| P2093 | author name string | Michael Gribskov | |
| | Aditi Gupta | |
| | Kejie Li | |
| | Reazur Rahman | |
| P2860 | cites work | Design, implementation and evaluation of a practical pseudoknot folding algorithm based on thermodynamics | Q21284292 |
| | RNA secondary structure prediction by centroids in a Boltzmann weighted ensemble | Q24537445 |
| | Gapped BLAST and PSI-BLAST: a new generation of protein database search programs | Q24545170 |
| | The Ribonuclease P Database | Q24548410 |
| | The tmRNA Website: invasion by an intron | Q24548453 |
| | Assembly of core helices and rapid tertiary folding of a small bacterial group I ribozyme | Q24550734 |
| | DotKnot: pseudoknot prediction using the probability dot plot under a refined energy model | Q24597768 |
| | Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information | Q24602467 |
| | Fast algorithm for predicting the secondary structure of single-stranded RNA | Q24609436 |
| | Tools for the automatic identification and classification of RNA base pairs | Q24672574 |
| | pknotsRG: RNA pseudoknot folding including near-optimal structures and sliding windows | Q24684593 |
| | The comparative RNA web (CRW) site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs | Q24802442 |
| | DINAMelt web server for nucleic acid melting prediction | Q24813639 |
| | Vienna RNA secondary structure server | Q28131816 |
| | The equilibrium partition function and base pair binding probabilities for RNA secondary structure | Q28261689 |
| | A dynamic programming algorithm for RNA structure prediction including pseudoknots | Q28295782 |
| | Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences | Q29547172 |
| | On finding all suboptimal foldings of an RNA molecule | Q29547627 |
| | Improved Estimation of Secondary Structure in Ribonucleic Acids | Q29616525 |
| | KnotSeeker: heuristic pseudoknot detection in long RNA sequences. | Q33322069 |
| | RNA STRAND: the RNA secondary structure and statistical analysis database | Q33359913 |
| | Improved free energy parameters for RNA pseudoknotted secondary structure prediction | Q33572952 |
| | RNA pseudoknot prediction in energy-based models | Q33927406 |
| | Prediction of RNA secondary structure by free energy minimization | Q33996026 |
| | RNA chaperones and the RNA folding problem | Q34294471 |
| | Structure of the human telomerase RNA pseudoknot reveals conserved tertiary interactions essential for function | Q34400229 |
| | An RNA pseudoknot as the molecular switch for translation of the repZ gene encoding the replication initiator of IncIalpha plasmid ColIb-P9. | Q34466018 |
| | UNAFold: software for nucleic acid folding and hybridization | Q34810481 |
| | Structural and functional aspects of RNA pseudoknots | Q35152169 |
| | High sensitivity RNA pseudoknot prediction | Q35646838 |
| | A guide to ions and RNA structure | Q35670060 |
| | The telomerase RNA pseudoknot is critical for the stable assembly of a catalytically active ribonucleoprotein | Q36377506 |
| | Predicting structures and stabilities for H-type pseudoknots with interhelix loops. | Q37142084 |
| | PseudoBase++: an extension of PseudoBase for easy searching, formatting and visualization of pseudoknots | Q37202736 |
| | The protein factors MBNL1 and U2AF65 bind alternative RNA structures to regulate splicing | Q37224275 |
| | The RNase P family | Q37593890 |
| | PseudoBase: a database with RNA pseudoknots | Q39541166 |
| | A ribosomal function is necessary for efficient splicing of the T4 phage thymidylate synthase intron in vivo | Q40444014 |
| | Functional analysis of the SRV-1 RNA frameshifting pseudoknot. | Q41352063 |
| | HotKnots: heuristic prediction of RNA secondary structures including pseudoknots. | Q42282191 |
| | Folding kinetics for the conformational switch between alternative RNA structures | Q42378414 |
| | Charge density of divalent metal cations determines RNA stability | Q42412663 |
| | Predicting RNA pseudoknot folding thermodynamics | Q42530587 |
| | The suboptimal structures find the optimal RNAs: homology search for bacterial non-coding RNAs using suboptimal RNA structures | Q42722504 |
| | Long-Range Structure in Ribonuclease P RNA | Q44659853 |
| | A partition function algorithm for nucleic acid secondary structure including pseudoknots | Q45235547 |
| | A characteristic bent conformation of RNA pseudoknots promotes -1 frameshifting during translation of retroviral RNA. | Q46427589 |
| | A mechanical explanation of RNA pseudoknot function in programmed ribosomal frameshifting | Q48547537 |
| | RNA multi-structure landscapes. A study based on temperature dependent partition functions. | Q52407559 |
| | Pattern Matching in RNA Structures | Q57088362 |
| P433 | issue | 2 | |
| P304 | page(s) | 187-199 | |
| P577 | publication date | 2012-02-01 | |
| P1433 | published in | RNA Biology | Q7277167 |
| P1476 | title | Identifying complete RNA structural ensembles including pseudoknots | |
| P478 | volume | 9 | |