Root system architecture: insights from Arabidopsis and cereal crops

scientific article (publication date: 5 June 2012)

Root system architecture: insights from Arabidopsis and cereal crops is …
instance of (P31):
scholarly articleQ13442814

External links are
P356DOI10.1098/RSTB.2011.0234
P3181OpenCitations bibliographic resource ID735977
P932PMC publication ID3321685
P698PubMed publication ID22527386
P5875ResearchGate publication ID224820293

P2093author name stringIve De Smet
Stephanie Smith
P2860cites workThe shikimate pathway as an entry to aromatic secondary metabolismQ24673312
An historical perspective from the Green Revolution to the gene revolutionQ26810036
Large-scale sequestration of atmospheric carbon via plant roots in natural and agricultural ecosystems: why and howQ26850157
Model-assisted integration of physiological and environmental constraints affecting the dynamic and spatial patterns of root water uptake from soilsQ27709696
The F-box protein TIR1 is an auxin receptorQ28253006
The herbicide sensitivity gene CHL1 of Arabidopsis encodes a nitrate-inducible nitrate transporterQ28267231
ARF7 and ARF19 regulate lateral root formation via direct activation of LBD/ASL genes in ArabidopsisQ79677907
Effect of soil acidity, soil strength and macropores on root growth and morphology of perennial grass species differing in acid-soil resistanceQ82378484
Food security: the challenge of feeding 9 billion peopleQ28271670
A gain-of-function mutation in IAA28 suppresses lateral root developmentQ28360367
High-throughput imaging and analysis of root system architecture in Brachypodium distachyon under differential nutrient availabilityQ28730704
Breeding crop plants with deep roots: their role in sustainable carbon, nutrient and water sequestrationQ28741243
The story of phosphorus: Global food security and food for thoughtQ29302951
Root system architecture: opportunities and constraints for genetic improvement of cropsQ31126504
An auxin-dependent distal organizer of pattern and polarity in the Arabidopsis rootQ33179270
Isolation, characterization, and pericycle-specific transcriptome analyses of the novel maize lateral and seminal root initiation mutant rum1.Q33224911
Root responses to soil physical conditions; growth dynamics from field to cell.Q33228144
Pericycle cell proliferation and lateral root initiation in Arabidopsis.Q33335211
Regulation of plant growth by cytokininQ33335831
Early primordium morphogenesis during lateral root initiation in Arabidopsis thalianaQ33336732
Peptides: new signalling molecules in plantsQ33336859
AUX1 promotes lateral root formation by facilitating indole-3-acetic acid distribution between sink and source tissues in the Arabidopsis seedlingQ33337026
The lateral organ boundaries gene defines a novel, plant-specific gene familyQ33337329
An abscisic acid-sensitive checkpoint in lateral root development of ArabidopsisQ33338079
Cytokinin-deficient transgenic Arabidopsis plants show multiple developmental alterations indicating opposite functions of cytokinins in the regulation of shoot and root meristem activity.Q33339328
The Arabidopsis thaliana ABSCISIC ACID-INSENSITIVE8 encodes a novel protein mediating abscisic acid and sugar responses essential for growthQ33339577
Lateral root initiation or the birth of a new meristemQ33342668
Auxin acts as a local morphogenetic trigger to specify lateral root founder cells.Q33345686
Receptor-like kinase ACR4 restricts formative cell divisions in the Arabidopsis root.Q33346198
High-throughput quantification of root growth using a novel image-analysis tool.Q33347233
Stem cells: The root of all cellsQ33347890
Auxin: a major regulator of organogenesisQ33348866
Root development-two meristems for the price of one?Q33349578
Defining the boundaries: structure and function of LOB domain proteinsQ33349953
Root elongation, water stress, and mechanical impedance: a review of limiting stresses and beneficial root tip traitsQ33350180
Physiological effects of the synthetic strigolactone analog GR24 on root system architecture in Arabidopsis: another belowground role for strigolactones?Q33350187
Peptide signaling in plant development.Q33351152
Peptides and receptors controlling root developmentQ33353404
Genetic approach towards the identification of auxin-cytokinin crosstalk components involved in root developmentQ33353407
Early development and gravitropic response of lateral roots in Arabidopsis thaliana.Q33353410
Phloem-associated auxin response maxima determine radial positioning of lateral roots in maizeQ33353413
Formation of lateral root meristems is a two-stage processQ33366837
The peri-cell-cycle in ArabidopsisQ43590675
Functional genomic analysis of the AUXIN RESPONSE FACTOR gene family members in Arabidopsis thaliana: unique and overlapping functions of ARF7 and ARF19.Q43817620
The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signalingQ44186680
Regulation of Arabidopsis SHY2/IAA3 protein turnoverQ44655471
Brassinosteroids interact with auxin to promote lateral root development in ArabidopsisQ44816978
Cytokinins play opposite roles in lateral root formation, and nematode and Rhizobial symbiosesQ44859370
ABA plays a central role in mediating the regulatory effects of nitrate on root branching in ArabidopsisQ45711372
Adventitious root formation in rice requires OsGNOM1 and is mediated by the OsPINs family.Q45957899
Experimental Studies on Lateral Root Formation in Radish Seedling Roots: II. Analysis of the Dose-Response to Exogenous AuxinQ46187985
Cell cycle progression in the pericycle is not sufficient for SOLITARY ROOT/IAA14-mediated lateral root initiation in Arabidopsis thalianaQ46769508
Cytokinins act directly on lateral root founder cells to inhibit root initiationQ46861417
CHL1 functions as a nitrate sensor in plants.Q48581674
Nitrate-regulated auxin transport by NRT1.1 defines a mechanism for nutrient sensing in plants.Q48694928
The roots of a new green revolution.Q50541031
Local NO3- or NH4+ supply modifies the root system architecture of Cedrus atlantica seedlings grown in a split-root device.Q51100558
A dual porosity model of nutrient uptake by root hairs.Q51541246
A dynamic model of nutrient uptake by root hairs.Q51764868
A gain-of-function mutation in OsIAA11 affects lateral root development in rice.Q51854171
Auxin triggers a genetic switch.Q51872546
Arabidopsis ALF4 encodes a nuclear-localized protein required for lateral root formation.Q52094831
Inhibition of auxin movement from the shoot into the root inhibits lateral root development in Arabidopsis.Q52181641
The X-factor: visualizing undisturbed root architecture in soils using X-ray computed tomography.Q53316006
Salt stress signals shape the plant root.Q53428174
Cooperative Action of SLR1 and SLR2 Is Required for Lateral Root-Specific Cell Elongation in MaizeQ56035320
Early post-embryonic root formation is specifically affected in the maize mutantlrt1Q56035321
Isolation and characterization of rtcs, a maize mutant deficient in the formation of nodal rootsQ56035323
AXR2 encodes a member of the Aux/IAA protein familyQ73907227
The efficiency of Arabidopsis thaliana (Brassicaceae) root hairs in phosphorus acquisitionQ74013685
Lateral root formation is blocked by a gain-of-function mutation in the SOLITARY-ROOT/IAA14 gene of ArabidopsisQ77683162
Genetic and genomic dissection of maize root development and architectureQ37373922
Domestication and crop physiology: roots of green-revolution wheatQ37380728
Root based approaches to improving nitrogen use efficiency in plantsQ37532619
Genetic control of root development in rice, the model cerealQ37691984
To what extent may changes in the root system architecture of Arabidopsis thaliana grown under contrasted homogenous nitrogen regimes be explained by changes in carbon supply? A modelling approachQ37733183
Root hair systems biologyQ37790046
New insights into the mechanism of development of Arabidopsis root hairs and trichomesQ37825703
Update on phosphorus nutrition in Proteaceae. Phosphorus nutrition of proteaceae in severely phosphorus-impoverished soils: are there lessons to be learned for future crops?Q37865978
Root phenes for enhanced soil exploration and phosphorus acquisition: tools for future cropsQ37879327
Strigolactones are regulators of root developmentQ37884530
Root developmental adaptation to phosphate starvation: better safe than sorryQ37891565
In silico analyses of pericycle cell populations reinforce their relation with associated vasculature in ArabidopsisQ38325911
Repression of early lateral root initiation events by transient water deficit in barley and maizeQ38886701
Root cortical aerenchyma enhances the growth of maize on soils with suboptimal availability of nitrogen, phosphorus, and potassium.Q39365233
Mapping of QTLs for lateral and axile root growth of tropical maize.Q39531852
Identification of drought tolerance determinants by genetic analysis of root response to drought stress and abscisic Acid.Q39608127
Can we improve heterosis for root growth of maize by selecting parental inbred lines with different temperature behaviour?Q39625774
Mild salinity stimulates a stress-induced morphogenic response in Arabidopsis thaliana rootsQ39633316
From lab to field, new approaches to phenotyping root system architectureQ39755667
Molecular interactions of ROOTLESS CONCERNING CROWN AND SEMINAL ROOTS, a LOB domain protein regulating shoot-borne root initiation in maize (Zea mays L.).Q41894061
Development of real-time radioisotope imaging systems for plant nutrient uptake studiesQ42156378
Functional genomic analysis of the AUXIN/INDOLE-3-ACETIC ACID gene family members in Arabidopsis thalianaQ42486369
Water supply and not nitrate concentration determines primary root growth in Arabidopsis.Q42490599
Multiple AUX/IAA-ARF modules regulate lateral root formation: the role of Arabidopsis SHY2/IAA3-mediated auxin signallingQ42553754
Imaging and analysis platform for automatic phenotyping and trait ranking of plant root systemsQ43182568
Cellular organisation of the Arabidopsis thaliana rootQ33367389
Organization and cell differentiation in lateral roots of Arabidopsis thalianaQ33367959
Input subsidies to improve smallholder maize productivity in Malawi: toward an african green revolutionQ33403549
Physical effects of soil drying on roots and crop growthQ33479435
3D reconstruction and dynamic modeling of root architecture in situ and its application to crop phosphorus researchQ33496987
Influence of inorganic nitrogen and pH on the elongation of maize seminal rootsQ33578504
More than taking the heat: crops and global changeQ33584722
Bimodular auxin response controls organogenesis in ArabidopsisQ33664497
Through form to function: root hair development and nutrient uptakeQ33832116
Ethylene inhibits lateral root development, increases IAA transport and expression of PIN3 and PIN7 auxin efflux carriersQ34201961
PHOSPHATE ACQUISITION.Q34304435
Armadillo-related proteins promote lateral root development in ArabidopsisQ34334851
Root gravitropism requires lateral root cap and epidermal cells for transport and response to a mobile auxin signal.Q34462224
Root Architecture and Plant ProductivityQ34527139
The occurrence of dauciform roots amongst Western Australian reeds, rushes and sedges, and the impact of phosphorus supply on dauciform-root development in Schoenus unispiculatus (Cyperaceae).Q34555246
The Arabidopsis F-box protein TIR1 is an auxin receptorQ34557948
The strigolactone storyQ34622203
Abscisic acid signaling in seeds and seedlings.Q34667500
Inhibition of shoot branching by new terpenoid plant hormonesQ34806117
Strigolactone inhibition of shoot branchingQ34806131
The Maize Genome Sequencing ProjectQ35025072
Dissecting Arabidopsis lateral root developmentQ35113425
The role of nutrient availability in regulating root architecture.Q35130155
Roles of Arabidopsis ATP/ADP isopentenyltransferases and tRNA isopentenyltransferases in cytokinin biosynthesis.Q35133935
The Arabidopsis NRT1.1 transporter participates in the signaling pathway triggering root colonization of nitrate-rich patchesQ35539868
From weeds to crops: genetic analysis of root development in cerealsQ35631963
Natural genetic variation of root system architecture from Arabidopsis to Brachypodium: towards adaptive valueQ35876454
Recovering the dynamics of root growth and development using novel image acquisition and analysis methodsQ35876464
Root structure and functioning for efficient acquisition of phosphorus: Matching morphological and physiological traitsQ36504447
A novel role for abscisic acid emerges from undergroundQ36557092
Auxin-mediated lateral root formation in higher plantsQ36714769
Conserved and diverse mechanisms in root developmentQ37002189
Ethylene regulates lateral root formation and auxin transport in Arabidopsis thalianaQ37082986
P433issue1595
P407language of work or nameEnglishQ1860
P304page(s)1441-52
P577publication date2012-06-05
P1433published inPhilosophical Transactions of the Royal Society BQ2153239
P1476titleRoot system architecture: insights from Arabidopsis and cereal crops
P478volume367

Reverse relations

cites work (P2860)
Q92151682A Foldable Chip Array for the Continuous Investigation of Seed Germination and the Subsequent Root Development of Seedlings
Q38543071A new insight into root responses to external cues: Paradigm shift in nutrient sensing
Q38828665A scanner system for high-resolution quantification of variation in root growth dynamics of Brassica rapa genotypes
Q38465990Activated expression of AtEDT1/HDG11 promotes lateral root formation in Arabidopsis mutant edt1 by upregulating jasmonate biosynthesis.
Q35591879Alanine aminotransferase variants conferring diverse NUE phenotypes in Arabidopsis thaliana
Q34141227An integrated method for quantifying root architecture of field-grown maize.
Q38153668Auxin and the integration of environmental signals into plant root development
Q90618311Backhoe-assisted monolith method for plant root phenotyping under upland conditions
Q38466391Both Free Indole-3-Acetic Acid and Photosynthetic Performance are Important Players in the Response of Medicago truncatula to Urea and Ammonium Nutrition Under Axenic Conditions
Q38241167Branching out in roots: uncovering form, function, and regulation
Q58602143Building the differences: a case for the ground tissue patterning in plants
Q38853852CEP5 and XIP1/CEPR1 regulate lateral root initiation in Arabidopsis.
Q35704051Cell Type-Specific Gene Expression Analyses by RNA Sequencing Reveal Local High Nitrate-Triggered Lateral Root Initiation in Shoot-Borne Roots of Maize by Modulating Auxin-Related Cell Cycle Regulation.
Q38881192Climate-smart soils
Q35182666Common genetic basis for canopy temperature depression under heat and drought stress associated with optimized root distribution in bread wheat
Q47294872Control of Endogenous Auxin Levels in Plant Root Development.
Q39037698DRO1 influences root system architecture in Arabidopsis and Prunus species
Q92072728Deciphering Root Architectural Traits Involved to Cope With Water Deficit in Oat
Q90026630Different knockout genotypes of OsIAA23 in rice using CRISPR/Cas9 generating different phenotypes
Q33916475Drought Stress Results in a Compartment-Specific Restructuring of the Rice Root-Associated Microbiomes
Q47708621Drought Stress and Root-Associated Bacterial Communities
Q39384085EARLY SENESCENCE1 Encodes a SCAR-LIKE PROTEIN2 That Affects Water Loss in Rice
Q97882236Effects of breeding history and crop management on the root architecture of wheat
Q39177961Enhancing auxin accumulation in maize root tips improves root growth and dwarfs plant height
Q39369221Evaluation of high yielding soybean germplasm under water limitation
Q26830217Form matters: morphological aspects of lateral root development
Q26796647Gene Networks Involved in Hormonal Control of Root Development in Arabidopsis thaliana: A Framework for Studying Its Disturbance by Metal Stress
Q38261862General mechanisms of drought response and their application in drought resistance improvement in plants
Q58899961Genetic variation for aerenchyma and other root anatomical traits in durum wheat (Triticum durum Desf.)
Q39391198Genome-Wide Association Mapping in the Global Diversity Set Reveals New QTL Controlling Root System and Related Shoot Variation in Barley
Q54282650Genome-wide transcriptomic comparison of cotton (Gossypium herbaceum) leaf and root under drought stress.
Q46248295Genomics of Metal Stress-Mediated Signalling and Plant Adaptive Responses in Reference to Phytohormones
Q37524663Genotype-environment interactions affecting preflowering physiological and morphological traits of Brassica rapa grown in two watering regimes
Q47232937Genotypic Variation in Nitrogen Utilization Efficiency of Oilseed Rape (Brassica napus) Under Contrasting N Supply in Pot and Field Experiments
Q33957501HDG11 upregulates cell-wall-loosening protein genes to promote root elongation in Arabidopsis
Q92072492HY5 Contributes to Light-Regulated Root System Architecture Under a Root-Covered Culture System
Q26853517Hypocotyl adventitious root organogenesis differs from lateral root development
Q64935560Hypoxia and the group VII ethylene response transcription factor HRE2 promote adventitious root elongation in Arabidopsis.
Q38959988Identifying seedling root architectural traits associated with yield and yield components in wheat
Q35743044Influence of rhizobacterial volatiles on the root system architecture and the production and allocation of biomass in the model grass Brachypodium distachyon (L.) P. Beauv.
Q38059224Involvement of auxin pathways in modulating root architecture during beneficial plant-microorganism interactions.
Q33355414Lateral root development in the maize (Zea mays) lateral rootless1 mutant.
Q37217498Localised ABA signalling mediates root growth plasticity
Q92404451Maize with fewer nodal roots allocates mass to more lateral and deep roots that improve nitrogen uptake and shoot growth
Q28680741Matching roots to their environment
Q38135407Message in a bottle: small signalling peptide outputs during growth and development.
Q91844873Metabolic regulation of the maize rhizobiome by benzoxazinoids
Q100307175Modeling root system growth around obstacles
Q42422380Modulation of Arabidopsis and monocot root architecture by CLAVATA3/EMBRYO SURROUNDING REGION 26 peptide
Q38530654NPKS uptake, sensing, and signaling and miRNAs in plant nutrient stress
Q47367607Natural variation of hormone levels in Arabidopsis roots and correlations with complex root architecture
Q28833177New insights to lateral rooting: Differential responses to heterogeneous nitrogen availability among maize root types
Q35876460New roots for agriculture: exploiting the root phenome
Q40517360Nicotiana Roots Recruit Rare Rhizosphere Taxa as Major Root-Inhabiting Microbes
Q34598784Nucleotide polymorphisms and haplotype diversity of RTCS gene in China elite maize inbred lines
Q33649442Omics and modelling approaches for understanding regulation of asymmetric cell divisions in arabidopsis and other angiosperm plants
Q49673046Optimization of Phenotyping Assays for the Model Monocot Setaria viridis
Q64908033OsSPL3, an SBP-Domain Protein, Regulates Crown Root Development in Rice.
Q33610645Overexpression of the protein phosphatase 2A regulatory subunit a gene ZmPP2AA1 improves low phosphate tolerance by remodeling the root system architecture of maize
Q92998656PUCHI regulates very long chain fatty acid biosynthesis during lateral root and callus formation
Q38241805Phenotypic plasticity of the maize root system in response to heterogeneous nitrogen availability
Q49784013Phenotyping field-state wheat root system architecture for root foraging traits in response to environmentĂ—management interactions
Q35531578Phenotyping pipeline reveals major seedling root growth QTL in hexaploid wheat.
Q64090823Plant growth-promoting activity of beta-propeller protein YxaL secreted from Bacillus velezensis strain GH1-13
Q50100824Potential Applications of Polyamines in Agriculture and Plant Biotechnology
Q41471404Quantifying rooting at depth in a wheat doubled haploid population with introgression from wild emmer
Q27302158RADIX: rhizoslide platform allowing high throughput digital image analysis of root system expansion
Q60915729RDWN6, a major quantitative trait locus positively enhances root system architecture under nitrogen deficiency in rice
Q43471327Recovering root system traits using image analysis exemplified by two-dimensional neutron radiography images of lupine.
Q38162406Regulation of root morphogenesis in arbuscular mycorrhizae: what role do fungal exudates, phosphate, sugars and hormones play in lateral root formation?
Q37622066Reshaping Plant Biology: Qualitative and Quantitative Descriptors for Plant Morphology
Q42742028Rhizoslides: paper-based growth system for non-destructive, high throughput phenotyping of root development by means of image analysis.
Q33363450Root Architecture Diversity and Meristem Dynamics in Different Populations of Arabidopsis thaliana
Q64067807Root Branching and Nutrient Efficiency: Status and Way Forward in Root and Tuber Crops
Q89880263Root Response to Drought Stress in Rice (Oryza sativa L.).
Q28074519Root System Architecture and Abiotic Stress Tolerance: Current Knowledge in Root and Tuber Crops
Q46256555Root and Rhizosphere Bacterial Phosphatase Activity Varies with Tree Species and Soil Phosphorus Availability in Puerto Rico Tropical Forest
Q37280880Root traits contributing to plant productivity under drought
Q90388737Root-specific expression of chickpea cytokinin oxidase/dehydrogenase 6 leads to enhanced root growth, drought tolerance and yield without compromising nodulation
Q36110934Root-type-specific plasticity in response to localized high nitrate supply in maize (Zea mays).
Q28070109Roots Withstanding their Environment: Exploiting Root System Architecture Responses to Abiotic Stress to Improve Crop Tolerance
Q37279476Sequential induction of auxin efflux and influx carriers regulates lateral root emergence
Q38038977Small signaling peptides in Arabidopsis development: how cells communicate over a short distance
Q35670533Soil Tillage Management Affects Maize Grain Yield by Regulating Spatial Distribution Coordination of Roots, Soil Moisture and Nitrogen Status
Q90029019Soil compaction and the architectural plasticity of root systems
Q38662299Soil-on-a-Chip: microfluidic platforms for environmental organismal studies
Q47709249Sorghum root-system classification in contrasting P environments reveals three main rooting types and root-architecture-related marker-trait associations.
Q52350973Stress Inducible Overexpression of AtHDG11 Leads to Improved Drought and Salt Stress Tolerance in Peanut (Arachis hypogaea L.).
Q33358452Sulfur nutrient availability regulates root elongation by affecting root indole-3-acetic acid levels and the stem cell niche
Q33365579Synergistic action of auxin and cytokinin mediates aluminum-induced root growth inhibition in Arabidopsis.
Q64065575Temporal changes in cell division rate and genotoxic stress tolerance in quiescent center cells of Arabidopsis primary root apical meristem
Q43110908The ABA receptor PYL8 promotes lateral root growth by enhancing MYB77-dependent transcription of auxin-responsive genes.
Q33362116The Arabidopsis thaliana CLAVATA3/EMBRYO-SURROUNDING REGION 26 (CLE26) peptide is able to alter root architecture of Solanum lycopersicum and Brassica napus
Q59136351The Role of Promoter-Associated Histone Acetylation of () and () Genes in Heat-Induced Lateral Root Primordium Inhibition in Maize
Q34049607The role of auxin transporters in monocots development
Q35123695Transcriptome profiling of root microRNAs reveals novel insights into taproot thickening in radish (Raphanus sativus L.).
Q36411544Uncovering the contribution of epigenetics to plant phenotypic variation in Mediterranean ecosystems.

Search more.