review article | Q7318358 |
scholarly article | Q13442814 |
P2093 | author name string | James A Shapiro | |
P2860 | cites work | The giant Cafeteria roenbergensis virus that infects a widespread marine phagocytic protist is a new member of the fourth domain of Life | Q21003944 |
Initial sequencing and analysis of the human genome | Q21045365 | ||
Unexpected inheritance: multiple integrations of ancient bornavirus and ebolavirus/marburgvirus sequences in vertebrate genomes | Q21090501 | ||
Broad spectrum of mimiviridae virophage allows its isolation using a mimivirus reporter | Q21090761 | ||
Endogenous viral elements in animal genomes | Q21092431 | ||
Taming of the shrewd: novel eukaryotic genes from RNA viruses | Q21093236 | ||
The evolution of novel fungal genes from non-retroviral RNA viruses | Q21093237 | ||
Filoviruses are ancient and integrated into mammalian genomes | Q21093632 | ||
Lateral transfer of a lectin-like antifreeze protein gene in fishes | Q21144282 | ||
Continued colonization of the human genome by mitochondrial DNA | Q21146409 | ||
Studies on Transposable Elements in Yeast: I. ROAM Mutations Causing Increased Expression of Yeast Genes: Their Activation by Signals Directed toward Conjugation Functions and Their Formation by Insertion of Tyl Repetitive Elements | Q72902122 | ||
The origin and characterization of new nuclear genes originating from a cytoplasmic organellar genome | Q83253663 | ||
Independent and parallel lateral transfer of DNA transposons in tetrapod genomes | Q84548520 | ||
Families of transposable elements, population structure and the origin of species | Q21203760 | ||
Evolution of glyoxylate cycle enzymes in Metazoa: evidence of multiple horizontal transfer events and pseudogene formation | Q21203782 | ||
Horizontal transfer of expressed genes in a parasitic flowering plant | Q21266713 | ||
A horizontal gene transfer supported the evolution of an early metazoan biomineralization strategy | Q21284056 | ||
Lateral Gene Transfer and the Origins of Prokaryotic Groups | Q22065388 | ||
Sequences from Ancestral Single-Stranded DNA Viruses in Vertebrate Genomes: the Parvoviridae and Circoviridae Are More than 40 to 50 Million Years Old | Q22065439 | ||
Horizontal gene transfer in eukaryotic evolution | Q22122009 | ||
Algal genomes reveal evolutionary mosaicism and the fate of nucleomorphs | Q22122147 | ||
A high-resolution map of human evolutionary constraint using 29 mammals | Q22122167 | ||
The ring of life provides evidence for a genome fusion origin of eukaryotes | Q22122495 | ||
An envelope glycoprotein of the human endogenous retrovirus HERV-W is expressed in the human placenta and fuses cells expressing the type D mammalian retrovirus receptor | Q24524784 | ||
On the evolution of cells | Q24530769 | ||
Protein phylogenies and signature sequences: A reappraisal of evolutionary relationships among archaebacteria, eubacteria, and eukaryotes | Q24548562 | ||
A new biology for a new century | Q24561954 | ||
The yeast mating-type switching mechanism: a memoir | Q24605154 | ||
Multiplex genome engineering using CRISPR/Cas systems | Q24609428 | ||
Virophages, polintons, and transpovirons: a complex evolutionary network of diverse selfish genetic elements with different reproduction strategies | Q24616849 | ||
Horizontally transferred fungal carotenoid genes in the two-spotted spider mite Tetranychus urticae | Q24621559 | ||
A role for host-parasite interactions in the horizontal transfer of transposons across phyla | Q24627332 | ||
Transcriptomic evidence that longevity of acquired plastids in the photosynthetic slugs Elysia timida and Plakobranchus ocellatus does not entail lateral transfer of algal nuclear genes | Q24629190 | ||
Antibiotics and UV radiation induce competence for natural transformation in Legionella pneumophila | Q24629815 | ||
RNA-guided editing of bacterial genomes using CRISPR-Cas systems | Q24630389 | ||
Evolutionary maintenance of filovirus-like genes in bat genomes | Q24632851 | ||
Coevolution of retroelements and tandem zinc finger genes | Q24632903 | ||
Widespread endogenization of densoviruses and parvoviruses in animal and human genomes | Q24634921 | ||
Horizontal gene transfer among genomes: the complexity hypothesis | Q24651300 | ||
Endogenous non-retroviral RNA virus elements in mammalian genomes | Q24652160 | ||
Giant Marseillevirus highlights the role of amoebae as a melting pot in emergence of chimeric microorganisms | Q24652434 | ||
Diversity-generating retroelements | Q24656393 | ||
High-frequency gene transfer from the chloroplast genome to the nucleus | Q24678837 | ||
Molecular and cellular dissection of mating-type switching steps in Schizosaccharomyces pombe | Q33552321 | ||
RNA editing: a driving force for adaptive evolution? | Q33691024 | ||
Mechanisms of genome-wide hypermutation in stationary phase | Q33692333 | ||
Evidence of transfer by conjugation of type IV secretion system genes between Bartonella species and Rhizobium radiobacter in amoeba | Q33698051 | ||
Patterns of prokaryotic lateral gene transfers affecting parasitic microbial eukaryotes | Q33742087 | ||
A c-Myc regulatory subnetwork from human transposable element sequences. | Q33773609 | ||
Horizontal gene transfer of microbial cellulases into nematode genomes is associated with functional assimilation and gene turnover | Q33792611 | ||
Shufflons: multiple inversion systems and integrons | Q33847677 | ||
Archaebacterial DNA-dependent RNA polymerases testify to the evolution of the eukaryotic nuclear genome | Q33862709 | ||
Rewirable gene regulatory networks in the preimplantation embryonic development of three mammalian species | Q33881365 | ||
Genome-wide hypermutation in a subpopulation of stationary-phase cells underlies recombination-dependent adaptive mutation | Q33886793 | ||
Provirophages and transpovirons as the diverse mobilome of giant viruses | Q34033995 | ||
Transcription in archaea: similarity to that in eucarya | Q34058138 | ||
Identification of widespread ultra-edited human RNAs. | Q34058176 | ||
Lateral transfer of genes from fungi underlies carotenoid production in aphids | Q34112951 | ||
Multiple lateral gene transfers and duplications have promoted plant parasitism ability in nematodes | Q34140447 | ||
Horizontal gene transfer between bacteria and animals | Q34165647 | ||
Direct measurement of the transfer rate of chloroplast DNA into the nucleus | Q34178413 | ||
Archaebacteria | Q34273227 | ||
Mammalian NUMT insertion is non-random | Q34285894 | ||
Widespread horizontal gene transfer from double-stranded RNA viruses to eukaryotic nuclear genomes | Q34296089 | ||
NUMTs in sequenced eukaryotic genomes. | Q34304830 | ||
Origin, evolution and genetic effects of nuclear insertions of organelle DNA. | Q34458460 | ||
Pack-Mutator-like transposable elements (Pack-MULEs) induce directional modification of genes through biased insertion and DNA acquisition | Q34534325 | ||
The gypsy insulator of Drosophila affects chromatin structure in a directional manner | Q34613880 | ||
Endogenous retrovirus drives hitherto unknown proapoptotic p63 isoforms in the male germ line of humans and great apes | Q34621360 | ||
Strategies for the discovery and engineering of enzymes for biocatalysis | Q34633129 | ||
Mimiviridae: clusters of orthologous genes, reconstruction of gene repertoire evolution and proposed expansion of the giant virus family | Q34655446 | ||
Endogenous retroviruses and neighboring genes are coordinately repressed by LSD1/KDM1A. | Q34691326 | ||
Directed networks reveal genomic barriers and DNA repair bypasses to lateral gene transfer among prokaryotes | Q34729654 | ||
Interactions of some common pathogenic bacteria with Acanthamoeba polyphaga. | Q34768857 | ||
Effects of retroviruses on host genome function. | Q34806936 | ||
Horizontally transferred genes in the genome of Pacific white shrimp, Litopenaeus vannamei | Q34893404 | ||
Protein coding potential of retroviruses and other transposable elements in vertebrate genomes | Q24791165 | ||
Serendipitous discovery of Wolbachia genomes in multiple Drosophila species | Q24797267 | ||
Positive selection of Iris, a retroviral envelope-derived host gene in Drosophila melanogaster | Q24814659 | ||
Retroviral elements and their hosts: insertional mutagenesis in the mouse germ line | Q25255710 | ||
Retroviruses and the placenta | Q26827477 | ||
Detection of novel insect flavivirus sequences integrated in Aedes albopictus (Diptera: Culicidae) in Northern Italy | Q27488954 | ||
Uprooting the tree of life | Q28138222 | ||
From pre-cells to Eukarya--a tale of two lipids | Q28218468 | ||
Repetitive elements may comprise over two-thirds of the human genome | Q28254709 | ||
Endogenous retrovirus long terminal repeats as ready-to-use mobile promoters: the case of primate beta3GAL-T5 | Q28268326 | ||
From ancestral infectious retroviruses to bona fide cellular genes: role of the captured syncytins in placentation | Q28268742 | ||
Evaluating hypotheses for the origin of eukaryotes | Q28280467 | ||
Adaptive eukaryote-to-eukaryote lateral gene transfer: stress-related genes of algal origin in the closest unicellular relatives of animals | Q28291417 | ||
Supertrees disentangle the chimerical origin of eukaryotic genomes | Q28302466 | ||
Epigenetic regulation of a murine retrotransposon by a dual histone modification mark | Q28473811 | ||
Endogenous RNA viruses of plants in insect genomes | Q28672681 | ||
Exceptionally high cumulative percentage of NUMTs originating from linear mitochondrial DNA molecules in the Hydra magnipapillata genome | Q28676997 | ||
Genesis and regulatory wiring of retroelement-derived domesticated genes: a phylogenomic perspective | Q28682334 | ||
Factors affecting the relative abundance of nuclear copies of mitochondrial DNA (numts) in hominoids | Q28710502 | ||
Multiple photosynthetic transitions, polyploidy, and lateral gene transfer in the grass subtribe Neurachninae | Q28714729 | ||
Genetic innovation in vertebrates: gypsy integrase genes and other genes derived from transposable elements | Q28728307 | ||
Horizontal transfer and death of a fungal secondary metabolic gene cluster | Q28730775 | ||
Non coding RNAs and viruses in the framework of the phylogeny of the genes, epigenesis and heredity | Q28732315 | ||
Nuclear mitochondrial DNA activates replication in Saccharomyces cerevisiae | Q28742121 | ||
A comparative approach shows differences in patterns of numt insertion during hominoid evolution | Q28742402 | ||
Widespread endogenization of genome sequences of non-retroviral RNA viruses into plant genomes | Q28742628 | ||
Gypsy and the birth of the SCAN domain | Q28743095 | ||
Non-retroviral fossils in vertebrate genomes | Q28743301 | ||
Widespread horizontal gene transfer from circular single-stranded DNA viruses to eukaryotic genomes | Q28743546 | ||
Paleovirology - ghosts and gifts of viruses past | Q28744083 | ||
Discovery and characterization of mammalian endogenous parvoviruses | Q28744102 | ||
Gorgeous mosaic of mitochondrial genes created by horizontal transfer and gene conversion | Q28744147 | ||
Pervasive Horizontal Transfer of Rolling-Circle Transposons among Animals | Q28744436 | ||
Molecular poltergeists: mitochondrial DNA copies (numts) in sequenced nuclear genomes | Q28748935 | ||
Aphids acquired symbiotic genes via lateral gene transfer | Q28754921 | ||
Wolbachia genome integrated in an insect chromosome: evolution and fate of laterally transferred endosymbiont genes | Q28755929 | ||
Transposable elements and the evolution of regulatory networks | Q28756349 | ||
Repeated horizontal transfer of a DNA transposon in mammals and other tetrapods | Q28756606 | ||
A Four-Partner Plant–Virus Interaction: Enemies Can Also Come from Within | Q29039209 | ||
Gene duplication and exon shuffling by helitron-like transposons generate intraspecies diversity in maize | Q29300755 | ||
Butterfly genome reveals promiscuous exchange of mimicry adaptations among species | Q29391922 | ||
ZFN, TALEN, and CRISPR/Cas-based methods for genome engineering | Q29615505 | ||
Horizontal gene transfer in prokaryotes: quantification and classification | Q29616017 | ||
Eukaryotic evolution, changes and challenges | Q29616065 | ||
Widespread lateral gene transfer from intracellular bacteria to multicellular eukaryotes | Q29618146 | ||
Endosymbiotic gene transfer: organelle genomes forge eukaryotic chromosomes | Q29618487 | ||
Endogenous viruses: insights into viral evolution and impact on host biology | Q29619890 | ||
Exon shuffling by L1 retrotransposition | Q29622913 | ||
Biological diversity of prokaryotic type IV secretion systems. | Q30927042 | ||
Directed evolution of proteins by exon shuffling | Q30988711 | ||
The role of lineage-specific gene family expansion in the evolution of eukaryotes | Q31093428 | ||
Repetitive element-mediated recombination as a mechanism for new gene origination in Drosophila | Q33315562 | ||
Numt-mediated double-strand break repair mitigates deletions during primate genome evolution | Q33379097 | ||
Phylogenetic evidence for extensive lateral acquisition of cellular genes by Nucleocytoplasmic large DNA viruses | Q33387394 | ||
Gene transfer and diversification of microbial eukaryotes | Q33477944 | ||
Evolution of spliceosomal introns following endosymbiotic gene transfer | Q33533635 | ||
Lineage-specific transcription factors and the evolution of gene regulatory networks | Q34987289 | ||
Endogenous retroviral LTRs as promoters for human genes: a critical assessment. | Q34990656 | ||
Phylogenetic origin of the chloroplast and prokaryotic nature of its ribosomal RNA | Q35082233 | ||
Evolution of a second gene for beta-galactosidase in Escherichia coli | Q35106535 | ||
Gene transfer from organelles to the nucleus: frequent and in big chunks | Q35170156 | ||
Dynamic interactions between transposable elements and their hosts | Q35333511 | ||
Transposable elements donate lineage-specific regulatory sequences to host genomes | Q35647618 | ||
Position effect and related phenomena | Q35653449 | ||
Horizontal transfer of chloroplast genomes between plant species | Q35786885 | ||
Evolution of plant parasitism among nematodes | Q35850393 | ||
Endosybiotic evolution in action: Real-time observations of chloroplast to nucleus gene transfer | Q35852711 | ||
Phylogenetic reconstruction and lateral gene transfer. | Q35874508 | ||
Mating-type genes and MAT switching in Saccharomyces cerevisiae | Q35917385 | ||
Lateral gene transfers have polished animal genomes: lessons from nematodes | Q36159517 | ||
Nuclear genome diversity in somatic cells is accelerated by environmental stress | Q36164081 | ||
Species-specific endogenous retroviruses shape the transcriptional network of the human tumor suppressor protein p53. | Q36276913 | ||
Determinants of transcription initiation by archaeal RNA polymerase | Q36297017 | ||
Origin of mutations under selection: the adaptive mutation controversy. | Q36500577 | ||
Latent regulatory potential of human-specific repetitive elements | Q36575292 | ||
Principles and concepts of DNA replication in bacteria, archaea, and eukarya | Q36938523 | ||
Insulator and Ovo proteins determine the frequency and specificity of insertion of the gypsy retrotransposon in Drosophila melanogaster | Q36969573 | ||
Cytoplasmic organelle DNA preferentially inserts into open chromatin. | Q36974632 | ||
Highly efficient targeted mutagenesis of Drosophila with the CRISPR/Cas9 system. | Q37022952 | ||
Horizontal transfer of transposable elements in plants | Q37079593 | ||
Great exaptations. | Q37086188 | ||
Efficient multiplex biallelic zebrafish genome editing using a CRISPR nuclease system | Q37117695 | ||
Highly efficient genome modifications mediated by CRISPR/Cas9 in Drosophila. | Q37142686 | ||
Reconstructing evolution: gene transfer from plastids to the nucleus | Q37163180 | ||
Algal endosymbionts as vectors of horizontal gene transfer in photosynthetic eukaryotes | Q37182339 | ||
Widespread evidence for horizontal transfer of transposable elements across Drosophila genomes | Q37207183 | ||
Origination of chimeric genes through DNA-level recombination | Q37254907 | ||
Genomic DNA double-strand breaks are targets for hepadnaviral DNA integration | Q37285762 | ||
DNA transfer from organelles to the nucleus: the idiosyncratic genetics of endosymbiosis | Q37327562 | ||
Role of horizontal gene transfer in the evolution of plant parasitism among nematodes. | Q37409345 | ||
Insertion sequence IS2 associated with int-constitutive mutants of bacteriophage lambda | Q40866995 | ||
Loss of RNase R induces competence development in Legionella pneumophila. | Q41365469 | ||
Transposition into replicating DNA occurs through interaction with the processivity factor | Q41893751 | ||
Evolutionary capture of viral and plasmid DNA by yeast nuclear chromosomes | Q41917885 | ||
Retrogenes moved out of the z chromosome in the silkworm | Q42013385 | ||
Acanthamoeba castellanii of the T4 genotype is a potential environmental host for Enterobacter aerogenes and Aeromonas hydrophila. | Q42155774 | ||
Plastid DNA in the nucleus: new genes for old. | Q42250937 | ||
Nuclear insertions of organellar DNA can create novel patches of functional exon sequences | Q42636290 | ||
Pack-MULE transposable elements mediate gene evolution in plants | Q42637232 | ||
Extreme RNA editing in coding islands and abundant microsatellites in repeat sequences of Selaginella moellendorffii mitochondria: the root of frequent plant mtDNA recombination in early tracheophytes | Q42641744 | ||
Origin of eukaryotic cell nuclei by symbiosis of Archaea in Bacteria supported by the newly clarified origin of functional genes | Q42688379 | ||
Generation and evolutionary fate of insertions of organelle DNA in the nuclear genomes of flowering plants | Q42716507 | ||
Bs1, a new chimeric gene formed by retrotransposon-mediated exon shuffling in maize | Q43057973 | ||
Modes of acquisition of Wolbachia: horizontal transfer, hybrid introgression, and codivergence in the Nasonia species complex. | Q43471730 | ||
RNA-guided genome editing in plants using a CRISPR-Cas system. | Q43649257 | ||
Reciprocal sequence exchange between non-retro viruses and hosts leading to the appearance of new host phenotypes | Q44139655 | ||
Transposition and exon shuffling by group II intron RNA molecules in pieces | Q44733602 | ||
Lateral transfer and recompartmentalization of Calvin cycle enzymes of plants and algae | Q44870104 | ||
Plant Parasitic Nematodes: Habitats, Hormones, and Horizontally-Acquired Genes. | Q44874178 | ||
Transposable elements have rewired the core regulatory network of human embryonic stem cells | Q45103037 | ||
CGIN1: a retroviral contribution to mammalian genomes | Q45351093 | ||
Occurrence of a DNA sequence of a non-retro RNA virus in a host plant genome and its expression: evidence for recombination between viral and host RNAs | Q45517916 | ||
Horizontal gene transfer accelerates genome innovation and evolution. | Q45961682 | ||
Extensive structural renovation of retrogenes in the evolution of the Populus genome | Q46102354 | ||
Pack-MULEs: theft on a massive scale | Q46382284 | ||
Endosymbiotic evolution: the totalitarian nucleus is foiled again | Q46990468 | ||
Widespread horizontal transfer of mitochondrial genes in flowering plants | Q47386253 | ||
Independent origins and horizontal transfer of bacterial symbionts of aphids | Q47634337 | ||
Experimental reconstruction of functional gene transfer from the tobacco plastid genome to the nucleus | Q48083644 | ||
Retroviral promoters in the human genome | Q48339906 | ||
Insertion of IS2 creates a novel ampC promoter in Escherichia coli | Q48399769 | ||
Retrotransposons regulate host genes in mouse oocytes and preimplantation embryos. | Q48810940 | ||
Possible horizontal transfer of Drosophila genes by the mite Proctolaelaps regalis. | Q52444407 | ||
Trans mobilization of genomic DNA as a mechanism for retrotransposon-mediated exon shuffling. | Q55036563 | ||
Exaptation—a Missing Term in the Science of Form | Q56611312 | ||
Computational characterization of multiple Gag-like human proteins | Q56918141 | ||
Mitochondrial DNA repairs double-strand breaks in yeast chromosomes | Q57009046 | ||
The Genomic Sequence of the Accidental Pathogen Legionella pneumophila | Q57265781 | ||
Algae's complex origins | Q58060486 | ||
The early evolution of lipid membranes and the three domains of life | Q60134656 | ||
Endosymbionts and mitochondrial origins | Q67044446 | ||
Acquisition of new metabolic activities by microbial populations | Q72665622 | ||
Observations on the formation of clones containing araB-lacZ cistron fusions | Q72815889 | ||
Mating signals control expression of mutations resulting from insertion of a transposable repetitive element adjacent to diverse yeast genes | Q72875223 | ||
Exon-trapping mediated by the human retrotransposon SVA. | Q37417310 | ||
5'-Transducing SVA retrotransposon groups spread efficiently throughout the human genome | Q37417316 | ||
Lateral gene transfer, lineage-specific gene expansion and the evolution of Nucleo Cytoplasmic Large DNA viruses | Q37490330 | ||
Facultative symbionts in aphids and the horizontal transfer of ecologically important traits | Q37591527 | ||
The Warburg effect and mitochondrial stability in cancer cells | Q37648867 | ||
Proteome diversification by adenosine to inosine RNA editing | Q37702079 | ||
Gene exchange and the origin of giant viruses | Q37765426 | ||
Pathogen–host interactions in Dictyostelium, Legionella, Mycobacterium and other pathogens | Q37812420 | ||
Translation initiation in Archaea: conserved and domain-specific features. | Q37832254 | ||
The professional phagocyte Dictyostelium discoideum as a model host for bacterial pathogens | Q37848852 | ||
Horizontal gene transfer in nematodes: a catalyst for plant parasitism? | Q37871595 | ||
Exonization of transposed elements: A challenge and opportunity for evolution | Q37905257 | ||
Role of intercompartmental DNA transfer in producing genetic diversity. | Q37948191 | ||
The evolution of endogenous viral elements | Q37948275 | ||
Rapid progress of DNA replication studies in Archaea, the third domain of life | Q38014378 | ||
Horizontal transposon transfer in eukarya: detection, bias, and perspectives | Q38026538 | ||
Evolutionary implications of horizontal gene transfer | Q38039144 | ||
The Warburg effect: insights from the past decade | Q38060406 | ||
How life changes itself: the Read-Write (RW) genome | Q38123302 | ||
Route of NCLDV evolution: the genomic accordion | Q38125033 | ||
Jumping the fine LINE between species: horizontal transfer of transposable elements in animals catalyses genome evolution | Q38134056 | ||
Microvesicles and intercellular communication in the context of parasitism. | Q38137085 | ||
How repeated retroelements format genome function | Q38487016 | ||
Escape of DNA from mitochondria to the nucleus in Saccharomyces cerevisiae | Q38580908 | ||
Red and problematic green phylogenetic signals among thousands of nuclear genes from the photosynthetic and apicomplexa-related Chromera velia | Q38895215 | ||
Increased persistence of Salmonella enterica serovar Typhi in the presence of Acanthamoeba castellanii | Q38957557 | ||
Evidence for lateral transfer of genes encoding ferredoxins, nitroreductases, NADH oxidase, and alcohol dehydrogenase 3 from anaerobic prokaryotes to Giardia lamblia and Entamoeba histolytica | Q39618693 | ||
DNA double-strand breaks, potential targets for HBV integration | Q39691764 | ||
Recombination of retrotransposon and exogenous RNA virus results in nonretroviral cDNA integration | Q39893973 | ||
Episome-mediated transfer of drug resistance in Enterobacteriaceae. III. Transduotion of resistance factors. | Q40258893 | ||
Sequences of flavivirus-related RNA viruses persist in DNA form integrated in the genome of Aedes spp. mosquitoes | Q40541480 | ||
Horizontal gene transfer: evidence and possible consequences | Q40613985 | ||
Evolutionarily mobile modules in proteins. | Q40777868 | ||
P275 | copyright license | Creative Commons Attribution-NonCommercial 3.0 Unported | Q18810331 |
P433 | issue | 3 | |
P407 | language of work or name | English | Q1860 |
P921 | main subject | cell biology | Q7141 |
DNA | Q7430 | ||
P304 | page(s) | 186-96 | |
P577 | publication date | 2013-12-20 | |
2014-01-01 | |||
P1433 | published in | RNA Biology | Q7277167 |
P1476 | title | Constraint and opportunity in genome innovation | |
P478 | volume | 11 |
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