| scholarly article | Q13442814 |
| P50 | author | Ruth Nussinov | Q7383152 |
| P2093 | author name string | A B Jacobson | |
| P2860 | cites work | Improved Estimation of Secondary Structure in Ribonucleic Acids | Q29616525 |
| Nucleotide sequence and secondary structure of potato spindle tuber viroid | Q34055713 | ||
| Estimation of Secondary Structure in Ribonucleic Acids | Q34223410 | ||
| Method for predicting RNA secondary structure | Q35080300 | ||
| Prediction of RNA Secondary Structure | Q37490778 | ||
| Stability of ribonucleic acid double-stranded helices | Q38361108 | ||
| Free energy of imperfect nucleic acid helices. II. Small hairpin loops | Q38361988 | ||
| Computer method for predicting the secondary structure of single-stranded RNA | Q39625189 | ||
| Free energy of imperfect nucleic acid helices. 3. Small internal loops resulting from mismatches. | Q54098837 | ||
| Studies on the secondary structure of single-stranded RNA from the bacteriophage MS2. II Analysis of the RNase IV cleavage products | Q67044383 | ||
| P433 | issue | 11 | |
| P407 | language of work or name | English | Q1860 |
| P304 | page(s) | 6309-13 | |
| P577 | publication date | 1980-11-01 | |
| P1433 | published in | Proceedings of the National Academy of Sciences of the United States of America | Q1146531 |
| P1476 | title | Fast algorithm for predicting the secondary structure of single-stranded RNA | |
| P478 | volume | 77 |
| Q30387020 | 3D RNA and Functional Interactions from Evolutionary Couplings |
| Q52082927 | A Boltzmann filter improves the prediction of RNA folding pathways in a massively parallel genetic algorithm. |
| Q57221100 | A Combinatorial Framework for Designing (Pseudoknotted) RNA Algorithms |
| Q33695729 | A Review on Recent Computational Methods for Predicting Noncoding RNAs. |
| Q35763781 | A comparison of optimal and suboptimal RNA secondary structures predicted by free energy minimization with structures determined by phylogenetic comparison |
| Q39086567 | A comprehensive benchmark of RNA-RNA interaction prediction tools for all domains of life. |
| Q24623194 | A computer program for choosing optimal oligonucleotides for filter hybridization, sequencing and in vitro amplification of DNA |
| Q42151130 | A domain-based model for predicting large and complex pseudoknotted structures |
| Q36087904 | A dynamic programming algorithm for finding alternative RNA secondary structures |
| Q51653515 | A kinetic model of RNA folding |
| Q40451249 | A new method to find a set of energetically optimal RNA secondary structures. |
| Q24624606 | A new principle of RNA folding based on pseudoknotting |
| Q64976473 | A pipeline for computational design of novel RNA-like topologies. |
| Q42048719 | A simple, practical and complete O(n3/log n)-time algorithm for RNA folding using the Four-Russians speedup |
| Q40492376 | A statistical test for comparing several nucleotide sequences |
| Q24811180 | A thermodynamic approach to designing structure-free combinatorial DNA word sets. |
| Q37002986 | AccessFold: predicting RNA-RNA interactions with consideration for competing self-structure |
| Q34975932 | Advances in RNA structure prediction from sequence: new tools for generating hypotheses about viral RNA structure-function relationships |
| Q56267141 | Algebraic Dynamic Programming on Trees |
| Q57221107 | An Unbiased Adaptive Sampling Algorithm for the Exploration of RNA Mutational Landscapes under Evolutionary Pressure |
| Q35532928 | An accelerated algorithm for calculating the secondary structure of single stranded RNAs |
| Q27486087 | An efficient method for the prediction of deleterious multiple-point mutations in the secondary structure of RNAs using suboptimal folding solutions |
| Q40559251 | An efficient string matching algorithm with k differences for nucleotide and amino acid sequences |
| Q38581456 | An energy model that predicts the correct folding of both the tRNA and the 5S RNA molecules |
| Q92718153 | An extended dual graph library and partitioning algorithm applicable to pseudoknotted RNA structures |
| Q41864941 | An improved Four-Russians method and sparsified Four-Russians algorithm for RNA folding |
| Q35720316 | An interactive technique for the display of nucleic acid secondary structure |
| Q36962876 | Analysis and classification of RNA tertiary structures |
| Q92719201 | Are RNA networks scale-free? |
| Q35021490 | Asymptotic number of hairpins of saturated RNA secondary structures. |
| Q37283881 | Asymptotic structural properties of quasi-random saturated structures of RNA. |
| Q47629097 | Asymptotics of canonical and saturated RNA secondary structures |
| Q47621840 | Biomolecular coevolution and its applications: Going from structure prediction toward signaling, epistasis, and function. |
| Q40366609 | COFOLD: an RNA secondary structure prediction method that takes co-transcriptional folding into account |
| Q40998340 | Chemical and computer probing of RNA structure. |
| Q34883911 | Classification and assessment tools for structural motif discovery algorithms |
| Q41329375 | Coarse-grained prediction of RNA loop structures. |
| Q57220988 | Combinatorial RNA Design: Designability and Structure-Approximating Algorithm |
| Q57220929 | Combinatorial RNA Design: Designability and Structure-Approximating Algorithm in Watson–Crick and Nussinov–Jacobson Energy Models |
| Q47303793 | Combinatorics of Contacts in Protein Contact Maps |
| Q47930941 | Combinatorics of locally optimal RNA secondary structures |
| Q38674649 | Comparative and integrative analysis of RNA structural profiling data: current practices and emerging questions |
| Q27014185 | Computational analysis of noncoding RNAs |
| Q26852710 | Computational biology of RNA interactions |
| Q35533361 | Computer programs for the characterization of protein coding genes |
| Q33719310 | Computing folding pathways between RNA secondary structures |
| Q33813019 | Computing the partition function for kinetically trapped RNA secondary structures |
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| Q36586549 | Conformational Transitions in Viroids and Virusoids: Comparison of Results from Energy Minimization Algorithm and from Experimental Data |
| Q37639713 | De novo prediction of structured RNAs from genomic sequences |
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| Q51348511 | Determination of low-energy structures of a small RNA hairpin using Monte Carlo-based techniques. |
| Q34496256 | Direct-Coupling Analysis of nucleotide coevolution facilitates RNA secondary and tertiary structure prediction |
| Q39085941 | Discovering common stem-loop motifs in unaligned RNA sequences |
| Q34573559 | Distributions of beneficial fitness effects in RNA. |
| Q90465256 | Dual Graph Partitioning Highlights a Small Group of Pseudoknot-Containing RNA Submotifs |
| Q52700020 | Dynamics and interactions of viroids. |
| Q36415368 | Dynamics of intramolecular recognition: base-pairing in DNA/RNA near and far from equilibrium |
| Q47649313 | Effects of secondary structures in RNA on interlocking probabilities |
| Q27486436 | Efficient Algorithms for Probing the RNA Mutation Landscape |
| Q40492309 | Efficient algorithms for folding and comparing nucleic acid sequences |
| Q47322123 | Efficient approximations of RNA kinetics landscape using non-redundant sampling. |
| Q41847840 | Efficient edit distance with duplications and contractions. |
| Q51903866 | Efficient sampling of RNA secondary structures from the Boltzmann ensemble of low-energy: the boustrophedon method. |
| Q40466218 | Energy directed folding of RNA sequences. |
| Q35105853 | Energy parameters and novel algorithms for an extended nearest neighbor energy model of RNA |
| Q30501600 | Enhanced graphic matrix analysis of nucleic acid and protein sequences |
| Q35101983 | Enhancement of accuracy and efficiency for RNA secondary structure prediction by sequence segmentation and MapReduce |
| Q34331063 | Evaluating the effect of disturbed ensemble distributions on SCFG based statistical sampling of RNA secondary structures |
| Q48054062 | Evaluation of a sophisticated SCFG design for RNA secondary structure prediction |
| Q34425860 | Evolution in silico and in vitro: the RNA model |
| Q46543742 | Exact calculation of loop formation probability identifies folding motifs in RNA secondary structures |
| Q47972303 | Expected degree for RNA secondary structure networks |
| Q45030153 | Expected distance between terminal nucleotides of RNA secondary structures |
| Q59789891 | Extracting information from RNA SHAPE data: Kalman filtering approach |
| Q47565164 | F-RAG: Generating Atomic Coordinates from RNA Graphs by Fragment Assembly |
| Q38903368 | Faster algorithms for RNA-folding using the Four-Russians method |
| Q34635992 | Finding the most significant common sequence and structure motifs in a set of RNA sequences |
| Q74495396 | Folding rate dependence on the chain length of RNA-like heteropolymers |
| Q97520848 | Free energy-based model of CTCF-mediated chromatin looping in the human genome |
| Q33261002 | From bad to good: Fitness reversals and the ascent of deleterious mutations |
| Q28261562 | From consensus structure prediction to RNA gene finding |
| Q41967491 | From knotted to nested RNA structures: a variety of computational methods for pseudoknot removal |
| Q46749023 | Fuzzy kernel clustering of RNA secondary structure ensemble using a novel similarity metric |
| Q35532973 | Generating non-overlapping displays of nucleic acid secondary structure |
| Q44798429 | Generation of synthetic RNA-based thermosensors. |
| Q73501707 | Geometrical factor and physical reasons for its influence on the kinetic and thermodynamic properties of RNA-like heteropolymers |
| Q57887681 | Glassy Transition in a Disordered Model for the RNA Secondary Structure |
| Q41987599 | Homology modeling revealed more than 20,000 rRNA internal transcribed spacer 2 (ITS2) secondary structures |
| Q24646200 | IDT SciTools: a suite for analysis and design of nucleic acid oligomers |
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| Q44282033 | Identifying complete RNA structural ensembles including pseudoknots |
| Q37344489 | Improved RNA secondary structure prediction by maximizing expected pair accuracy |
| Q38871936 | In Silico Prediction of RNA Secondary Structure |
| Q53960380 | Intrinsic secondary structure of human TNFR-I mRNA influences the determination of gene expression by RT-PCR. |
| Q51903640 | Introduction to special issue on RNA. |
| Q34016882 | Inverse folding of RNA pseudoknot structures |
| Q92235080 | Inverse folding with RNA-As-Graphs produces a large pool of candidate sequences with target topologies |
| Q24530528 | Kinefold web server for RNA/DNA folding path and structure prediction including pseudoknots and knots |
| Q97542184 | LinearPartition: linear-time approximation of RNA folding partition function and base-pairing probabilities |
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| Q52447532 | Modeling RNA secondary structures I. Mathematical structural model for predicting RNA secondary structures |
| Q28608536 | Network Properties of the Ensemble of RNA Structures |
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| Q36337874 | Nuclear Magnetic Resonance-Assisted Prediction of Secondary Structure for RNA: Incorporation of Direction-Dependent Chemical Shift Constraints |
| Q36315590 | Nucleotide sequence of the ilvB promoter-regulatory region: a biosynthetic operon controlled by attenuation and cyclic AMP. |
| Q51793113 | On quantitative effects of RNA shape abstraction. |
| Q50421315 | PATTERNA: transcriptome-wide search for functional RNA elements via structural data signatures. |
| Q35680884 | Pattern recognition in nucleic acid sequences. II. An efficient method for finding locally stable secondary structures |
| Q51133973 | Phase transition in random planar diagrams and RNA-type matching. |
| Q96608179 | Plant isomiRs: origins, biogenesis, and biological functions |
| Q28143252 | Plasticity, evolvability, and modularity in RNA |
| Q47371033 | Practicality and time complexity of a sparsified RNA folding algorithm |
| Q52453333 | Predicting Common Foldings of Homologous RNAs |
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| Q31131985 | Predicting helical topologies in RNA junctions as tree graphs |
| Q37142084 | Predicting structures and stabilities for H-type pseudoknots with interhelix loops. |
| Q36945050 | Predicting the sizes of large RNA molecules. |
| Q34982371 | Prediction of alternative RNA secondary structures based on fluctuating thermodynamic parameters |
| Q51648298 | Prediction of sequentially optimal RNA secondary structures. |
| Q42326816 | RDNAnalyzer: A tool for DNA secondary structure prediction and sequence analysis |
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| Q38079554 | RNA dot plots: an image representation for RNA secondary structure analysis and manipulations |
| Q34362448 | RNA folding at elementary step resolution |
| Q47737296 | RNA folding kinetics using Monte Carlo and Gillespie algorithms. |
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| Q24541398 | RNA secondary structure prediction from sequence alignments using a network of k-nearest neighbor classifiers |
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| Q40569403 | Structure of viroid replicative intermediates: physico-chemical studies on SP6 transcripts of cloned oligomeric potato spindle tuber viroid |
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