RNA interactions in the 5' region of the HIV-1 genome

scientific article (publication date: 13 February 2004)

RNA interactions in the 5' region of the HIV-1 genome is …
instance of (P31):
scholarly articleQ13442814

External links are
P356DOI10.1016/J.JMB.2003.12.010
P3181OpenCitations bibliographic resource ID3582145
P698PubMed publication ID14757051
P5875ResearchGate publication ID8891389

P50authorJan GorodkinQ41050071
Jørgen KjemsQ55277197
P2093author name stringBjarne Knudsen
Ebbe Sloth Andersen
Christian Kroun Damgaard
P433issue2
P407language of work or nameEnglishQ1860
P304page(s)369-379
P577publication date2004-02-01
P1433published inJournal of Molecular BiologyQ925779
P1476titleRNA interactions in the 5' region of the HIV-1 genome
P478volume336

Reverse relations

cites work (P2860)
Q40600848A Phylogenetic Survey on the Structure of the HIV-1 Leader RNA Domain That Encodes the Splice Donor Signal
Q36653089A cis-acting element in retroviral genomic RNA links Gag-Pol ribosomal frameshifting to selective viral RNA encapsidation
Q42151130A domain-based model for predicting large and complex pseudoknotted structures
Q33202244A genomic selection strategy to identify accessible and dimerization blocking targets in the 5'-UTR of HIV-1 RNA
Q39373897A new type of IRES within gag coding region recruits three initiation complexes on HIV-2 genomic RNA
Q36008146A proposal for a new HIV-1 DLS structural model
Q35153487Activity of the human immunodeficiency virus type 1 cell cycle-dependent internal ribosomal entry site is modulated by IRES trans-acting factors
Q35785204An extended stem-loop 1 is necessary for human immunodeficiency virus type 2 replication and affects genomic RNA encapsidation
Q24498349Architecture and secondary structure of an entire HIV-1 RNA genome
Q40675740Circularization of the HIV-1 genome facilitates strand transfer during reverse transcription
Q34671913Comparison of SIV and HIV-1 genomic RNA structures reveals impact of sequence evolution on conserved and non-conserved structural motifs
Q36105948Conserved determinants of lentiviral genome dimerization
Q36230686Development of Small Molecules with a Noncanonical Binding Mode to HIV-1 Trans Activation Response (TAR) RNA.
Q33282788Efficient inhibition of HIV-1 expression by LNA modified antisense oligonucleotides and DNAzymes targeted to functionally selected binding sites
Q55343600Evaluation of global HIV/SIV envelope gp120 RNA structure and evolution within and among infected hosts.
Q24652354Evidence of a novel RNA secondary structure in the coding region of HIV-1 pol gene
Q40517865First snapshots of the HIV-1 RNA structure in infected cells and in virions.
Q40420777Full-length RNA structure prediction of the HIV-1 genome reveals a conserved core domain
Q28482125Functional and structural analysis of the internal ribosome entry site present in the mRNA of natural variants of the HIV-1
Q38323324HIV RNA dimerisation interference by antisense oligonucleotides targeted to the 5' UTR structural elements
Q40476785HIV-1 Pr55Gag binds genomic and spliced RNAs with different affinity and stoichiometry.
Q34666010HIV-1 RNA dimerization: It takes two to tango
Q36856964HIV-1 reverse transcription: close encounters between the viral genome and a cellular tRNA.
Q40530149HIV-1 sequences isolated from patients promote expression of shorter isoforms of the Gag polyprotein
Q54634504HIV-2 genomic RNA contains a novel type of IRES located downstream of its initiation codon.
Q37210511High-throughput SHAPE analysis reveals structures in HIV-1 genomic RNA strongly conserved across distinct biological states
Q36215749How retroviruses select their genomes
Q59352610Human T-cell leukemia virus type 1 Gag domains have distinct RNA-binding specificities with implications for RNA packaging and dimerization
Q24622200Identification of a minimal region of the HIV-1 5'-leader required for RNA dimerization, NC binding, and packaging
Q34489904Identification of biologically active, HIV TAR RNA-binding small molecules using small molecule microarrays
Q38321340In vitro and in vivo analysis of the interaction between RNA helicase A and HIV-1 RNA.
Q37224783In-gel probing of individual RNA conformers within a mixed population reveals a dimerization structural switch in the HIV-1 leader
Q46227536Increasing the CpG dinucleotide abundance in the HIV-1 genomic RNA inhibits viral replication.
Q34477931Inhibition of 5'-UTR RNA conformational switching in HIV-1 using antisense PNAs
Q36443702Internal translation initiation from HIV-1 transcripts is conferred by a common RNA structure
Q57899327In vitrostudies reveal that different modes of initiation on HIV-1 mRNA have different levels of requirement for eukaryotic initiation factor 4F
Q38188271Life of psi: how full-length HIV-1 RNAs become packaged genomes in the viral particles
Q91231366Mapping the RNA structural landscape of viral genomes
Q28071352NMR Studies of the Structure and Function of the HIV-1 5'-Leader
Q35909166NMR detection of structures in the HIV-1 5'-leader RNA that regulate genome packaging
Q42110362Potential intra- and intermolecular interactions involving the unique-5' region of the HIV-1 5'-UTR.
Q27490443RNA conformational changes in the life cycles of RNA viruses, viroids, and virus-associated RNAs
Q41728112RNA secondary structure of the feline immunodeficiency virus 5'UTR and Gag coding region
Q36807232Regulation of primate lentiviral RNA dimerization by structural entrapment
Q55287042Retroviral RNA Dimerization: From Structure to Functions.
Q39577905Ribosomal scanning on the 5'-untranslated region of the human immunodeficiency virus RNA genome
Q35468374Role of HIV-1 RNA and protein determinants for the selective packaging of spliced and unspliced viral RNA and host U6 and 7SL RNA in virus particles
Q37628044Small-angle X-ray scattering-derived structure of the HIV-1 5' UTR reveals 3D tRNA mimicry
Q37509306Splicing affects presentation of RNA dimerization signals in HIV-2 in vitro
Q36573996Structural Insights into the HIV-1 Minus-strand Strong-stop DNA.
Q24632055Structural determinants and mechanism of HIV-1 genome packaging
Q37974642Structural dynamics of retroviral genome and the packaging
Q42235872Structural insight into HIV-1 reverse transcription initiation in MAL-like templates (CRF01_AE, subtype G and CRF02_AG).
Q43463444Structural model of the complete poly(A) region of HIV-1 pre-mRNA.
Q25255012Structural polymorphism of the HIV-1 leader region explored by computational methods
Q28076985The Life-Cycle of the HIV-1 Gag-RNA Complex
Q34491104The determination of importance of sequences neighboring the Psi sequence in lentiviral vector transduction and packaging efficiency
Q47555138The effect of RNA substitution models on viroid and RNA virus phylogenies
Q43118009Three-dimensional RNA structure of the major HIV-1 packaging signal region
Q36708965Translational control of retroviruses.
Q33912389Viral SELEX reveals individual and cooperative roles of the C-box and G-box in HIV-2 replication
Q35534970Visualizing the global secondary structure of a viral RNA genome with cryo-electron microscopy

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