Translational research platforms integrating clinical and omics data: a review of publicly available solutions

scientific article

Translational research platforms integrating clinical and omics data: a review of publicly available solutions is …
instance of (P31):
scholarly articleQ13442814
review articleQ7318358

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P8978DBLP publication IDjournals/bib/CanuelRADB15
P356DOI10.1093/BIB/BBU006
P3181OpenCitations bibliographic resource ID1345681
P932PMC publication ID4364065
P698PubMed publication ID24608524
P5875ResearchGate publication ID260645698

P50authorAnita BurgunQ51753128
Bastien RanceQ57208068
Vincent CanuelQ58412877
P2093author name stringPatrice Degoulet
Paul Avillach
P2860cites workA Glimpse of the Next 100 Years in MedicineQ57240655
SHRINE: enabling nationally scalable multi-site disease studiesQ24288701
KEGG: kyoto encyclopedia of genes and genomesQ24515297
Cytoscape: a software environment for integrated models of biomolecular interaction networksQ24515682
RNA-Seq: a revolutionary tool for transcriptomicsQ24596169
Insights from genomic profiling of transcription factorsQ24611607
NCBI GEO: mining tens of millions of expression profiles--database and tools updateQ24675443
Toward Precision MedicineQ27021937
Effects of KRAS, BRAF, NRAS, and PIK3CA mutations on the efficacy of cetuximab plus chemotherapy in chemotherapy-refractory metastatic colorectal cancer: a retrospective consortium analysisQ27851573
Sequencing technologies - the next generationQ27860568
The cBio cancer genomics portal: an open platform for exploring multidimensional cancer genomics dataQ28266682
Next-generation genomics: an integrative approachQ28730711
iDASH: integrating data for analysis, anonymization, and sharingQ28732138
GenePattern 2.0Q29614171
RNA processing and its regulation: global insights into biological networksQ29615182
ChIP-seq: advantages and challenges of a maturing technologyQ29615336
The 2013 Nucleic Acids Research Database Issue and the online molecular biology database collectionQ30424320
An extensible application for assembling annotation for genomic dataQ30757743
The cancer translational research informatics platformQ33395867
Integrating physical and genetic maps: from genomes to interaction networksQ33609193
STRIDE--An integrated standards-based translational research informatics platformQ33626790
Methodology of integration of a clinical data warehouse with a clinical information system: the HEGP caseQ33692689
The clinical research data repository of the US National Institutes of Health.Q33692841
ArrayExpress update--an archive of microarray and high-throughput sequencing-based functional genomics experimentsQ33744808
iCOD: an integrated clinical omics database based on the systems-pathology view of diseaseQ33766704
Clinical validation of colorectal cancer biomarkers identified from bioinformatics analysis of public expression dataQ33815048
BRISK--research-oriented storage kit for biology-related dataQ33945185
The ONCO-I2b2 project: integrating biobank information and clinical data to support translational research in oncologyQ34011582
Principles and challenges of genomewide DNA methylation analysisQ34096366
The HL7 Clinical Document ArchitectureQ34172293
Serving the enterprise and beyond with informatics for integrating biology and the bedside (i2b2).Q34399891
PRIDE: the proteomics identifications databaseQ34436630
Introduction to translational bioinformatics collectionQ34539640
G-DOC: a systems medicine platform for personalized oncologyQ35238047
Detecting drug interactions from adverse-event reports: interaction between paroxetine and pravastatin increases blood glucose levels.Q35551787
Unified Medical Language System term occurrences in clinical notes: a large-scale corpus analysisQ36085108
Analysis of PTEN, BRAF, and EGFR status in determining benefit from cetuximab therapy in wild-type KRAS metastatic colon cancer.Q38934630
A personal view on systems medicine and the emergence of proactive P4 medicine: predictive, preventive, personalized and participatoryQ40027923
Effective knowledge management in translational medicineQ41873463
P275copyright licenseCreative Commons Attribution 4.0 InternationalQ20007257
P6216copyright statuscopyrightedQ50423863
P4510describes a project that usesCytoscapeQ3699942
P433issue2
P407language of work or nameEnglishQ1860
P921main subjectinformation systemQ121182
computational biologyQ177005
translational medical researchQ474859
data sharingQ5227350
P304page(s)280-90
P577publication date2015-03-01
P1433published inBriefings in BioinformaticsQ4967031
P1476titleTranslational research platforms integrating clinical and omics data: a review of publicly available solutions
P478volume16

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cites work (P2860)
Q95492556Q95492556
Q36319180A Review of Recent Advancement in Integrating Omics Data with Literature Mining towards Biomedical Discoveries
Q30826461A database of human exposomes and phenomes from the US National Health and Nutrition Examination Survey
Q88816752Ad Hoc Information Extraction for Clinical Data Warehouses
Q45945284Big data management challenges in health research-a literature review.
Q35881016BigQ: a NoSQL based framework to handle genomic variants in i2b2.
Q27015838Bioinformatics for precision medicine in oncology: principles and application to the SHIVA clinical trial
Q28602387Challenges to Implementation of Global Translational Collaboration Platforms
Q64089275Data and knowledge management in translational research: implementation of the eTRIKS platform for the IMI OncoTrack consortium
Q47161228Development of the Precision Link Biobank at Boston Children's Hospital: Challenges and Opportunities
Q35732643Diagnostic biases in translational bioinformatics
Q37333719Distributed Cognition and Process Management Enabling Individualized Translational Research: The NIH Undiagnosed Diseases Program Experience
Q38379915Embracing an integromic approach to tissue biomarker research in cancer: Perspectives and lessons learned.
Q36120489Exploring and visualizing multidimensional data in translational research platforms.
Q41606047Extending XNAT Platform with an Incremental Semantic Framework
Q58700238Fractalis: a scalable open-source service for platform-independent interactive visual analysis of biomedical data
Q27319225G-DOC Plus - an integrative bioinformatics platform for precision medicine.
Q28596393Integrating Heterogeneous Biomedical Data for Cancer Research: the CARPEM infrastructure
Q31116335Integration and Visualization of Translational Medicine Data for Better Understanding of Human Diseases
Q33675239Interdisciplinary approach towards a systems medicine toolbox using the example of inflammatory diseases
Q38898567OpenGeneMed: a portable, flexible and customizable informatics hub for the coordination of next-generation sequencing studies in support of precision medicine trials
Q30491200Orchestrating differential data access for translational research: a pilot implementation
Q37742362Partnering with patients in translational oncology research: ethical approach
Q33602117PathOS: a decision support system for reporting high throughput sequencing of cancers in clinical diagnostic laboratories
Q92602553PlatformTM, a standards-based data custodianship platform for translational medicine research
Q36870228Public Health Platforms: An Emerging Informatics Approach to Health Professional Learning and Development
Q31032191Rise of Microbial Culturomics: Noncontiguous Finished Genome Sequence and Description of Beduini massiliensis gen. nov., sp. nov.
Q36365430Secondary Use and Analysis of Big Data Collected for Patient Care. Contribution from the IMIA Working Group on Data Mining and Big Data Analytics
Q92103052The European medical information framework: A novel ecosystem for sharing healthcare data across Europe
Q47877688The Use of Translational Research Platforms in Clinical and Biomedical Data Exploration
Q38796888The Virtuous Circles of Clinical Information Systems: a Modern Utopia
Q35912359Toward rapid learning in cancer treatment selection: An analytical engine for practice-based clinical data
Q47261242Usability and Suitability of the Omics-Integrating Analysis Platform tranSMART for Translational Research and Education.
Q48011386Visualizing omics and clinical data: Which challenges for dealing with their variety?
Q47962924mosaicQA - A General Approach to Facilitate Basic Data Quality Assurance for Epidemiological Research

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