| scholarly article | Q13442814 |
| P2093 | author name string | Biswadip Das | |
| Debasish Sarkar | |||
| Subhadeep Das | |||
| P2860 | cites work | Phosphorylation and inactivation of Tob contributes to the progression of papillary carcinoma of the thyroid | Q81520552 |
| Transcription and mRNA stability: parental guidance suggested | Q83129986 | ||
| Promoter elements regulate cytoplasmic mRNA decay | Q83129997 | ||
| The RNA-binding protein KSRP promotes decay of beta-catenin mRNA and is inactivated by PI3K-AKT signaling | Q21145899 | ||
| Extensive association of functionally and cytotopically related mRNAs with Puf family RNA-binding proteins in yeast | Q21146425 | ||
| Tob2, a novel anti-proliferative Tob/BTG1 family member, associates with a component of the CCR4 transcriptional regulatory complex capable of binding cyclin-dependent kinases | Q22010949 | ||
| The leukemia-associated protein Btg1 and the p53-regulated protein Btg2 interact with the homeoprotein Hoxb9 and enhance its transcriptional activation | Q22011002 | ||
| Cloning of PC3B, a novel member of the PC3/BTG/TOB family of growth inhibitory genes, highly expressed in the olfactory epithelium | Q24290276 | ||
| Relationships of the antiproliferative proteins BTG1 and BTG2 with CAF1, the human homolog of a component of the yeast CCR4 transcriptional complex: involvement in estrogen receptor alpha signaling pathway | Q24290687 | ||
| Evidence for a pioneer round of mRNA translation: mRNAs subject to nonsense-mediated decay in mammalian cells are bound by CBP80 and CBP20 | Q24291673 | ||
| AU binding proteins recruit the exosome to degrade ARE-containing mRNAs | Q24291926 | ||
| CCR4, a 3'-5' poly(A) RNA and ssDNA exonuclease, is the catalytic component of the cytoplasmic deadenylase | Q24292432 | ||
| The scavenger mRNA decapping enzyme DcpS is a member of the HIT family of pyrophosphatases | Q24305331 | ||
| The Ccr4-NOT deadenylase subunits CNOT7 and CNOT8 have overlapping roles and modulate cell proliferation | Q24314993 | ||
| A nuclear cap binding protein complex involved in pre-mRNA splicing | Q24318104 | ||
| The far upstream element-binding proteins comprise an ancient family of single-strand DNA-binding transactivators | Q24323052 | ||
| Interaction of BTG1 and p53-regulated BTG2 gene products with mCaf1, the murine homolog of a component of the yeast CCR4 transcriptional regulatory complex | Q24336221 | ||
| ANA, a novel member of Tob/BTG1 family, is expressed in the ventricular zone of the developing central nervous system | Q24336775 | ||
| The candidate tumor suppressor BTG3 is a transcriptional target of p53 that inhibits E2F1 | Q24337174 | ||
| Ski7p G protein interacts with the exosome and the Ski complex for 3'-to-5' mRNA decay in yeast | Q24535685 | ||
| Human Dcp2: a catalytically active mRNA decapping enzyme located in specific cytoplasmic structures | Q24543188 | ||
| The p65 (RelA) subunit of NF-kappaB interacts with the histone deacetylase (HDAC) corepressors HDAC1 and HDAC2 to negatively regulate gene expression | Q24548310 | ||
| Tethering KSRP, a decay-promoting AU-rich element-binding protein, to mRNAs elicits mRNA decay | Q24548948 | ||
| Function of the ski4p (Csl4p) and Ski7p proteins in 3'-to-5' degradation of mRNA | Q24551147 | ||
| The roles of TTP and BRF proteins in regulated mRNA decay | Q24633013 | ||
| Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization | Q24657378 | ||
| Mechanism of mRNA deadenylation: evidence for a molecular interplay between translation termination factor eRF3 and mRNA deadenylases | Q24675982 | ||
| Cytoplasmic foci are sites of mRNA decay in human cells | Q24677437 | ||
| Human TOB, an antiproliferative transcription factor, is a poly(A)-binding protein-dependent positive regulator of cytoplasmic mRNA deadenylation | Q24681334 | ||
| Ccr4-Not complex: the control freak of eukaryotic cells | Q26823940 | ||
| Mechanisms of deadenylation-dependent decay | Q26829435 | ||
| Threading the barrel of the RNA exosome | Q26851853 | ||
| Yeast mitochondrial biogenesis: a role for the PUF RNA-binding protein Puf3p in mRNA localization | Q27301294 | ||
| Crystal structure of Dcp1p and its functional implications in mRNA decapping | Q27643076 | ||
| Structural Basis of Dcp2 Recognition and Activation by Dcp1 | Q27649872 | ||
| Phosphorylation-mediated unfolding of a KH domain regulates KSRP localization via 14-3-3 binding | Q27653675 | ||
| Exploring the metabolic and genetic control of gene expression on a genomic scale | Q27860705 | ||
| Lithium toxicity in yeast is due to the inhibition of RNA processing enzymes | Q33887852 | ||
| Role of the essential yeast protein PSU1 in p6anscriptional enhancement by the ligand-dependent activation function AF-2 of nuclear receptors | Q33890783 | ||
| Dynamic profiling of mRNA turnover reveals gene-specific and system-wide regulation of mRNA decay | Q33934924 | ||
| mRNA decapping in yeast requires dissociation of the cap binding protein, eukaryotic translation initiation factor 4E. | Q33966181 | ||
| mRNA export: an assembly line from genes to nuclear pores | Q33978326 | ||
| Coupled evolution of transcription and mRNA degradation | Q33979465 | ||
| Formation of export-competent mRNP: escaping nuclear destruction | Q33987252 | ||
| RNA turnover: unexpected consequences of being tailed | Q33989462 | ||
| Transcriptome kinetics is governed by a genome-wide coupling of mRNA production and degradation: a role for RNA Pol II | Q34023047 | ||
| On the importance of being co-transcriptional | Q34150533 | ||
| Assembly and transport of a premessenger RNP particle | Q34287429 | ||
| Nuclear export of RNA. | Q34364012 | ||
| RNA decay modulates gene expression and controls its fidelity | Q34364183 | ||
| Analysis of recombinant yeast decapping enzyme | Q34364990 | ||
| Coactivation of nuclear receptors and myogenic factors induces the major BTG1 influence on muscle differentiation | Q34388708 | ||
| Rules of engagement: co-transcriptional recruitment of pre-mRNA processing factors | Q34419716 | ||
| Glucose-dependent turnover of the mRNAs encoding succinate dehydrogenase peptides in Saccharomyces cerevisiae: sequence elements in the 5' untranslated region of the Ip mRNA play a dominant role | Q34451316 | ||
| Accumulation of unstable promoter-associated transcripts upon loss of the nuclear exosome subunit Rrp6p in Saccharomyces cerevisiae | Q34480038 | ||
| Genetic interactions between Nhp6 and Gcn5 with Mot1 and the Ccr4-Not complex that regulate binding of TATA-binding protein in Saccharomyces cerevisiae | Q34587825 | ||
| Coupling mRNA synthesis and decay | Q34592670 | ||
| Herpes simplex virus-infected cells contain a function(s) that destabilizes both host and viral mRNAs | Q34608970 | ||
| LPS induces KH-type splicing regulatory protein-dependent processing of microRNA-155 precursors in macrophages | Q34979721 | ||
| Metabolic labeling of RNA uncovers principles of RNA production and degradation dynamics in mammalian cells | Q35044194 | ||
| Early formation of mRNP: license for export or quality control? | Q35137961 | ||
| Coupling transcription, splicing and mRNA export | Q35145838 | ||
| The interplay of nuclear mRNP assembly, mRNA surveillance and export | Q35147368 | ||
| Nucleocytoplasmic transport: integrating mRNA production and turnover with export through the nuclear pore | Q35732522 | ||
| The eukaryotic Ccr4-not complex: a regulatory platform integrating mRNA metabolism with cellular signaling pathways? | Q35805081 | ||
| Genetic analysis of glucose regulation in saccharomyces cerevisiae: control of transcription versus mRNA turnover. | Q35843568 | ||
| Cell cycle-dependent transcription in yeast: promoters, transcription factors, and transcriptomes | Q36101736 | ||
| Cotranscriptional mRNP assembly: from the DNA to the nuclear pore | Q36131482 | ||
| TREX, SR proteins and export of mRNA. | Q36131499 | ||
| Process or perish: quality control in mRNA biogenesis | Q36149583 | ||
| Dynamic nuclear pore complexes: life on the edge. | Q36508009 | ||
| The Puf3 protein is a transcript-specific regulator of mRNA degradation in yeast | Q27929773 | ||
| Mapping pathways and phenotypes by systematic gene overexpression | Q27930674 | ||
| Gene expression is circular: factors for mRNA degradation also foster mRNA synthesis | Q27930898 | ||
| PUF proteins bind Pop2p to regulate messenger RNAs | Q27930941 | ||
| Genetic evidence supports a role for the yeast CCR4-NOT complex in transcriptional elongation. | Q27930971 | ||
| Single-molecule mRNA decay measurements reveal promoter- regulated mRNA stability in yeast | Q27931030 | ||
| Decapping activators in Saccharomyces cerevisiae act by multiple mechanisms. | Q27931642 | ||
| Regulation of Snf1 kinase. Activation requires phosphorylation of threonine 210 by an upstream kinase as well as a distinct step mediated by the Snf4 subunit | Q27931918 | ||
| Cryptic pol II transcripts are degraded by a nuclear quality control pathway involving a new poly(A) polymerase | Q27932117 | ||
| The DEAD box helicase, Dhh1p, functions in mRNA decapping and interacts with both the decapping and deadenylase complexes. | Q27932152 | ||
| The multifunctional Ccr4-Not complex directly promotes transcription elongation | Q27933267 | ||
| The RNA polymerase II subunit Rpb4p mediates decay of a specific class of mRNAs | Q27933345 | ||
| Nucleocytoplasmic shuttling of the Rpb4p and Rpb7p subunits of Saccharomyces cerevisiae RNA polymerase II by two pathways | Q27933627 | ||
| Cap-binding protein 1-mediated and eukaryotic translation initiation factor 4E-mediated pioneer rounds of translation in yeast | Q27934046 | ||
| The Rpb4 subunit of RNA polymerase II contributes to cotranscriptional recruitment of 3' processing factors | Q27934138 | ||
| The 3' to 5' degradation of yeast mRNAs is a general mechanism for mRNA turnover that requires the SKI2 DEVH box protein and 3' to 5' exonucleases of the exosome complex | Q27934144 | ||
| The yeast POP2 gene encodes a nuclease involved in mRNA deadenylation | Q27934881 | ||
| RNA polymerase II subunits link transcription and mRNA decay to translation. | Q27934915 | ||
| NOT1(CDC39), NOT2(CDC36), NOT3, and NOT4 encode a global-negative regulator of transcription that differentially affects TATA-element utilization | Q27935983 | ||
| Global analysis of eukaryotic mRNA degradation reveals Xrn1-dependent buffering of transcript levels | Q27935989 | ||
| Targeting an mRNA for decapping: displacement of translation factors and association of the Lsm1p-7p complex on deadenylated yeast mRNAs | Q27936762 | ||
| Ccr4p is the catalytic subunit of a Ccr4p/Pop2p/Notp mRNA deadenylase complex in Saccharomyces cerevisiae | Q27937531 | ||
| The transcription factor associated Ccr4 and Caf1 proteins are components of the major cytoplasmic mRNA deadenylase in Saccharomyces cerevisiae | Q27937565 | ||
| Dhh1p, a putative RNA helicase, associates with the general transcription factors Pop2p and Ccr4p from Saccharomyces cerevisiae | Q27937817 | ||
| The Rpb7p subunit of yeast RNA polymerase II plays roles in the two major cytoplasmic mRNA decay mechanisms. | Q27937902 | ||
| The enhancer of decapping proteins, Edc1p and Edc2p, bind RNA and stimulate the activity of the decapping enzyme | Q27937948 | ||
| RNA polymerase II subunit composition, stoichiometry, and phosphorylation | Q27938734 | ||
| The cell-cycle-regulated budding yeast gene DBF2, encoding a putative protein kinase, has a homologue that is not under cell-cycle control | Q27938888 | ||
| Targeting of aberrant mRNAs to cytoplasmic processing bodies | Q27939158 | ||
| Identification of new genes involved in the regulation of yeast alcohol dehydrogenase II. | Q27939580 | ||
| Rpb4p, a subunit of RNA polymerase II, mediates mRNA export during stress | Q27939602 | ||
| Dissociable Rpb4-Rpb7 subassembly of rna polymerase II binds to single-strand nucleic acid and mediates a post-recruitment step in transcription initiation. | Q27939905 | ||
| Polo kinase controls cell-cycle-dependent transcription by targeting a coactivator protein | Q27939923 | ||
| A cap binding protein that may mediate nuclear export of RNA polymerase II-transcribed RNAs | Q36531857 | ||
| The control of elongation by the yeast Ccr4-not complex | Q36532642 | ||
| Mutations in trans-acting factors affecting mRNA decapping in Saccharomyces cerevisiae | Q36563128 | ||
| The NOT, SPT3, and MOT1 genes functionally interact to regulate transcription at core promoters | Q36564000 | ||
| Snf1-Dependent Transcription Confers Glucose-Induced Decay upon the mRNA Product | Q36574869 | ||
| Determination of mRNA fate by different RNA polymerase II promoters | Q36632883 | ||
| Mechanisms and control of mRNA turnover in Saccharomyces cerevisiae. | Q36670947 | ||
| Degradation of mRNAs that lack a stop codon: a decade of nonstop progress | Q36802258 | ||
| mRNA stability and cancer: an emerging link? | Q36960486 | ||
| SNF1/AMPK pathways in yeast | Q36992466 | ||
| RNA quality control in eukaryotes | Q37005637 | ||
| CBP80-promoted mRNP rearrangements during the pioneer round of translation, nonsense-mediated mRNA decay, and thereafter | Q37013917 | ||
| XRN 5'→3' exoribonucleases: structure, mechanisms and functions. | Q37092102 | ||
| Biogenesis of mRNPs: integrating different processes in the eukaryotic nucleus | Q37144184 | ||
| Quality control of mRNP in the nucleus | Q37194592 | ||
| NMD: multitasking between mRNA surveillance and modulation of gene expression | Q37325822 | ||
| Polysomes, P bodies and stress granules: states and fates of eukaryotic mRNAs | Q37338867 | ||
| The RNA-binding protein KSRP promotes the biogenesis of a subset of microRNAs | Q37401219 | ||
| BTG/TOB factors impact deadenylases | Q37455743 | ||
| The fate of the messenger is pre-determined: a new model for regulation of gene expression | Q37477468 | ||
| "Cotranscriptionality": the transcription elongation complex as a nexus for nuclear transactions | Q37620941 | ||
| Linking gene regulation to mRNA production and export. | Q37827981 | ||
| The eukaryotic RNA exosome: same scaffold but variable catalytic subunits | Q37834909 | ||
| RNA in pieces | Q37899350 | ||
| The role of KSRP in mRNA decay and microRNA precursor maturation | Q37936370 | ||
| The Ccr4--not complex | Q37949473 | ||
| RNA degradation in Saccharomyces cerevisae | Q38025564 | ||
| Transcription-associated quality control of mRNP. | Q38043828 | ||
| Structural and functional control of the eukaryotic mRNA decapping machinery. | Q38071446 | ||
| RNA decay machines: deadenylation by the Ccr4-not and Pan2-Pan3 complexes. | Q38075754 | ||
| RNA decay machines: the exosome | Q38077004 | ||
| Eukaryotic mRNA decay: methodologies, pathways, and links to other stages of gene expression. | Q38087205 | ||
| How cells get the message: dynamic assembly and function of mRNA-protein complexes | Q38088112 | ||
| Mechanisms of mRNA export | Q38210592 | ||
| Multiple pathways are co-regulated by the protein kinase Snf1 and the transcription factors Adr1 and Cat8. | Q38355889 | ||
| Nonsense-mediated mRNA decay: an intricate machinery that shapes transcriptomes | Q38591386 | ||
| Post-transcriptional regulation through the HO 3'-UTR by Mpt5, a yeast homolog of Pumilio and FBF | Q27940237 | ||
| Robust heat shock induces eIF2alpha-phosphorylation-independent assembly of stress granules containing eIF3 and 40S ribosomal subunits in budding yeast, Saccharomyces cerevisiae. | Q27940310 | ||
| Alteration of expression or phosphorylation status of tob, a novel tumor suppressor gene product, is an early event in lung cancer | Q28187810 | ||
| In search of a function for the TIS21/PC3/BTG1/TOB family | Q28190978 | ||
| Tob is a negative regulator of activation that is expressed in anergic and quiescent T cells | Q28203889 | ||
| Association of ANA, a member of the antiproliferative Tob family proteins, with a Caf1 component of the CCR4 transcriptional regulatory complex | Q28203973 | ||
| The gene PC3(TIS21/BTG2), prototype member of the PC3/BTG/TOB family: regulator in control of cell growth, differentiation, and DNA repair? | Q28206741 | ||
| Exporting RNA from the nucleus to the cytoplasm | Q28245155 | ||
| RNA-quality control by the exosome | Q28251052 | ||
| The mammalian anti-proliferative BTG/Tob protein family | Q28258172 | ||
| A KH domain RNA binding protein, KSRP, promotes ARE-directed mRNA turnover by recruiting the degradation machinery | Q28264688 | ||
| Metabolism and regulation of canonical histone mRNAs: life without a poly(A) tail | Q28297786 | ||
| Cloning of the mouse BTG3 gene and definition of a new gene family (the BTG family) involved in the negative control of the cell cycle | Q28305726 | ||
| Widespread bidirectional promoters are the major source of cryptic transcripts in yeast | Q28307664 | ||
| p38-dependent phosphorylation of the mRNA decay-promoting factor KSRP controls the stability of select myogenic transcripts | Q28594660 | ||
| Integrating mRNA processing with transcription | Q28610124 | ||
| An extensive network of coupling among gene expression machines | Q29547273 | ||
| Bidirectional promoters generate pervasive transcription in yeast | Q29614766 | ||
| Progression through the RNA polymerase II CTD cycle | Q29614782 | ||
| Pre-mRNA processing reaches back to transcription and ahead to translation | Q29615045 | ||
| RNA-binding proteins TIA-1 and TIAR link the phosphorylation of eIF-2 alpha to the assembly of mammalian stress granules | Q29615265 | ||
| The exon-exon junction complex provides a binding platform for factors involved in mRNA export and nonsense-mediated mRNA decay | Q29616054 | ||
| RNA regulons: coordination of post-transcriptional events | Q29618919 | ||
| An essential component of the decapping enzyme required for normal rates of mRNA turnover | Q29620356 | ||
| RNA-destabilizing factor tristetraprolin negatively regulates NF-kappaB signaling | Q30434431 | ||
| Towards systematic discovery of signaling networks in budding yeast filamentous growth stress response using interventional phosphorylation data | Q30653362 | ||
| Mechanisms of cell cycle control revealed by a systematic and quantitative overexpression screen in S. cerevisiae | Q30845065 | ||
| Cell-cycle checkpoints that ensure coordination between nuclear and cytoplasmic events in Saccharomyces cerevisiae | Q33179758 | ||
| Links between mRNA splicing, mRNA quality control, and intellectual disability | Q33364292 | ||
| Heat shock response in yeast involves changes in both transcription rates and mRNA stabilities | Q33833790 | ||
| DBF2, a cell cycle-regulated protein kinase, is physically and functionally associated with the CCR4 transcriptional regulatory complex | Q33887373 | ||
| Recognition of yeast mRNAs as "nonsense containing" leads to both inhibition of mRNA translation and mRNA degradation: implications for the control of mRNA decapping | Q38614772 | ||
| Viral Nucleases Induce an mRNA Degradation-Transcription Feedback Loop in Mammalian Cells | Q38849238 | ||
| Loss of B-cell translocation gene-2 in estrogen receptor-positive breast carcinoma is associated with tumor grade and overexpression of cyclin d1 protein | Q40254036 | ||
| Ribozyme cleavage reveals connections between mRNA release from the site of transcription and pre-mRNA processing. | Q40342109 | ||
| Transcriptional priming of cytoplasmic post-transcriptional regulation | Q40645997 | ||
| Control of mRNA turnover as a mechanism of glucose repression in Saccharomyces cerevisiae | Q40655338 | ||
| Widespread promoter-mediated coordination of transcription and mRNA degradation | Q40666069 | ||
| Formation of cytoplasmic heat shock granules in tomato cell cultures and leaves | Q40680336 | ||
| Transcription in the nucleus and mRNA decay in the cytoplasm are coupled processes | Q41307665 | ||
| Lsm1 promotes genomic stability by controlling histone mRNA decay | Q41770464 | ||
| Specific and global regulation of mRNA stability during osmotic stress in Saccharomyces cerevisiae. | Q42050768 | ||
| Comparative dynamic transcriptome analysis (cDTA) reveals mutual feedback between mRNA synthesis and degradation | Q42236163 | ||
| A common strategy for host RNA degradation by divergent viruses | Q42270342 | ||
| Cell-cycle regulation of yeast histone mRNA. | Q42467119 | ||
| Tristetraprolin impairs NF-kappaB/p65 nuclear translocation | Q42683558 | ||
| Deficiency of antiproliferative family protein Ana correlates with development of lung adenocarcinoma | Q42805237 | ||
| CCR4 is a glucose-regulated transcription factor whose leucine-rich repeat binds several proteins important for placing CCR4 in its proper promoter context | Q43181834 | ||
| Transient transcriptional responses to stress are generated by opposing effects of mRNA production and degradation | Q43243061 | ||
| Systematic mutagenesis of the leucine-rich repeat (LRR) domain of CCR4 reveals specific sites for binding to CAF1 and a separate critical role for the LRR in CCR4 deadenylase activity | Q44735758 | ||
| A role for the non-phosphorylated form of yeast Snf1: tolerance to toxic cations and activation of potassium transport | Q45218402 | ||
| Two dissociable subunits of yeast RNA polymerase II stimulate the initiation of transcription at a promoter in vitro. | Q46211132 | ||
| Comparison of features of the RNase activity of 5'-exonuclease-1 and 5'-exonuclease-2 of Saccharomyces cerevisiae | Q50115299 | ||
| Phosphoproteomic analysis identifies proteins involved in transcription-coupled mRNA decay as targets of Snf1 signaling. | Q54339361 | ||
| Aberrant regulation of messenger RNA 3'-untranslated region in human cancer. | Q54753141 | ||
| Yeast histone genes show dosage compensation | Q70152493 | ||
| Differential effects of translational inhibition in cis and in trans on the decay of the unstable yeast MFA2 mRNA | Q72331940 | ||
| Characterization of NOT5 that encodes a new component of the Not protein complex | Q74342700 | ||
| Recombination and RNA processing: a common strand? | Q75292815 | ||
| Multifunctional deadenylase complexes diversify mRNA control | Q80854891 | ||
| P433 | issue | 7 | |
| P921 | main subject | Saccharomyces cerevisiae | Q719725 |
| P304 | page(s) | 212-228 | |
| P577 | publication date | 2017-07-03 | |
| P1433 | published in | Microbial cell (Graz, Austria) | Q56298176 |
| P1476 | title | The interplay between transcription and mRNA degradation in Saccharomyces cerevisiae | |
| P478 | volume | 4 |
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