review article | Q7318358 |
scholarly article | Q13442814 |
P50 | author | David L Bentley | Q55137036 |
P2860 | cites work | A slow RNA polymerase II affects alternative splicing in vivo | Q40627617 |
P433 | issue | 3 | |
P304 | page(s) | 251-256 | |
P577 | publication date | 2005-06-01 | |
P1433 | published in | Current Opinion in Cell Biology | Q13505682 |
P1476 | title | Rules of engagement: co-transcriptional recruitment of pre-mRNA processing factors | |
P478 | volume | 17 |
Q38290847 | 'Mediator-ing' messenger RNA processing. |
Q37448767 | 3'-End processing of histone pre-mRNAs in Drosophila: U7 snRNP is associated with FLASH and polyadenylation factors |
Q33813311 | 4sUDRB-seq: measuring genomewide transcriptional elongation rates and initiation frequencies within cells |
Q35641869 | A Function for the hnRNP A1/A2 Proteins in Transcription Elongation |
Q35022331 | A KH-domain RNA-binding protein interacts with FIERY2/CTD phosphatase-like 1 and splicing factors and is important for pre-mRNA splicing in Arabidopsis |
Q27934649 | A Requirement for the Saccharomyces cerevisiae Paf1 complex in snoRNA 3' end formation |
Q36424546 | A cis element between the TATA Box and the transcription start site of the major immediate-early promoter of human cytomegalovirus determines efficiency of viral replication |
Q44863809 | A contemporary, laboratory-intensive course on messenger RNA transcription and processing |
Q41656652 | A core complex of CPSF73, CPSF100, and Symplekin may form two different cleavage factors for processing of poly(A) and histone mRNAs |
Q35688363 | A genome-wide analysis indicates that yeast pre-mRNA splicing is predominantly posttranscriptional |
Q34367969 | A model in vitro system for co-transcriptional splicing |
Q35220948 | A novel CDX2 isoform regulates alternative splicing |
Q42736746 | A novel assay identifies transcript elongation roles for the Nup84 complex and RNA processing factors. |
Q81741002 | A splicing regulator promotes transcriptional elongation |
Q38787111 | A splicing-dependent transcriptional checkpoint associated with prespliceosome formation. |
Q33419826 | Activation of host translational control pathways by a viral developmental switch |
Q36164324 | Aging and Loss of Circulating 17β-Estradiol Alters the Alternative Splicing of ERβ in the Female Rat Brain |
Q36579430 | Alteration of cyclin D1 transcript elongation by a mutated transcription factor up-regulates the oncogenic D1b splice isoform in cancer |
Q36141431 | Alternative Splicing of Toll-Like Receptor 9 Transcript in Teleost Fish Grouper Is Regulated by NF-κB Signaling via Phosphorylation of the C-Terminal Domain of the RPB1 Subunit of RNA Polymerase II |
Q36418590 | Alternative polyadenylation: new insights from global analyses |
Q33981279 | An interaction between KSHV ORF57 and UIF provides mRNA-adaptor redundancy in herpesvirus intronless mRNA export. |
Q37652978 | An unexpected ending: noncanonical 3' end processing mechanisms. |
Q39864591 | Analysis of RNA processing reactions using cell free systems: 3' end cleavage of pre-mRNA substrates in vitro. |
Q37033318 | Analysis of influenza B Virus NS1 protein trafficking reveals a novel interaction with nuclear speckle domains |
Q89250483 | Analysis of specific RNA in cultured cells through quantitative integration of q-PCR and N-SIM single cell FISH images: Application to hormonal stimulation of StAR transcription |
Q21263194 | Arabidopsis mRNA polyadenylation machinery: comprehensive analysis of protein-protein interactions and gene expression profiling |
Q39867690 | Assembly and mobility of exon-exon junction complexes in living cells |
Q37355954 | Assembly of an export-competent mRNP is needed for efficient release of the 3'-end processing complex after polyadenylation |
Q36796433 | Back to the origin: reconsidering replication, transcription, epigenetics, and cell cycle control |
Q37144184 | Biogenesis of mRNPs: integrating different processes in the eukaryotic nucleus |
Q37360004 | Bipartite functions of the CREB co-activators selectively direct alternative splicing or transcriptional activation |
Q24303611 | CDK12 is a transcription elongation-associated CTD kinase, the metazoan ortholog of yeast Ctk1 |
Q35834049 | CPSF30 at the Interface of Alternative Polyadenylation and Cellular Signaling in Plants |
Q37348799 | Cdk7 mediates RPB1-driven mRNA synthesis in Toxoplasma gondii |
Q40116941 | Cell-type-specific expression of the human CD68 gene is associated with changes in Pol II phosphorylation and short-range intrachromosomal gene looping |
Q24296280 | Characterization of hMTr1, a human Cap1 2'-O-ribose methyltransferase |
Q37955649 | Chlamydomonas reinhardtii as a viable platform for the production of recombinant proteins: current status and perspectives |
Q46675833 | Close coupling between transcription and exit of mRNP from the cell nucleus |
Q42182644 | Co-transcriptional degradation of aberrant pre-mRNA by Xrn2. |
Q37021156 | Combinatorial incorporation of enhancer-blocking components of the chicken beta-globin 5'HS4 and human T-cell receptor alpha/delta BEAD-1 insulators in self-inactivating retroviral vectors reduces their genotoxic potential |
Q41870191 | Competition within Introns: Splicing Wins over Polyadenylation via a General Mechanism |
Q34706714 | Complex and dynamic landscape of RNA polyadenylation revealed by PAS-Seq |
Q41936701 | Concurrent splicing and transcription are not sufficient to enhance splicing efficiency |
Q33708655 | Connections between alternative transcription and alternative splicing in mammals |
Q39544049 | Consensus PP1 binding motifs regulate transcriptional corepression and alternative RNA splicing activities of the steroid receptor coregulators, p54nrb and PSF. |
Q46908229 | Control and regulation of gene expression: quantitative analysis of the expression of phosphoglycerate kinase in bloodstream form Trypanosoma brucei |
Q21144446 | Control of pre-mRNA splicing by the general splicing factors PUF60 and U2AF(65) |
Q27664278 | Cooperative interaction of transcription termination factors with the RNA polymerase II C-terminal domain |
Q37346740 | Core structure of the yeast spt4-spt5 complex: a conserved module for regulation of transcription elongation |
Q80143464 | Cotranscriptional coupling of splicing factor recruitment and precursor messenger RNA splicing in mammalian cells |
Q41920187 | Cotranscriptional recruitment of the mRNA export factor Yra1 by direct interaction with the 3' end processing factor Pcf11. |
Q79327019 | Cotranscriptional splicing regulation: it's not just about speed |
Q34592670 | Coupling mRNA synthesis and decay |
Q39850003 | DNA damage regulates alternative splicing through inhibition of RNA polymerase II elongation. |
Q35227085 | DNA-Encoded Chromatin Structural Intron Boundary Signals Identify Conserved Genes with Common Function. |
Q35754282 | Decapping of long noncoding RNAs regulates inducible genes. |
Q34883246 | Depletion of REF/Aly alters gene expression and reduces RNA polymerase II occupancy |
Q39998735 | Depolarization-mediated regulation of alternative splicing |
Q27933085 | Direct interactions between the Paf1 complex and a cleavage and polyadenylation factor are revealed by dissociation of Paf1 from RNA polymerase II. |
Q39997363 | Distinct requirement of RNA polymerase II CTD phosphorylations in budding and fission yeast |
Q33568513 | Drosophila melanogaster retrotransposon and inverted repeat-derived endogenous siRNAs are differentially processed in distinct cellular locations. |
Q35221556 | EMB-4: a predicted ATPase that facilitates lin-12 activity in Caenorhabditis elegans |
Q24632981 | Editor meets silencer: crosstalk between RNA editing and RNA interference |
Q36130861 | Effects of ADARs on small RNA processing pathways in C. elegans |
Q35910114 | Emerging Views on the CTD Code |
Q39774238 | Enhanced mRNA cap methylation increases cyclin D1 expression and promotes cell transformation |
Q35791571 | Estimation of alternative splicing variability in human populations |
Q36052366 | Evidence that the localization of the elongation factor Spt16 across transcribed genes is dependent upon histone H3 integrity in Saccharomyces cerevisiae |
Q33791162 | Evolution at protein ends: major contribution of alternative transcription initiation and termination to the transcriptome and proteome diversity in mammals |
Q38148162 | Ewing sarcoma protein: a key player in human cancer |
Q52699670 | Exclusion of mRNPs and ribosomal particles from a thin zone beneath the nuclear envelope revealed upon inhibition of transport. |
Q36850001 | Expression of protein-coding genes embedded in ribosomal DNA. |
Q35739332 | FUS/TLS contributes to replication-dependent histone gene expression by interaction with U7 snRNPs and histone-specific transcription factors |
Q42574458 | Fast ribozyme cleavage releases transcripts from RNA polymerase II and aborts co-transcriptional pre-mRNA processing. |
Q34777700 | Finishing touches: post-translational modification of protein factors involved in mammalian pre-mRNA 3' end formation |
Q28751417 | Formation of the 3' end of histone mRNA: getting closer to the end |
Q41882250 | From structure to systems: high-resolution, quantitative genetic analysis of RNA polymerase II. |
Q34650438 | Functional coupling of RNAP II transcription to spliceosome assembly |
Q41911100 | Functional coupling of last-intron splicing and 3'-end processing to transcription in vitro: the poly(A) signal couples to splicing before committing to cleavage |
Q37147522 | Functional integration of transcriptional and RNA processing machineries |
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Q26863342 | Gene-specific requirement of RNA polymerase II CTD phosphorylation |
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Q33406244 | Genome-wide analysis of factors affecting transcription elongation and DNA repair: a new role for PAF and Ccr4-not in transcription-coupled repair. |
Q29616717 | Genome-wide analysis of mammalian promoter architecture and evolution |
Q53135142 | Genome-wide control of polyadenylation site choice by CPSF30 in Arabidopsis. |
Q34605595 | Global impact of RNA polymerase II elongation inhibition on alternative splicing regulation |
Q54214251 | HIV latency reversing agents act through Tat post translational modifications. |
Q38088112 | How cells get the message: dynamic assembly and function of mRNA-protein complexes |
Q58611909 | Human RNA cap1 methyltransferase CMTr1 cooperates with RNA helicase DHX15 to modify RNAs with highly structured 5' termini |
Q37186872 | Human cap methyltransferase (RNMT) N-terminal non-catalytic domain mediates recruitment to transcription initiation sites |
Q24338302 | Human mRNA export machinery recruited to the 5' end of mRNA |
Q34545620 | ICP27 interacts with the C-terminal domain of RNA polymerase II and facilitates its recruitment to herpes simplex virus 1 transcription sites, where it undergoes proteasomal degradation during infection |
Q39600021 | Identification of Tat-SF1 cellular targets by exon array analysis reveals dual roles in transcription and splicing |
Q40851164 | In vitro systems for coupling RNAP II transcription to splicing and polyadenylation |
Q33252529 | In vivo commitment to yeast cotranscriptional splicing is sensitive to transcription elongation mutants |
Q37088096 | In vivo dynamics of RNA polymerase II transcription. |
Q45417487 | Influenza virus inhibits RNA polymerase II elongation |
Q38355923 | Innate immune restriction and antagonism of viral RNA lacking 2׳-O methylation |
Q50495729 | Integrating haplotypes and single genetic variability effects of the Pax7 gene on growth traits in two cattle breeds. |
Q37962775 | Integrating transcription kinetics with alternative polyadenylation and cell cycle control. |
Q27320819 | Integration of the unfolded protein and oxidative stress responses through SKN-1/Nrf |
Q35641224 | Interaction of yeast RNA-binding proteins Nrd1 and Nab3 with RNA polymerase II terminator elements |
Q37101927 | Intragenic epigenetic changes modulate NCAM alternative splicing in neuronal differentiation |
Q36732545 | Intronic sequence elements impede exon ligation and trigger a discard pathway that yields functional telomerase RNA in fission yeast |
Q46664772 | Involvement of Pta1, Pcf11 and a KlCYC1 AU-rich element in alternative RNA 3'-end processing selection in yeast |
Q37367998 | Isolation and functional analysis of RNA polymerase II elongation complexes. |
Q54588177 | Keeping mRNPs in check during assembly and nuclear export. |
Q48769916 | Localized co-transcriptional recruitment of the multifunctional RNA-binding protein CELF1 by lampbrush chromosome transcription units |
Q27333569 | Loss of PTB or negative regulation of Notch mRNA reveals distinct zones of Notch and actin protein accumulation in Drosophila embryo |
Q35914094 | MYBS: a comprehensive web server for mining transcription factor binding sites in yeast |
Q50327954 | MYC Mediates mRNA Cap Methylation of Canonical Wnt/β-Catenin Signaling Transcripts By Recruiting CDK7 and RNA Methyltransferase |
Q37388994 | Meayamycin inhibits pre-messenger RNA splicing and exhibits picomolar activity against multidrug-resistant cells |
Q35179872 | Mechanism of alternative splicing and its regulation |
Q36578696 | Mechanism of transcriptional activation by the Myc oncoproteins |
Q37386626 | Mechanotransduction at a distance: mechanically coupling the extracellular matrix with the nucleus |
Q42418612 | Molecular architecture of the human pre-mRNA 3' processing complex |
Q35078202 | Molecular crowding inhibits U-insertion/deletion RNA editing in vitro: consequences for the in vivo reaction |
Q26783595 | Multiple Export Mechanisms for mRNAs |
Q34407825 | Myc Regulation of mRNA Cap Methylation |
Q42789906 | Myc up-regulates formation of the mRNA methyl cap. |
Q37132771 | Neuronal cell depolarization induces intragenic chromatin modifications affecting NCAM alternative splicing. |
Q37058515 | Non-coding RNAs regulating the transcriptional machinery |
Q33840158 | Notch and delta mRNAs in early-stage and mid-stage drosophila embryos exhibit complementary patterns of protein-producing potentials |
Q30944989 | Notch mRNA expression in Drosophila embryos is negatively regulated at the level of mRNA 3' processing |
Q24293319 | Novel domains in the hnRNP G/RBMX protein with distinct roles in RNA binding and targeting nascent transcripts |
Q34499614 | Nuclear RNA sequencing of the mouse erythroid cell transcriptome |
Q34497927 | Nuclear activity of sperm cells during Hyacinthus orientalis L. in vitro pollen tube growth |
Q28081155 | Nuclear export of messenger RNA |
Q37651988 | Nuclear networking fashions pre-messenger RNA and primary microRNA transcripts for function |
Q27932591 | Nuclear transport factor directs localization of protein synthesis during mitosis |
Q37809760 | Nucleocytoplasmic mRNP export is an integral part of mRNP biogenesis |
Q33611294 | Nucleophosmin is selectively deposited on mRNA during polyadenylation |
Q44504209 | Nucleosome distribution near the 3' ends of genes in the human genome |
Q46849980 | Nucleosome positioning as a determinant of exon recognition |
Q26741360 | P-TEFb goes viral |
Q38896947 | P-TEFb goes viral. |
Q33565484 | PRDM Proteins: Molecular Mechanisms in Signal Transduction and Transcriptional Regulation |
Q27313223 | Perturbation of chromatin structure globally affects localization and recruitment of splicing factors |
Q36909302 | Phylogenetic analysis of mRNA polyadenylation sites reveals a role of transposable elements in evolution of the 3'-end of genes |
Q42566449 | Pin1 regulates parathyroid hormone mRNA stability |
Q42144123 | Playing inside the genes: Intragenic histone acetylation after membrane depolarization of neural cells opens a path for alternative splicing regulation |
Q35613366 | Pol I transcription and pre-rRNA processing are coordinated in a transcription-dependent manner in mammalian cells |
Q37693565 | Pre-mRNA 3'-end processing complex assembly and function |
Q37868141 | Pre-mRNA splicing: where and when in the nucleus |
Q33529075 | Processivity and coupling in messenger RNA transcription |
Q47714630 | Proteome analysis of protein partners to nucleosomes containing canonical H2A or the variant histones H2A.Z or H2A.X. |
Q37194592 | Quality control of mRNP in the nucleus |
Q38679087 | Quick or quality? How mRNA escapes nuclear quality control during stress |
Q24297879 | RAM/Fam103a1 is required for mRNA cap methylation |
Q41940904 | RNA Polymerase II Elongation at the Crossroads of Transcription and Alternative Splicing |
Q47856872 | RNA decay systems enhance reciprocal switching of sense and antisense transcripts in response to glucose starvation. |
Q37806517 | RNA folding in living cells |
Q27000261 | RNA helicases in splicing |
Q40222409 | RNA polymerase II C-terminal domain mediates regulation of alternative splicing by SRp20. |
Q34498143 | RNA polymerase II CTD phosphopeptides compete with RNA for the interaction with Pcf11. |
Q37992154 | RNA polymerase II elongation control |
Q35048913 | RNA polymerase II kinetics in polo polyadenylation signal selection. |
Q36588947 | RNA polymerase II mutations conferring defects in poly(A) site cleavage and termination in Saccharomyces cerevisiae |
Q34009055 | RNA polymerase II pauses and associates with pre-mRNA processing factors at both ends of genes. |
Q34305741 | RNA polymerase II pausing downstream of core histone genes is different from genes producing polyadenylated transcripts |
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Q33758327 | RNA-dependent chromatin association of transcription elongation factors and Pol II CTD kinases. |
Q37439783 | Rates of in situ transcription and splicing in large human genes |
Q33713852 | Rational design of antisense oligomers to induce dystrophin exon skipping. |
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Q36915028 | Reflections on the history of pre-mRNA processing and highlights of current knowledge: a unified picture |
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Q39791099 | S-adenosyl homocysteine hydrolase is required for Myc-induced mRNA cap methylation, protein synthesis, and cell proliferation. |
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Q28512917 | SR proteins collaborate with 7SK and promoter-associated nascent RNA to release paused polymerase |
Q24654094 | SR proteins in vertical integration of gene expression from transcription to RNA processing to translation |
Q24641891 | Sam68 regulates translation of target mRNAs in male germ cells, necessary for mouse spermatogenesis |
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