovascular events in a large general population: the D.E.S.I.R. study
Q36477037Combination of 16S rRNA variable regions provides a detailed analysis of bacterial community dynamics in the lungs of cystic fibrosis patients
Q98163510Completion of draft bacterial genomes by long-read sequencing of synthetic genomic pools
Q33229169Composition of microbial communities in hexachlorocyclohexane (HCH) contaminated soils from Spain revealed with a habitat-specific microarray
Q35993825Culture-Independent Identification of Nontuberculous Mycobacteria in Cystic Fibrosis Respiratory Samples
Q23917463Culture-independent characterization of bacteria and fungi in a poultry bioaerosol using pyrosequencing: a new approach
Q64258930Deletion of rRNA Operons of Strain NGR234 and Impact on Symbiosis With Legumes
Q54652622Design and application of a Staphylococcus-specific single strand conformation polymorphism-PCR analysis to monitor Staphylococcus populations diversity and dynamics during production of raw milk cheese.
Q58780982Design of Primers for Evaluation of Lactic Acid Bacteria Populations in Complex Biological Samples
Q30316421Development and Evaluation of qPCR Assay for Quantitation of Kazachstania slooffiae and Total Yeasts Occurring in the Porcine Gut.
Q92544333Development of a DGGE method to explore Legionella communities
Q57283269Differences in the subgingival microbial population of chronic periodontitis in subjects with and without type 2 diabetes mellitus-a systematic review
Q36958086Divergence among genes encoding the elongation factor Tu of Yersinia Species.
Q43691280Diversities within genotypes, bioactivity and biosynthetic genes of endophytic actinomycetes isolated from three pharmaceutical plants.
Q33946493Diversity of 16S rRNA genes within individual prokaryotic genomes.
Q33438866Diversity of 23S rRNA genes within individual prokaryotic genomes
Q28727928Diversity of 5S rRNA genes within individual prokaryotic genomes
Q42639691Diversity of cutaneous bacteria with antifungal activity isolated from female four-toed salamanders
Q41621780Draft Genome Sequence of Chromate-Resistant and Biofilm-Producing Strain Pseudomonas alcaliphila 34.
Q37790499Electrochemical DNA hybridization sensors applied to real and complex biological samples
Q34048396Evolutionary and diagnostic implications of intragenomic heterogeneity in the 16S rRNA gene in Aeromonas strains
Q31009686First case of septicemia due to a strain belonging to enteric group 58 (Enterobacteriaceae) and its designation as Averyella dalhousiensis gen. nov., sp. nov., based on analysis of strains from 20 additional cases
Q39572485Flow Cytometric and 16S Sequencing Methodologies for Monitoring the Physiological Status of the Microbiome in Powdered Infant Formula Production
Q28709588Gene copy number variation and its significance in cyanobacterial phylogeny
Q34686661Gut microbiota and obesity: lessons from the microbiome
Q36324135Improvement of identification methods for honeybee specific Lactic Acid Bacteria; future approaches.
Q50712196In Vivo PCR-DGGE analysis of Lactobacillus plantarum and Oenococcus oeni populations in red wine.
Q64246654Information about variations in multiple copies of bacterial 16S rRNA genes may aid in species identification
Q35748930Interaction of Vibrio spp. with the Inner Surface of the Digestive Tract of Penaeus monodon
Q35714248Interrelatedness between dysbiosis in the gut microbiota due to immunodeficiency and disease penetrance of colitis
Q33306509Intragenomic 16S rDNA divergence in Haloarcula marismortui is an adaptation to different temperatures
Q43022464Intragenomic diversity of the V1 regions of 16S rRNA genes in high-alkaline protease-producing Bacillus clausii spp.
Q43791714Intragenomic heterogeneity in the 16S rRNA genes of Flavobacterium columnare and standard protocol for genomovar assignment.
Q37263616Intragenomic heterogeneity of 16S rRNA genes causes overestimation of prokaryotic diversity
Q42619039Involvement of tissue bacteria in the onset of diabetes in humans: evidence for a concept
Q35749049Microbial Communities Can Be Described by Metabolic Structure: A General Framework and Application to a Seasonally Variable, Depth-Stratified Microbial Community from the Coastal West Antarctic Peninsula.
Q33270633Monitoring bacterial communities in raw milk and cheese by culture-dependent and -independent 16S rRNA gene-based analyses
Q44589089Optimization and application of a reverse transcriptase polymerase chain reaction to determine the bacterial viability in infectious endophthalmitis
Q56334004Perioperative use of cefazolin ameliorates postoperative cognitive dysfunction but induces gut inflammation in mice
Q37054451PhyloToAST: Bioinformatics tools for species-level analysis and visualization of complex microbial datasets
Q35682220Phylogenetic congruence and ecological coherence in terrestrial Thaumarchaeota
Q46896256Polyphasic identification of cyanobacterial isolates from Australia.
Q42633047Population genetic structure of the Staphylococcus intermedius group: insights into agr diversification and the emergence of methicillin-resistant strains
Q40129363Potential for Monitoring Gut Microbiota for Diagnosing Infections and Graft-versus-Host Disease in Cancer and Stem Cell Transplant Patients.
Q33959353Ribosomal RNA diversity predicts genome diversity in gut bacteria and their relatives
Q34432598Ribosomal multi-operon diversity: an original perspective on the genus Aeromonas
Q47614793Screening of bacterial contamination during gelatine production by means of denaturing gradient gel electrophoresis, focussed on Bacillus and related endospore-forming genera
Q57798629Species-level bacterial community profiling of the healthy sinonasal microbiome using Pacific Biosciences sequencing of full-length 16S rRNA genes
Q33909363Streptococcus gallolyticus subspecies pasteurianus (biotype II/2), a newly reported cause of adult meningitis
Q36435022StreptomeDB 2.0--an extended resource of natural products produced by streptomycetes
Q56891626The EBI Metagenomics Archive, Integration and Analysis Resource
Q54311357Use of the rpoB gene as an alternative to the V3 gene for the identification of spoilage and pathogenic bacteria species in milk and milk products.
Q37578780Vibrio diversity and dynamics in the Monterey Bay upwelling region.
Q46460011Widespread Distribution of Dehalococcoides mccartyi in the Houston Ship Channel and Galveston Bay, Texas, Sediments and the Potential for Reductive Dechlorination of PCDD/F in an Estuarine Environment
Q55259617riboSeed: leveraging prokaryotic genomic architecture to assemble across ribosomal regions.

Search more.