Maximum expected accuracy structural neighbors of an RNA secondary structure

scientific article (publication date: 12 April 2012)

Maximum expected accuracy structural neighbors of an RNA secondary structure is …
instance of (P31):
scholarly articleQ13442814

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P8978DBLP publication IDjournals/bmcbi/CloteLL12
P6179Dimensions Publication ID1018028408
P356DOI10.1186/1471-2105-13-S5-S6
P3181OpenCitations bibliographic resource ID3276093
P932PMC publication ID3358666
P698PubMed publication ID22537010
P5875ResearchGate publication ID224868959

P2093author name stringPeter Clote
Feng Lou
William A Lorenz
P2860cites workComplete probabilistic analysis of RNA shapesQ21093244
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Structural basis for discriminative regulation of gene expression by adenine- and guanine-sensing mRNAsQ28299238
On finding all suboptimal foldings of an RNA moleculeQ29547627
Thermodynamic parameters for an expanded nearest-neighbor model for formation of RNA duplexes with Watson-Crick base pairsQ29617637
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Programmed cell death by hok/sok of plasmid R1: processing at the hok mRNA 3'-end triggers structural rearrangements that allow translation and antisense RNA bindingQ34446144
Boltzmann probability of RNA structural neighbors and riboswitch detectionQ34638165
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Computational identification of riboswitches based on RNA conserved functional sequences and conformationsQ34982434
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Improved RNA secondary structure prediction by maximizing expected pair accuracyQ37344489
A stress-responsive RNA switch regulates VEGFA expression.Q40154687
Second eigenvalue of the Laplacian matrix for predicting RNA conformational switch by mutationQ40528893
Riboswitch finder--a tool for identification of riboswitch RNAsQ41010434
A conformational switch at the 3' end of a plant virus RNA regulates viral replication.Q42680609
Formation of metastable RNA structures by sequential folding during transcription: time-resolved structural analysis of potato spindle tuber viroid (-)-stranded RNA by temperature-gradient gel electrophoresisQ43206426
Alignments of RNA structuresQ46445602
Robust prediction of consensus secondary structures using averaged base pairing probability matricesQ48420017
P275copyright licenseCreative Commons Attribution 2.0 GenericQ19125117
P6216copyright statuscopyrightedQ50423863
P433issueSuppl 5
P407language of work or nameEnglishQ1860
P304page(s)S6
P577publication date2012-04-12
P1433published inBMC BioinformaticsQ4835939
P1476titleMaximum expected accuracy structural neighbors of an RNA secondary structure
P478volume13 Suppl 5

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cites work (P2860)
Q52674239Capturing alternative secondary structures of RNA by decomposition of base-pairing probabilities.
Q37296803Changes in the Plasticity of HIV-1 Nef RNA during the Evolution of the North American Epidemic
Q37628326Computing the probability of RNA hairpin and multiloop formation
Q35876089Evolution of genes neighborhood within reconciled phylogenies: an ensemble approach
Q64966794Structural prediction of RNA switches using conditional base-pair probabilities.
Q28710262Using the fast fourier transform to accelerate the computational search for RNA conformational switches

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