Application of the protein semisynthesis strategy to the generation of modified chromatin

scientific article

Application of the protein semisynthesis strategy to the generation of modified chromatin is …
instance of (P31):
review articleQ7318358
scholarly articleQ13442814

External links are
P356DOI10.1146/ANNUREV-BIOCHEM-060614-034429
P3181OpenCitations bibliographic resource ID3575671
P932PMC publication ID5011971
P698PubMed publication ID25784050

P2093author name stringMatthew Holt
Tom Muir
P2860cites workA direct method for site-specific protein acetylationQ84953161
Biochemical profiling of histone binding selectivity of the yeast bromodomain familyQ21142665
Crystal structure of the nucleosome core particle at 2.8 A resolutionQ22122355
Recognition of a mononucleosomal histone modification pattern by BPTF via multivalent interactionsQ24303887
Histone H2A deubiquitinase activity of the Polycomb repressive complex PR-DUBQ24309403
SET1 and p300 act synergistically, through coupled histone modifications, in transcriptional activation by p53Q24310032
H3R42me2a is a histone modification with positive transcriptional effectsQ24319807
RAD6-Mediated transcription-coupled H2B ubiquitylation directly stimulates H3K4 methylation in human cellsQ24321262
Identification of 67 histone marks and histone lysine crotonylation as a new type of histone modificationQ24635918
Expressed protein ligation: a general method for protein engineeringQ24657669
Structure of HP1 chromodomain bound to a lysine 9-methylated histone H3 tailQ27638012
The language of covalent histone modificationsQ27860931
Chromatin modifications and their functionQ27861067
Proteome-wide analysis in Saccharomyces cerevisiae identifies several PHD fingers as novel direct and selective binding modules of histone H3 methylated at either lysine 4 or lysine 36.Q27929914
Histone modifications influence the action of Snf2 family remodelling enzymes by different mechanismsQ27934508
Genetically directing ɛ-N, N-dimethyl-L-lysine in recombinant histonesQ42841942
Semisynthesis of cytotoxic proteins using a modified protein splicing elementQ42846179
Systematic Identification of Methyllysine-Driven Interactions for Histone and Nonhistone TargetsQ42909185
Modular strategy for the semisynthesis of a K+ channel: investigating interactions of the pore helix.Q42931157
Protein synthesis assisted by native chemical ligation at leucineQ43076460
A pyrrolysine analogue for site-specific protein ubiquitinationQ43250699
Highly efficient and chemoselective peptide ubiquitylationQ43271585
Dual native chemical ligation at lysineQ43281390
Highly specific antibodies determine histone acetylation site usage in yeast heterochromatin and euchromatinQ43430561
Covalent capture: a new tool for the purification of synthetic and recombinant polypeptidesQ43672878
Synthesis of peptides and proteins without cysteine residues by native chemical ligation combined with desulfurizationQ43677070
Specific antibodies reveal ordered and cell-cycle-related use of histone-H4 acetylation sites in mammalian cellsQ44132037
A native peptide ligation strategy for deciphering nucleosomal histone modificationsQ44321482
Systematic identification of proteins binding to chromatin-embedded ubiquitylated H2B reveals recruitment of SWI/SNF to regulate transcription.Q44703962
Direct production of proteins with N-terminal cysteine for site-specific conjugationQ44900286
Peptide ligation-desulfurization chemistry at arginine.Q45217986
Convergent chemical synthesis of histone H2B protein for the site-specific ubiquitination at Lys34.Q45251784
N-methylation of isopeptide bond as a strategy to resist deubiquitinasesQ45710972
Chemoselective peptide ligation-desulfurization at aspartateQ45892251
Peptide ligation via the in-situ transformation of an amide into a thioester at a cysteine residue.Q46033733
The naturally split Npu DnaE intein exhibits an extraordinarily high rate in the protein trans-splicing reactionQ46080390
Histone H2B (and H2A) ubiquitination allows normal histone octamer and core particle reconstitutionQ46168928
Native chemical ligation at valineQ46484020
Genetically encoding N(epsilon)-acetyllysine in recombinant proteins.Q46751659
Free-radical-based, specific desulfurization of cysteine: a powerful advance in the synthesis of polypeptides and glycopolypeptidesQ46875940
Mechanism-based inhibition of Sir2 deacetylases by thioacetyl-lysine peptideQ46890032
Acetyl-lysine analog peptides as mechanistic probes of protein deacetylasesQ46939046
Native chemical ligation of polypeptidesQ47757953
Chemical studies of histone acetylation. Substrate specificity of a histone deacetylase from calf thymus nuclei.Q47833684
Trifluoroethanethiol: an additive for efficient one-pot peptide ligation-desulfurization chemistry.Q51731846
Single-column purification of free recombinant proteins using a self-cleavable affinity tag derived from a protein splicing elementQ56267595
Synthesis of ε-N-propionyl-, ε-N-butyryl-, and ε-N-crotonyl-lysine containing histone H3 using the pyrrolysine systemQ57376726
Genetically Encoded 1,2-Aminothiols Facilitate Rapid and Site-Specific Protein Labeling via a Bio-orthogonal Cyanobenzothiazole CondensationQ59319678
The leucine zipper domain controls the orientation of AP-1 in the NFAT.AP-1.DNA complexQ67426632
Purification of proteins fused to either the amino or carboxy terminus of the Mycobacterium xenopi gyrase A inteinQ78005223
Native chemical ligation at phenylalanineQ80689458
Native chemical ligation through in situ O to S acyl shiftQ81161668
Disulfide-directed histone ubiquitylation reveals plasticity in hDot1L activationQ83148073
Insights into the mechanism and catalysis of the native chemical ligation reactionQ83355026
Protein chemical synthesis by ligation of peptide hydrazidesQ84291313
A PHD finger of NURF couples histone H3 lysine 4 trimethylation with chromatin remodellingQ28242453
Expanding the genetic code of Escherichia coli with phosphoserineQ28246486
The PHD finger/bromodomain of NoRC interacts with acetylated histone H4K16 and is sufficient for rDNA silencingQ28594882
Mapping and analysis of chromatin state dynamics in nine human cell typesQ29547552
Active genes are tri-methylated at K4 of histone H3Q29547668
Partitioning and plasticity of repressive histone methylation states in mammalian chromatinQ29614513
Histone H4-K16 acetylation controls chromatin structure and protein interactionsQ29614521
WDR5 associates with histone H3 methylated at K4 and is essential for H3 K4 methylation and vertebrate developmentQ29614526
Synthesis of proteins by native chemical ligationQ29616750
Ubiquitination of histone H2B regulates H3 methylation and gene silencing in yeastQ29617217
A new strategy for glycoprotein synthesis: ligation of synthetic glycopeptides with truncated proteins expressed in E. coli as TEV protease cleavable fusion proteinQ30844999
Peptide thioester preparation by Fmoc solid phase peptide synthesis for use in native chemical ligationQ30872871
Epigenome microarray platform for proteome-wide dissection of chromatin-signaling networksQ30944751
Protein engineering by expressed protein ligationQ30961015
Peptide arrays on cellulose support: SPOT synthesis, a time and cost efficient method for synthesis of large numbers of peptides in a parallel and addressable fashionQ33286526
A combinatorial H4 tail library for exploring the histone codeQ33350596
Combinatorial profiling of chromatin binding modules reveals multisite discriminationQ33535222
Preparation of fully synthetic histone H3 reveals that acetyl-lysine 56 facilitates protein binding within nucleosomesQ33817639
Synthesis of native proteins by chemical ligationQ34019420
Accelerated chromatin biochemistry using DNA-barcoded nucleosome librariesQ34034234
A program for ligation at threonine sites: application to the controlled total synthesis of glycopeptidesQ34078234
Reconstitution of nucleosome core particles from recombinant histones and DNA.Q34296889
Scratching the (lateral) surface of chromatin regulation by histone modificationsQ34348859
Multivalent recognition of histone tails by the PHD fingers of CHD5Q34352597
Peptide microarrays to interrogate the "histone code".Q34387013
A cascade of histone modifications induces chromatin condensation in mitosis.Q34395441
Integrative annotation of chromatin elements from ENCODE dataQ34503932
Protein ligation: an enabling technology for the biophysical analysis of proteinsQ34529929
Semisynthesis of proteins by expressed protein ligationQ34531980
Auxiliary-mediated site-specific peptide ubiquitylation.Q34609386
Histone H2B ubiquitylation disrupts local and higher-order chromatin compactionQ34808188
A semisynthetic strategy to generate phosphorylated and acetylated histone H2B.Q34912456
Comprehensive analysis of the chromatin landscape in Drosophila melanogasterQ35030499
Histone fold modifications control nucleosome unwrapping and disassemblyQ35149617
Histone 2B can be modified by the attachment of ubiquitinQ35626907
Combinatorial complexity in chromatin structure and function: revisiting the histone codeQ35936019
Poly-acetylated chromatin signatures are preferred epitopes for site-specific histone H4 acetyl antibodiesQ36072539
Histone monoubiquitylation position determines specificity and direction of enzymatic cross-talk with histone methyltransferases Dot1L and PRC2.Q36078818
Facile synthesis of site-specifically acetylated and methylated histone proteins: reagents for evaluation of the histone code hypothesisQ36348025
Enhanced top-down characterization of histone post-translational modificationsQ36378096
Association of UHRF1 with methylated H3K9 directs the maintenance of DNA methylationQ36381487
Asymmetrically modified nucleosomesQ36401114
Ultrafast protein splicing is common among cyanobacterial split inteins: implications for protein engineeringQ36502962
Stability of nucleosomes containing homogenously ubiquitylated H2A and H2B prepared using semisynthesisQ36502967
Streamlined expressed protein ligation using split inteins.Q36530093
The n-SET domain of Set1 regulates H2B ubiquitylation-dependent H3K4 methylationQ36736313
Multivalent histone engagement by the linked tandem Tudor and PHD domains of UHRF1 is required for the epigenetic inheritance of DNA methylationQ36948989
Histone tails: ideal motifs for probing epigenetics through chemical biology approachesQ37139778
Chemically ubiquitylated histone H2B stimulates hDot1L-mediated intranucleosomal methylationQ37175650
Site-specific incorporation of ε-N-crotonyllysine into histonesQ37197898
Acetylation of histone H3 at the nucleosome dyad alters DNA-histone binding.Q37358082
Structure-activity analysis of semisynthetic nucleosomes: mechanistic insights into the stimulation of Dot1L by ubiquitylated histone H2B.Q37447402
Histone H3K27 trimethylation inhibits H3 binding and function of SET1-like H3K4 methyltransferase complexesQ37469434
Inteins: Nature's Gift to Protein ChemistsQ37630472
Chromatin as an expansive canvas for chemical biologyQ37733528
Spreading chromatin into chemical biologyQ37829703
9-Fluorenylmethoxycarbonyl-based solid-phase synthesis of peptide α-thioestersQ37835201
Designer proteins: applications of genetic code expansion in cell biologyQ37983986
Emerging roles for chromatin as a signal integration and storage platformQ38092575
Readout of epigenetic modificationsQ38103962
Using chemistry to investigate the molecular consequences of protein ubiquitylationQ38224374
Novel types and sites of histone modifications emerge as players in the transcriptional regulation contestQ38249060
An efficient Fmoc-SPPS approach for the generation of thioester peptide precursors for use in native chemical ligationQ38589907
Chemical synthesis of peptides and proteinsQ39532197
Reciprocal intronic and exonic histone modification regions in humans.Q39634800
Structure of ChromatinQ39687258
A method for genetically installing site-specific acetylation in recombinant histones defines the effects of H3 K56 acetylationQ40097842
Quantitative assessment of protein interaction with methyl-lysine analogues by hybrid computational and experimental approachesQ40628134
Biological Applications of Protein SplicingQ41230320
The site-specific installation of methyl-lysine analogs into recombinant histonesQ41978659
Phosphorylation of histone H3(T118) alters nucleosome dynamics and remodelingQ42230215
Understanding the words of chromatin regulationQ42274324
The effects of histone H4 tail acetylations on cation-induced chromatin folding and self-association.Q42701117
P433issue1
P407language of work or nameEnglishQ1860
P304page(s)265-90
P577publication date2015-01-01
P1433published inAnnual Review of BiochemistryQ567356
P1476titleApplication of the protein semisynthesis strategy to the generation of modified chromatin
P478volume84

Reverse relations

cites work (P2860)
Q41092167'Traceless' tracing of proteins - high-affinity trans-splicing directed by a minimal interaction pair
Q482149712016 EMBO Chemical Biology Conference
Q33817548A Chemical Biology Approach to Reveal Sirt6-targeted Histone H3 Sites in Nucleosomes.
Q33807310A semisynthetic Atg3 reveals that acetylation promotes Atg3 membrane binding and Atg8 lipidation.
Q92067494Chemical Biology of Autophagy-Related Proteins With Posttranslational Modifications: From Chemical Synthesis to Biological Applications
Q37093722Chemical Synthesis of Phosphorylated Histone H2A at Tyr57 Reveals Insight into the Inhibition Mode of the SAGA Deubiquitinating Module.
Q38700270Chemical and semisynthesis of modified histones.
Q47810690Chemical biology approaches for studying posttranslational modifications
Q47101708Emerging Chemistry Strategies for Engineering Native Chromatin.
Q55379654Genetic Code Expansion: A Powerful Tool for Understanding the Physiological Consequences of Oxidative Stress Protein Modifications.
Q30390809Impaired Chaperone Activity of Human Heat Shock Protein Hsp27 Site-Specifically Modified with Argpyrimidine
Q98771711Interactions With Histone H3 & Tools to Study Them
Q55512348Lysine-14 acetylation of histone H3 in chromatin confers resistance to the deacetylase and demethylase activities of an epigenetic silencing complex.
Q50494189Reading chromatin signatures after DNA double-strand breaks.
Q92233232Semisynthesis of ubiquitinated histone H2B with a native or nonhydrolyzable linkage
Q92003087Strategies for Generating Modified Nucleosomes: Applications within Structural Biology Studies
Q50861673Synthesis of l- and d-Ubiquitin by One-Pot Ligation and Metal-Free Desulfurization.
Q28821689The Die Is Cast: Precision Electrophilic Modifications Contribute to Cellular Decision Making
Q50280774Total Chemical Synthesis of Modified Histones
Q47693387Total chemical synthesis of histones and their analogs, assisted by native chemical ligation and palladium complexes
Q48265854Utility of the Phenacyl Protecting Group in Traceless Protein Semisynthesis through Ligation-Desulfurization Chemistry.

Search more.