Genome-scale metabolic model of Rhodococcus jostii RHA1 (iMT1174) to study the accumulation of storage compounds during nitrogen-limited condition

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Genome-scale metabolic model of Rhodococcus jostii RHA1 (iMT1174) to study the accumulation of storage compounds during nitrogen-limited condition is …
instance of (P31):
scholarly articleQ13442814

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P8978DBLP publication IDjournals/bmcsb/TajparastF15
P6179Dimensions Publication ID1034365739
P356DOI10.1186/S12918-015-0190-Y
P932PMC publication ID4528721
P698PubMed publication ID26248853
P5875ResearchGate publication ID280869341

P2093author name stringDominic Frigon
Mohammad Tajparast
P2860cites workAn expanded genome-scale model of Escherichia coli K-12 (iJR904 GSM/GPR)Q21194867
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The standard error of a weighted mean concentration—I. Bootstrapping vs other methodsQ57259396
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Expansion of the BioCyc collection of pathway/genome databases to 160 genomesQ24535096
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databasesQ24643451
The complete genome of Rhodococcus sp. RHA1 provides insights into a catabolic powerhouseQ24679239
Biosynthesis of storage compounds by Rhodococcus jostii RHA1 and global identification of genes involved in their metabolismQ27496619
The KEGG resource for deciphering the genomeQ27860687
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Synthesis and analysis of phytyl and phytenoyl wax estersQ28340724
Key enzymes for biosynthesis of neutral lipid storage compounds in prokaryotes: properties, function and occurrence of wax ester synthases/acyl-CoA: diacylglycerol acyltransferasesQ28487423
Flux balance analysis in the era of metabolomicsQ29026261
Escherichia coli K-12 undergoes adaptive evolution to achieve in silico predicted optimal growthQ29397612
A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic informationQ29615371
Quantitative prediction of cellular metabolism with constraint-based models: the COBRA ToolboxQ29615372
In silico predictions of Escherichia coli metabolic capabilities are consistent with experimental dataQ29618471
iMS2Flux--a high-throughput processing tool for stable isotope labeled mass spectrometric data used for metabolic flux analysisQ30577216
Determination of metabolic flux ratios from 13C-experiments and gas chromatography-mass spectrometry data: protocol and principlesQ31065954
Metabolic engineering of poly(3-hydroxyalkanoates): from DNA to plasticQ33538944
The University of Minnesota Biocatalysis/Biodegradation Database: improving public accessQ33601038
BiodesulfurizationQ33671046
Wax ester production from n-alkanes by Acinetobacter sp. strain M-1: ultrastructure of cellular inclusions and role of acyl coenzyme A reductaseQ34051053
A Novel Transformation of Polychlorinated Biphenyls by Rhodococcus sp. Strain RHA1.Q34422950
The biology and genetics of the genus RhodococcusQ35534666
Biodegradation by members of the genus Rhodococcus: biochemistry, physiology, and genetic adaptationQ36531240
Assay of poly-beta-hydroxybutyric acidQ37468013
Cloning and characterization of benzoate catabolic genes in the gram-positive polychlorinated biphenyl degrader Rhodococcus sp. strain RHA1.Q39505201
Characterization of biphenyl catabolic genes of gram-positive polychlorinated biphenyl degrader Rhodococcus sp. strain RHA1.Q39797754
Stoichiometric flux balance models quantitatively predict growth and metabolic by-product secretion in wild-type Escherichia coli W3110.Q39916365
Pseudomonas oleovorans as a Source of Poly(beta-Hydroxyalkanoates) for Potential Applications as Biodegradable Polyesters.Q39920217
Biotransformations catalyzed by the genus Rhodococcus.Q40754546
OpenFLUX: efficient modelling software for 13C-based metabolic flux analysisQ41973085
Genome-scale analysis of Streptomyces coelicolor A3(2) metabolismQ42658345
Multiplicity of aromatic ring hydroxylation dioxygenase genes in a strong PCB degrader, Rhodococcus sp. strain RHA1 demonstrated by denaturing gradient gel electrophoresis.Q43751325
Biocatalytic sulfur removal from fuels: applicability for producing low sulfur gasolineQ47754935
Bayesian-based selection of metabolic objective functionsQ48421839
P275copyright licenseCreative Commons Attribution 4.0 InternationalQ20007257
P6216copyright statuscopyrightedQ50423863
P433issue1
P407language of work or nameEnglishQ1860
P921main subjectstructural biologyQ908902
Rhodococcus jostiiQ21308283
P304page(s)43
P577publication date2015-08-07
P1433published inBMC Systems BiologyQ4835949
P1476titleGenome-scale metabolic model of Rhodococcus jostii RHA1 (iMT1174) to study the accumulation of storage compounds during nitrogen-limited condition
P478volume9

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