| scholarly article | Q13442814 |
| review article | Q7318358 |
| P50 | author | Chris Ponting | Q5107785 |
| P2093 | author name string | L Aravind | |
| P2860 | cites work | PairWise and SearchWise: finding the optimal alignment in a simultaneous comparison of a protein profile against all DNA translation frames | Q21061196 |
| A family of potassium channel genes related to eag in Drosophila and mammals | Q24563554 | ||
| Azotobacter vinelandii NIFL is a flavoprotein that modulates transcriptional activation of nitrogen-fixation genes via a redox-sensitive switch | Q24567898 | ||
| 1.4 A structure of photoactive yellow protein, a cytosolic photoreceptor: unusual fold, active site, and chromophore | Q27730238 | ||
| Cloning of a Factor Required for Activity of the Ah (Dioxin) Receptor | Q28282451 | ||
| Isolation of timeless by PER protein interaction: defective interaction between timeless protein and long-period mutant PERL | Q28284155 | ||
| Combining evolutionary information and neural networks to predict protein secondary structure | Q29614392 | ||
| A workbench for multiple alignment construction and analysis | Q29618211 | ||
| Hidden Markov models | Q29622874 | ||
| Neurospora wc-1 and wc-2: transcription, photoresponses, and the origins of circadian rhythmicity | Q34422724 | ||
| The Drosophila single-minded gene encodes a helix-loop-helix protein that acts as a master regulator of CNS midline development | Q34645410 | ||
| A signal transducer for aerotaxis in Escherichia coli | Q35625042 | ||
| Local alignment statistics | Q36811813 | ||
| The FixL protein of Rhizobium meliloti can be separated into a heme-binding oxygen-sensing domain and a functional C-terminal kinase domain | Q37000795 | ||
| Atypical phytochrome gene structure in the green alga Mesotaenium caldariorum | Q38288376 | ||
| Signal transduction schemes of bacteria | Q40710183 | ||
| Genetics and molecular analysis of circadian rhythms | Q41291368 | ||
| The hypoxic response: huffing and HIFing | Q41420638 | ||
| Subunit interactions in the carboxy-terminal domain of phytochrome | Q43527454 | ||
| PAS is a dimerization domain common to Drosophila period and several transcription factors. | Q52545395 | ||
| Structural consequences of sequence patterns in the fingerprint region of the nucleotide binding fold. Implications for nucleotide specificity | Q67595083 | ||
| P433 | issue | 11 | |
| P407 | language of work or name | English | Q1860 |
| P304 | page(s) | R674-7 | |
| P577 | publication date | 1997-11-01 | |
| P1433 | published in | Current Biology | Q1144851 |
| P1476 | title | PAS: a multifunctional domain family comes to light | |
| P478 | volume | 7 |
| Q50084680 | 12 Reversible methylation of glutamate residues in the receptor proteins of bacterial sensory systems. |
| Q37449708 | A Genome-Wide Identification and Analysis of the Basic Helix-Loop-Helix Transcription Factors in Brown Planthopper, Nilaparvata lugens |
| Q30394963 | A conserved helical capping hydrogen bond in PAS domains controls signaling kinetics in the superfamily prototype photoactive yellow protein |
| Q34452206 | A differential response of two putative mammalian circadian regulators, mper1 and mper2, to light. |
| Q34109936 | A dominant negative zebrafish Ahr2 partially protects developing zebrafish from dioxin toxicity |
| Q34400147 | A genome-wide identification and analysis of the basic helix-loop-helix transcription factors in the ponerine ant, Harpegnathos saltator |
| Q44768445 | A genomic analysis of two-component signal transduction in Streptococcus pneumoniae |
| Q31949873 | A phytochrome from the fern Adiantum with features of the putative photoreceptor NPH1. |
| Q34653754 | Activation of the diguanylate cyclase PleD by phosphorylation-mediated dimerization |
| Q34729382 | Altered behavioral rhythms and clock gene expression in mice with a targeted mutation in the Period1 gene |
| Q43801295 | Analysis and functional expression of NPP pathway-specific regulatory genes in Pseudonocardia autotrophica |
| Q24798253 | Ancient conserved domains shared by animal soluble guanylyl cyclases and bacterial signaling proteins |
| Q24803459 | Application of comparative genomics in the identification and analysis of novel families of membrane-associated receptors in bacteria |
| Q27653363 | Artificial ligand binding within the HIF2 PAS-B domain of the HIF2 transcription factor |
| Q24796376 | BRCA1-mediated repression of select X chromosome genes |
| Q89600908 | Blakeslea trispora Photoreceptors: Identification and Functional Analysis |
| Q34094003 | CHASE: an extracellular sensing domain common to transmembrane receptors from prokaryotes, lower eukaryotes and plants |
| Q30965285 | Cache - a signaling domain common to animal Ca(2+)-channel subunits and a class of prokaryotic chemotaxis receptors |
| Q28551212 | Cache Domains That are Homologous to, but Different from PAS Domains Comprise the Largest Superfamily of Extracellular Sensors in Prokaryotes |
| Q34697631 | CbrA is a stationary-phase regulator of cell surface physiology and legume symbiosis in Sinorhizobium meliloti. |
| Q24627219 | Cell cycle-dependent dynamic localization of a bacterial response regulator with a novel di-guanylate cyclase output domain |
| Q59263274 | Characterization of PAS domains in Frankia and selected Actinobacteria and their possible interaction with other co-domains for environmental adaptation |
| Q42608552 | Characterization of a Candida albicans gene encoding a putative transcriptional factor required for cell wall integrity |
| Q39404097 | Classification and evolutionary analysis of the basic helix-loop-helix gene family in the green anole lizard, Anolis carolinensis. |
| Q38361459 | Classification and expression analysis of Arabidopsis F-box-containing protein genes |
| Q28368278 | Cloning and characterization of a cAMP-specific cyclic nucleotide phosphodiesterase |
| Q42615290 | Cloning of components of a novel subthreshold-activating K(+) channel with a unique pattern of expression in the cerebral cortex. |
| Q34491429 | Common extracellular sensory domains in transmembrane receptors for diverse signal transduction pathways in bacteria and archaea |
| Q41834805 | Comparative genomics of cyclic-di-GMP signalling in bacteria: post-translational regulation and catalytic activity. |
| Q37340595 | Conservation and divergence of bHLH genes in the calcisponge Sycon ciliatum |
| Q42047214 | Constructing a feedback loop with circadian clock molecules from the silkmoth, Antheraea pernyi |
| Q27766251 | Crystal structure and functional analysis of the HERG potassium channel N terminus: a eukaryotic PAS domain |
| Q27652212 | Crystal structure of Pseudomonas aeruginosa bacteriophytochrome: Photoconversion and signal transduction |
| Q42000249 | Crystallization and preliminary X-ray analysis of a putative sensor histidine kinase domain: the C-terminal domain of HksP4 from Aquifex aeolicus VF5. |
| Q34720154 | Cyanobacterial two-component proteins: structure, diversity, distribution, and evolution |
| Q41889474 | Cyclic nucleotide phosphodiesterases in Drosophila melanogaster. |
| Q33335661 | Cyclic-di-GMP regulates extracellular polysaccharide production, biofilm formation, and rugose colony development by Vibrio vulnificus |
| Q83226314 | Cyclin-dependent kinase 5 (CDK5) regulates the circadian clock |
| Q46269455 | Daily rhythms and enrichment patterns in the transcriptome of the behavior-manipulating parasite Ophiocordyceps kimflemingiae |
| Q36500088 | De-repression of CSP-1 activates adaptive responses to antifungal azoles |
| Q37713363 | DhhP, a cyclic di-AMP phosphodiesterase of Borrelia burgdorferi, is essential for cell growth and virulence |
| Q38411339 | Dissection of the HOG pathway activated by hydrogen peroxide in Saccharomyces cerevisiae |
| Q42688668 | Distribution and phylogeny of light-oxygen-voltage-blue-light-signaling proteins in the three kingdoms of life |
| Q37200753 | Distribution, structure and diversity of "bacterial" genes encoding two-component proteins in the Euryarchaeota |
| Q34768956 | Domain architectures of sigma54-dependent transcriptional activators |
| Q35750272 | Domain organization and flavin adenine dinucleotide-binding determinants in the aerotaxis signal transducer Aer of Escherichia coli |
| Q39587152 | Domain structure, oligomeric state, and mutational analysis of PpsR, the Rhodobacter sphaeroides repressor of photosystem gene expression. |
| Q40719151 | Envoy, a PAS/LOV domain protein of Hypocrea jecorina (Anamorph Trichoderma reesei), modulates cellulase gene transcription in response to light |
| Q33761269 | Escherichia coli dihydroxyacetone kinase controls gene expression by binding to transcription factor DhaR. |
| Q36817238 | Eukaryotic phytochromes: light-regulated serine/threonine protein kinases with histidine kinase ancestry |
| Q30873629 | Evolution of domain families |
| Q34570945 | Evolution of sensory complexity recorded in a myxobacterial genome |
| Q38943941 | Expanding the view of Clock and cycle gene evolution in Diptera |
| Q50020611 | Exploring the (almost) unknown: archaeal two-component systems. |
| Q37344795 | FIST: a sensory domain for diverse signal transduction pathways in prokaryotes and ubiquitin signaling in eukaryotes |
| Q34231850 | FimX, a multidomain protein connecting environmental signals to twitching motility in Pseudomonas aeruginosa |
| Q42571161 | Fluorescence of phytochrome adducts with synthetic locked chromophores |
| Q42265665 | Functional analysis of nine putative chemoreceptor proteins in Sinorhizobium meliloti |
| Q34467977 | Fungal histidine kinases |
| Q36194990 | Genetic Modulation of c-di-GMP Turnover Affects Multiple Virulence Traits and Bacterial Virulence in Rice Pathogen Dickeya zeae |
| Q34180826 | Genetic analysis and functional characterization of the Streptococcus pneumoniae vic operon |
| Q46905894 | Genome-wide analysis and experimentation of plant serine/ threonine/tyrosine-specific protein kinases. |
| Q33304398 | Genome-wide survey of putative serine/threonine protein kinases in cyanobacteria |
| Q33784304 | Genomic structure of an economically important cyanobacterium, Arthrospira (Spirulina) platensis NIES-39 |
| Q47672504 | HIF-1alpha and iNOS levels in crucian carp gills during hypoxia-induced transformation. |
| Q53511141 | Highly conserved residues Asp-197 and His-250 in Agp1 phytochrome control the proton affinity of the chromophore and Pfr formation. |
| Q30935453 | HutC/FarR-like bacterial transcription factors of the GntR family contain a small molecule-binding domain of the chorismate lyase fold |
| Q36999045 | Hypoxia-inducible factors Per/ARNT/Sim domains: structure and function |
| Q35595976 | Identification of metabolism pathways directly regulated by sigma(54) factor in Bacillus thuringiensis |
| Q40604671 | Impact of the nuclear receptor coactivator AIB1 isoform AIB1-Delta3 on estrogenic ligands with different intrinsic activity. |
| Q40584907 | In vivo analysis of the regulatory genes in the nystatin biosynthetic gene cluster of Streptomyces noursei ATCC 11455 reveals their differential control over antibiotic biosynthesis. |
| Q52580266 | Intracellular localization and tissue specificity of the Methoprene-tolerant (Met) gene product in Drosophila melanogaster. |
| Q34182468 | Invited review: Sleeping flies don't lie: the use of Drosophila melanogaster to study sleep and circadian rhythms |
| Q33540532 | Ion channels: structure of a molecular brake |
| Q48119746 | Iron-Dependent Enzyme Catalyzes the Initial Step in Biodegradation of N-Nitroglycine by Variovorax sp. Strain JS1663. |
| Q44643412 | Juvenile hormone involvement in Drosophila melanogaster male reproduction as suggested by the Methoprene-tolerant27 mutant phenotype |
| Q61449530 | Key Players and Individualists of Cyclic-di-GMP Signaling in |
| Q31158140 | MEDS and PocR are novel domains with a predicted role in sensing simple hydrocarbon derivatives in prokaryotic signal transduction systems |
| Q50733977 | MEKHLA, a novel domain with similarity to PAS domains, is fused to plant homeodomain-leucine zipper III proteins. |
| Q28776160 | Measuring genome evolution |
| Q27676725 | Mechanistic Insights Revealed by the Crystal Structure of a Histidine Kinase with Signal Transducer and Sensor Domains |
| Q33265008 | MiST: a microbial signal transduction database |
| Q28603026 | Molecular Insights into Toluene Sensing in the TodS/TodT Signal Transduction System |
| Q38926318 | Molecular Mechanisms of Two-Component Signal Transduction |
| Q42042567 | Molecular control of polyene macrolide biosynthesis: direct binding of the regulator PimM to eight promoters of pimaricin genes and identification of binding boxes. |
| Q30350507 | Molecular evolution and population genetics of circadian clock genes. |
| Q33631455 | Molecular neurogenetics of biological rhythms |
| Q91718006 | Molecular response of Deinococcus radiodurans to simulated microgravity explored by proteometabolomic approach |
| Q34315368 | More than one way to sense chemicals. |
| Q38937075 | Multiple functions and essential roles of nuclear receptor coactivators of bHLH-PAS family |
| Q39963895 | New protein-protein interactions identified for the regulatory and structural components and substrates of the type III Secretion system of the phytopathogen Xanthomonas axonopodis Pathovar citri. |
| Q24553945 | Nuclear export of mammalian PERIOD proteins |
| Q42733261 | Opening Pandora's Box: making biological discoveries through computational data exploration |
| Q28763194 | Origin and diversification of the basic helix-loop-helix gene family in metazoans: insights from comparative genomics |
| Q37574012 | PAS domain of the Aer redox sensor requires C-terminal residues for native-fold formation and flavin adenine dinucleotide binding |
| Q35652607 | PAS domain residues involved in signal transduction by the Aer redox sensor of Escherichia coli |
| Q29615332 | PAS domains: internal sensors of oxygen, redox potential, and light |
| Q78555207 | PASsing a signal: low carbs, less protein |
| Q48352613 | PASting together the mammalian clock |
| Q42640743 | Photo morphogenesis and photo response of the blue-light receptor gene Cmwc-1 in different strains of Cordyceps militaris |
| Q36253543 | Photoactive yellow protein: a structural prototype for the three-dimensional fold of the PAS domain superfamily. |
| Q33597218 | Photomophogenesis: Phytochrome takes a partner! |
| Q34776677 | Phytochrome ancestry: sensors of bilins and light. |
| Q34883534 | Reductive evolution and the loss of PDC/PAS domains from the genus Staphylococcus |
| Q40893684 | Regional modulation of a stochastically expressed factor determines photoreceptor subtypes in the Drosophila retina. |
| Q33745070 | Remembrance of things PAS: regulation of development by bHLH-PAS proteins |
| Q33646946 | Role of the VirA histidine autokinase of Agrobacterium tumefaciens in the initial steps of pathogenesis |
| Q48026765 | Roles in dimerization and blue light photoresponse of the PAS and LOV domains of Neurospora crassa white collar proteins. |
| Q37791165 | Sensing by the membrane-bound sensor kinase DcuS: exogenous versus endogenous sensing of C(4)-dicarboxylates in bacteria |
| Q36328080 | Sensor complexes regulating two-component signal transduction |
| Q26798441 | Setting the PAS, the role of circadian PAS domain proteins during environmental adaptation in plants |
| Q35081028 | Shewanella oneidensis MR-1 sensory box protein involved in aerobic and anoxic growth |
| Q39539323 | Sinorhizobium meliloti chemoreceptor McpU mediates chemotaxis toward host plant exudates through direct proline sensing. |
| Q64946578 | Small-angle X-ray scattering study of the kinetics of light-dark transition in a LOV protein. |
| Q34611047 | Specific genetic interference with behavioral rhythms in Drosophila by expression of inverted repeats |
| Q48043325 | Spectroscopic Investigation on the Primary Photoreaction of Bathy Phytochrome Agp2-Pr of Agrobacterium fabrum: Isomerization in a pH-dependent H-bond Network |
| Q35606396 | Streptophyte phytochromes exhibit an N-terminus of cyanobacterial origin and a C-terminus of proteobacterial origin |
| Q36671880 | Structural and thermodynamic consequences of b heme binding for monomeric apoglobins and other apoproteins |
| Q27674677 | Structural basis for cytokinin recognition by Arabidopsis thaliana histidine kinase 4 |
| Q59329798 | Structural snapshot of a bacterial phytochrome in its functional intermediate state |
| Q38921845 | Structure and Function of the Stressosome Signalling Hub. |
| Q35008317 | Structure and signaling mechanism of Per-ARNT-Sim domains |
| Q30838981 | Structure of a LOV protein in apo-state and implications for construction of LOV-based optical tools |
| Q27630591 | Structure of a flavin-binding plant photoreceptor domain: Insights into light-mediated signal transduction |
| Q24631262 | Structure of the GAF domain, a ubiquitous signaling motif and a new class of cyclic GMP receptor |
| Q27654044 | Structure of the Redox Sensor Domain of Methylococcus capsulatus (Bath) MmoS † ‡ |
| Q34361043 | Structure prediction, evolution and ligand interaction of CHASE domain |
| Q90284560 | Subcellular Localization Signals of bHLH-PAS Proteins: Their Significance, Current State of Knowledge and Future Perspectives |
| Q24297523 | Substrate preference and phosphatidylinositol monophosphate inhibition of the catalytic domain of the Per-Arnt-Sim domain kinase PASKIN |
| Q35924019 | Targeted disruption of the mouse PAS domain serine/threonine kinase PASKIN |
| Q35755918 | Temporal Gene Expression of the Cyanobacterium Arthrospira in Response to Gamma Rays |
| Q31014709 | The CHASE domain: a predicted ligand-binding module in plant cytokinin receptors and other eukaryotic and bacterial receptors |
| Q34452640 | The GAF domain: an evolutionary link between diverse phototransducing proteins. |
| Q43559639 | The H2 sensor of Ralstonia eutropha. Biochemical characteristics, spectroscopic properties, and its interaction with a histidine protein kinase |
| Q27642109 | The HERG K+ channel: progress in understanding the molecular basis of its unusual gating kinetics |
| Q30886979 | The HWE histidine kinases, a new family of bacterial two-component sensor kinases with potentially diverse roles in environmental signaling |
| Q35632122 | The NifL-NifA System: a multidomain transcriptional regulatory complex that integrates environmental signals. |
| Q27666661 | The N–Terminal Tail of hERG Contains an Amphipathic α–Helix That Regulates Channel Deactivation |
| Q92185904 | The Salmonella virulence protein MgtC promotes phosphate uptake inside macrophages |
| Q59959371 | The aryl hydrocarbon receptor: A comparative perspective |
| Q27670628 | The crystal structure of the periplasmic domain ofVibrio parahaemolyticusCpxA |
| Q22065756 | The genome of M. acetivorans reveals extensive metabolic and physiological diversity |
| Q47946668 | The mPer2 gene encodes a functional component of the mammalian circadian clock |
| Q90139907 | The metabolic sensor PASK is a histone 3 kinase that also regulates H3K4 methylation by associating with H3K4 MLL2 methyltransferase complex |
| Q37140972 | The multiple facets of Per2. |
| Q34009572 | The neuronal PAS domain protein 4 (Npas4) is required for new and reactivated fear memories |
| Q43203833 | The pH-responsive regulon of HP0244 (FlgS), the cytoplasmic histidine kinase of Helicobacter pylori |
| Q38039049 | The role of bacterial enhancer binding proteins as specialized activators of σ54-dependent transcription |
| Q36226866 | The second paradigm for activation of transcription. |
| Q33256438 | The signaling helix: a common functional theme in diverse signaling proteins |
| Q36357907 | The structure of phytochrome: a picture is worth a thousand spectra. |
| Q35759782 | The symbiosis regulator CbrA modulates a complex regulatory network affecting the flagellar apparatus and cell envelope proteins |
| Q35019001 | Time and development. |
| Q57232607 | Transcript map of the temperate Lactobacillus gasseri bacteriophage ϕadh |
| Q34770902 | Whence cometh the allosterome? |
| Q35696234 | Whole-genome analysis of two-component signal transduction genes in fungal pathogens |
| Q33937304 | YycH regulates the activity of the essential YycFG two-component system in Bacillus subtilis |
| Q92256630 | bHLH-PAS Proteins: Their Structure and Intrinsic Disorder |
| Q35837610 | σ54-dependent regulome in Desulfovibrio vulgaris Hildenborough |
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