Sigma: strain-level inference of genomes from metagenomic analysis for biosurveillance

scientific article

Sigma: strain-level inference of genomes from metagenomic analysis for biosurveillance is …
instance of (P31):
scholarly articleQ13442814

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P8978DBLP publication IDjournals/bioinformatics/AhnCP15
P356DOI10.1093/BIOINFORMATICS/BTU641
P8608Fatcat IDrelease_cstg25zfvvecnnzalfx4d4tmjm
P3181OpenCitations bibliographic resource ID1492072
P932PMC publication ID4287953
P698PubMed publication ID25266224
P5875ResearchGate publication ID266325320

P50authorTae-Hyuk AhnQ85650103
Chongle PanQ46162356
P2093author name stringJuanjuan Chai
P2860cites workMetagenomic microbial community profiling using unique clade-specific marker genesQ24599864
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The Sequence Alignment/Map format and SAMtoolsQ27860966
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DNA-DNA hybridization values and their relationship to whole-genome sequence similaritiesQ29617100
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Phylogenomic analysis of bacterial and archaeal sequences with AMPHORA2.Q30455097
Accurate genome relative abundance estimation based on shotgun metagenomic readsQ31043348
MetaSim: a sequencing simulator for genomics and metagenomicsQ33374533
Escherichia coli (STEC) serotype O104 outbreak causing haemolytic syndrome (HUS) in Germany and France.Q33396081
TACOA: taxonomic classification of environmental genomic fragments using a kernelized nearest neighbor approachQ33408370
Accurate and fast estimation of taxonomic profiles from metagenomic shotgun sequencesQ34046549
Performance comparison of benchtop high-throughput sequencing platformsQ34241334
Genomic comparison of Escherichia coli O104:H4 isolates from 2009 and 2011 reveals plasmid, and prophage heterogeneity, including shiga toxin encoding phage stx2Q34469643
Pathoscope: species identification and strain attribution with unassembled sequencing dataQ34811411
Metagenomic abundance estimation and diagnostic testing on species level.Q41431586
Metagenome fragment classification using N-mer frequency profilesQ41947344
Taxonomic metagenome sequence assignment with structured output modelsQ42790557
SOrt-ITEMS: Sequence orthology based approach for improved taxonomic estimation of metagenomic sequencesQ44883483
P275copyright licenseCreative Commons Attribution 4.0 InternationalQ20007257
P6216copyright statuscopyrightedQ50423863
P433issue2
P407language of work or nameEnglishQ1860
P921main subjectmetagenomicsQ903778
computational mathematicsQ1122491
P304page(s)170-177
P577publication date2014-09-29
P1433published inBioinformaticsQ4914910
P1476titleSigma: strain-level inference of genomes from metagenomic analysis for biosurveillance
P478volume31

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