Stability of mRNA/DNA and DNA/DNA duplexes affects mRNA transcription

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Stability of mRNA/DNA and DNA/DNA duplexes affects mRNA transcription is …
instance of (P31):
scholarly articleQ13442814

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P819ADS bibcode2007PLoSO...2..290K
P356DOI10.1371/JOURNAL.PONE.0000290
P3181OpenCitations bibliographic resource ID4279008
P932PMC publication ID1808433
P698PubMed publication ID17356699
P5875ResearchGate publication ID6449871

P50authorStoyno StoynovQ58227663
P2093author name stringAssen Roguev
Anna Ivanova
Dragomir B Krastev
Marina N Nedelcheva-Veleva
Rayna I Kraeva
Stoyno S Stoynov
P2860cites workMethods in comparative genomics: genome correspondence, gene identification and regulatory motif discovery.Q51992776
A thermodynamic analysis of RNA transcript elongation and termination in Escherichia coliQ52457324
The RNA-DNA hybrid maintains the register of transcription by preventing backtracking of RNA polymerase.Q54567869
Direct evidence for the effect of transcription on local DNA supercoiling in vivoQ67729392
Duplex destabilization in superhelical DNA is predicted to occur at specific transcriptional regulatory regionsQ70918168
Thermodynamic parameters to predict stability of RNA/DNA hybrid duplexesQ71709608
Dependence of the melting temperature of DNA on salt concentrationQ72721932
Sequencing and comparison of yeast species to identify genes and regulatory elementsQ22122502
Predicting DNA duplex stability from the base sequenceQ24629471
Susceptibility to superhelically driven DNA duplex destabilization: a highly conserved property of yeast replication originsQ24811478
Structural basis of transcription: an RNA polymerase II elongation complex at 3.3 A resolutionQ27631280
Structural basis of transcription: separation of RNA from DNA by RNA polymerase IIQ27643139
Life with 6000 genesQ27860877
Dissecting the regulatory circuitry of a eukaryotic genomeQ28131632
Exon tethering in transcription by RNA polymerase IIQ28302498
A high-resolution map of transcription in the yeast genomeQ30014822
Ease of DNA unwinding is a conserved property of yeast replication originsQ30450756
Rules of engagement: co-transcriptional recruitment of pre-mRNA processing factorsQ34419716
Genomic detection of new yeast pre-mRNA 3'-end-processing signalsQ34695183
Pausing by bacterial RNA polymerase is mediated by mechanistically distinct classes of signalsQ35152961
WEB-THERMODYN: Sequence analysis software for profiling DNA helical stabilityQ35207993
Thinking quantitatively about transcriptional regulation.Q36043488
DNA helical stability accounts for mutational defects in a yeast replication originQ36914362
Overextended RNA:DNA hybrid as a negative regulator of RNA polymerase II processivity.Q38311264
Stability of ribonucleic acid double-stranded helicesQ38361108
Statistical analysis of yeast genomic downstream sequences reveals putative polyadenylation signalsQ39542399
Probabilistic prediction of Saccharomyces cerevisiae mRNA 3'-processing sitesQ39597801
A comparison of mammalian and yeast pre-mRNA 3'-end processingQ41477066
P275copyright licenseCreative Commons Attribution 4.0 InternationalQ20007257
P6216copyright statuscopyrightedQ50423863
P433issue3
P407language of work or nameEnglishQ1860
P304page(s)e290
P577publication date2007-03-14
P1433published inPLOS OneQ564954
P1476titleStability of mRNA/DNA and DNA/DNA duplexes affects mRNA transcription
P478volume2

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cites work (P2860)
Q35098016Chromatin-dependent regulation of RNA polymerases II and III activity throughout the transcription cycle
Q47231567Endogenous LINE-1 (Long Interspersed Nuclear Element-1) Reverse Transcriptase Activity in Platelets Controls Translational Events Through RNA-DNA Hybrids
Q38324106Hydration changes upon DNA folding studied by osmotic stress experiments
Q39145304Optical tweezers studies of transcription by eukaryotic RNA polymerases
Q26740532Revealing Nucleic Acid Mutations Using Förster Resonance Energy Transfer-Based Probes
Q37271114Selection on codon bias in yeast: a transcriptional hypothesis
Q44983925The thermodynamic patterns of eukaryotic genes suggest a mechanism for intron-exon recognition.
Q36021678Unusual combinatorial involvement of poly-A/T tracts in organizing genes and chromatin in Dictyostelium
Q41898558Use of nucleic Acid analogs for the study of nucleic Acid interactions