Estimating absolute rates of molecular evolution and divergence times: a penalized likelihood approach (scientific article (publication date: 2002))

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Q28653250	Evolution of climatic niche specialization: a phylogenetic analysis in amphibians
Q28751313	Evolution of exceptional species richness among lineages of fleshy-fruited Myrtaceae
Q28754460	Evolution of gigantism in amphiumid salamanders
Q47291971	Evolution of host specialization in the Adelgidae (Insecta: Hemiptera) inferred from molecular phylogenetics.
Q45333151	Evolution of life cycle, colony morphology, and host specificity in the family Hydractiniidae (Hydrozoa, Cnidaria).
Q21192748	Evolution of miniaturization and the phylogenetic position of Paedocypris, comprising the world's smallest vertebrate
Q24629088	Evolution of modern birds revealed by mitogenomics: timing the radiation and origin of major orders
Q34043337	Evolution of molybdenum nitrogenase during the transition from anaerobic to aerobic metabolism
Q36740032	Evolution of protein families: is it possible to distinguish between domains of life?
Q28657890	Evolution of rapid development in spadefoot toads is unrelated to arid environments
Q31060574	Evolution of rattlesnakes (Viperidae; Crotalus) in the warm deserts of western North America shaped by Neogene vicariance and Quaternary climate change
Q24671123	Evolution of the army ant syndrome: The origin and long-term evolutionary stasis of a complex of behavioral and reproductive adaptations
Q28596267	Evolution of the climatic tolerance and postglacial range changes of the most primitive orchids (Apostasioideae) within Sundaland, Wallacea and Sahul
Q44306025	Evolution of the closely related, sex-related genes DM-W and DMRT1 in African clawed frogs (Xenopus)
Q28821132	Evolution of the elaborate male intromittent organ of Xiphophorus fishes
Q33549045	Evolution of the nocturnal Nearctic Sphaeropthalminae velvet ants (Hymenoptera: Mutillidae) driven by Neogene orogeny and Pleistocene glaciation.
Q21192745	Evolution of the parasitic wasp subfamily Rogadinae (Braconidae): phylogeny and evolution of lepidopteran host ranges and mummy characteristics
Q28764865	Evolution of the species-rich Cape flora
Q46501091	Evolution under pressure and the adaptation of visual pigment compressibility in deep-sea environments.
Q28960335	Evolutionary Relationships and Diversification of Stachyuraceae Based on Sequences of Four Chloroplast Markers and the Nuclear Ribosomal ITS Region
Q47347152	Evolutionary biology: ferns reawakened
Q46273159	Evolutionary cascades induced by large frugivores
Q21283849	Evolutionary divergence times in the Annonaceae: evidence of a late Miocene origin of Pseuduvaria in Sundaland with subsequent diversification in New Guinea
Q92932402	Evolutionary diversity in tropical tree communities peaks at intermediate precipitation
Q28649342	Evolutionary history and leaf succulence as explanations for medicinal use in aloes and the global popularity of Aloe vera
Q33834723	Evolutionary history and phylogeographic relationships of shrews from Sorex araneus group
Q38901437	Evolutionary history of the butterflyfishes (f: Chaetodontidae) and the rise of coral feeding fishes.
Q34560262	Evolutionary origin of highly repetitive plastid genomes within the clover genus (Trifolium).
Q28661067	Evolutionary origins and diversification of proteobacterial mutualists
Q28654450	Evolutionary origins of human herpes simplex viruses 1 and 2
Q29618553	Evolutionary rates analysis of Leguminosae implicates a rapid diversification of lineages during the tertiary
Q33239787	Evolutionary rates, divergence dates, and the performance of mitochondrial genes in Bayesian phylogenetic analysis
Q34782130	Evolutionary relationships among food habit, loss of flight, and reproductive traits: life-history evolution in the Silphinae (Coleoptera: Silphidae).
Q29300642	Evolutionary response of Caragana (Fabaceae) to Qinghai–Tibetan Plateau uplift and Asian interior aridification
Q34582748	Evolutionary systematics in African gerbilline rodents of the genus Gerbilliscus: inference from mitochondrial genes
Q46566623	Evolutionary timescale of monocots determined by the fossilized birth-death model using a large number of fossil records
Q58310258	Evolutionary transitions towards eusociality in snapping shrimps
Q54045634	Evolving Perceptions on the Antiquity of the Modern Avian Tree
Q28755143	Exceptional among-lineage variation in diversification rates during the radiation of Australia's most diverse vertebrate clade
Q34250934	Expanded phylogenetic and dating analyses of the apples and their relatives (Pyreae, Rosaceae).
Q34722435	Experimental evidence that evolutionarily diverse assemblages result in higher productivity
Q46288145	Explaining ecosystem multifunction with evolutionary models
Q58907801	Exploring Diversification and Genome Size Evolution in Extant Gymnosperms through Phylogenetic Synthesis
Q46861984	Exploring new dating approaches for parasites: the worldwide Apodanthaceae (Cucurbitales) as an example
Q24651677	Explosive Pleistocene diversification and hemispheric expansion of a "great speciator"
Q57833798	Explosive evolution of an ancient group of Cyphophthalmi (Arachnida: Opiliones) in the Balkan Peninsula
Q28681047	Explosive radiation in high Andean Hypericum-rates of diversification among New World lineages
Q28242184	Extended mitogenomic phylogenetic analyses yield new insight into crocodylian evolution and their survival of the Cretaceous-Tertiary boundary
Q36353662	Extinction vs. Rapid Radiation: The Juxtaposed Evolutionary Histories of Coelotine Spiders Support the Eocene-Oligocene Orogenesis of the Tibetan Plateau
Q42506279	Extreme gender flexibility: using a phylogenetic framework to infer the evolution of variation in sex allocation, phylogeography, and speciation in a genus of bidirectional sex changing fishes (Lythrypnus, Gobiidae).
Q55933657	FOSSIL CALIBRATIONS AND MOLECULAR DIVERGENCE TIME ESTIMATES IN CENTRARCHID FISHES (TELEOSTEI: CENTRARCHIDAE)
Q27319874	Fast Dating Using Least-Squares Criteria and Algorithms
Q33200741	Ferns diversified in the shadow of angiosperms
Q53393309	Fine-scale biogeographical and temporal diversification processes of peacock swallowtails (PapiliosubgenusAchillides) in the Indo-Australian Archipelago
Q21132481	First evidence for a massive extinction event affecting bees close to the K-T boundary
Q28651163	Five major shifts of diversification through the long evolutionary history of Magnoliidae (angiosperms)
Q34168678	Fluctuating environments, sexual selection and the evolution of flexible mate choice in birds
Q24648722	Former diversity of Ephedra (Gnetales): evidence from Early Cretaceous seeds from Portugal and North America
Q42036997	Fossil-calibrated molecular phylogenies reveal that leaf-mining moths radiated millions of years after their host plants.
Q33285498	Fossils, molecules, divergence times, and the origin of lissamphibians
Q21089841	Framing the Salmonidae family phylogenetic portrait: a more complete picture from increased taxon sampling
Q33461743	Frequent mitochondrial gene introgression among high elevation Tibetan megophryid frogs revealed by conflicting gene genealogies
Q47142731	From ground pools to treeholes: convergent evolution of habitat and phenotype in Aedes mosquitoes.
Q42012406	From trajectories to averages: an improved description of the heterogeneity of substitution rates along lineages
Q55950870	From words to dates: water into wine, mathemagic or phylogenetic inference?
Q45151208	Fungi evolution revisited: application of the penalized likelihood method to a Bayesian fungal phylogeny provides a new perspective on phylogenetic relationships and divergence dates of Ascomycota groups
Q21093398	Gain and loss of elongation factor genes in green algae
Q28767952	Gene transfer from a parasitic flowering plant to a fern
Q34529648	Gene trees and species trees: irreconcilable differences
Q34031511	Genes encoding plastid acetyl-CoA carboxylase and 3-phosphoglycerate kinase of the Triticum/Aegilops complex and the evolutionary history of polyploid wheat
Q91854920	Genetic analysis of the invasive alga Didymosphenia geminata in Southern Argentina: Evidence of a Pleistocene origin of local lineages
Q30831310	Genetic elucidation of cryptic and ancient diversity in a group of Australian diplodactyline geckos: the Diplodactylus vittatus complex.
Q92264353	Genome Size Evolution Differs Between Drosophila Subgenera with Striking Differences in Male and Female Genome Size in Sophophora
Q60400193	Genome expansion and lineage-specific genetic innovations in the forest pathogenic fungi Armillaria
Q110697298	Genome-wide ultraconserved elements resolve phylogenetic relationships and biogeographic history among Neotropical leaf-nosed bats in the genus Anoura (Phyllostomidae)
Q47989098	Genomic clocks and evolutionary timescales
Q90387786	Genomic signature of shifts in selection in a sub-alpine ant and its physiological adaptations
Q50133583	Genomics of the origin and evolution of Citrus.
Q28960393	Gentianella stiriaca, a Case of Reticulate Evolution in the Northeastern and Eastern Central Alps
Q90350357	Geographic distributions, phenotypes, and phylogenetic relationships of Phalloceros (Cyprinodontiformes: Poeciliidae): Insights about diversification among sympatric species pools
Q111629827	Geographical vs. ecological diversification in Carex section Phacocystis (Cyperaceae): Patterns hidden behind a twisted taxonomy
Q31124509	Geological and climatic forces driving speciation in the continentally distributed trilling chorus frogs (Pseudacris).
Q33283006	Geological dates and molecular rates: rapid divergence of rivers and their biotas
Q22162503	Geologically ancient DNA: fact or artefact?
Q64931523	Global Rate Variation in Bony Vertebrates.
Q35225196	Global biogeography of Alnus-associated Frankia actinobacteria
Q28651722	Global biogeography of scaly tree ferns (Cyatheaceae): evidence for Gondwanan vicariance and limited transoceanic dispersal
Q28706228	Global ecological pattern of ammonia-oxidizing archaea
Q39295972	Global history of the ancient monocot family Araceae inferred with models accounting for past continental positions and previous ranges based on fossils
Q28763734	Global patterns of diversification in the history of modern amphibians
Q46212494	Global patterns of leaf defenses in oak species
Q63616761	Global predictors of alien plant establishment success: combining niche and trait proxies
Q28732233	Gone with the plate: the opening of the Western Mediterranean basin drove the diversification of ground-dweller spiders
Q51955260	Gymnosperms on the EDGE.
Q57038767	Habitat fragmentation and genetic variability of tetrapod populations
Q28749633	Have giant lobelias evolved several times independently? Life form shifts and historical biogeography of the cosmopolitan and highly diverse subfamily Lobelioideae (Campanulaceae)
Q33675296	Heterogeneous molecular processes among the causes of how sequence similarity scores can fail to recapitulate phylogeny
Q28749009	Hidden levels of phylodiversity in Antarctic green algae: further evidence for the existence of glacial refugia
Q33301039	High variation and strong phylogeographic pattern among cpDNA haplotypes in Taxus wallichiana (Taxaceae) in China and North Vietnam.
Q21089897	Higher level phylogeny and the first divergence time estimation of Heteroptera (Insecta: Hemiptera) based on multiple genes
Q54086228	Higher-level metazoan relationships: recent progress and remaining questions
Q28184490	Higher-level systematics of rodents and divergence time estimates based on two congruent nuclear genes
Q28764869	Historical biogeography of two cosmopolitan families of flowering plants: Annonaceae and Rhamnaceae
Q28764914	Historical climate change and speciation: neotropical seasonally dry forest plants show patterns of both tertiary and quaternary diversification
Q28710564	Hornwort pyrenoids, carbon-concentrating structures, evolved and were lost at least five times during the last 100 million years
Q28744634	Host shifts and evolutionary radiations of butterflies
Q33577316	Host-associated genetic differentiation in a seed parasitic weevil Rhinusa antirrhini (Coleptera: Curculionidae) revealed by mitochondrial and nuclear sequence data
Q44239378	Host-symbiont stability and fast evolutionary rates in an ant-bacterium association: cospeciation of camponotus species and their endosymbionts, candidatus blochmannia
Q33540166	How accurate and robust are the phylogenetic estimates of Austronesian language relationships?
Q34582699	How and when did Old World ratsnakes disperse into the New World?
Q35493111	How do alien plants fit in the space-phylogeny matrix?
Q36260502	How the Aridification of Australia Structured the Biogeography and Influenced the Diversification of a Large Lineage of Australian Cicadas
Q28710489	How to handle speciose clades? Mass taxon-sampling as a strategy towards illuminating the natural history of Campanula (Campanuloideae)
Q45330563	Hybridization, mitochondrial DNA phylogeography, and prediction of the early stages of reproductive isolation: lessons from New Zealand cicadas (genus Kikihia).
Q28752668	Impact of duplicate gene copies on phylogenetic analysis and divergence time estimates in butterflies
Q38928215	Impact of gene family evolutionary histories on phylogenetic species tree inference by gene tree parsimony
Q33624788	Including secondary structure, fossils and molecular dating in the centipede tree of life
Q35642382	Incompatible Ages for Clearwing Butterflies Based on Alternative Secondary Calibrations
Q44354410	Incorporating parasite systematics in comparative analyses of variation in spleen mass and testes sizes of rodents
Q56636709	Incorporating phylogenetic uncertainty on phylogeny-based palaeontological dating and the timing of turtle diversification
Q21092760	Independently evolving species in asexual bdelloid rotifers
Q30797551	Inference of a radiation in Mastus (Gastropoda, Pulmonata, Enidae) on the island of Crete
Q31009923	Inflation of Molecular Clock Rates and Dates: Molecular Phylogenetics, Biogeography, and Diversification of a Global Cicada Radiation from Australasia (Hemiptera: Cicadidae: Cicadettini).
Q21283984	Influence of Tertiary paleoenvironmental changes on the diversification of South American mammals: a relaxed molecular clock study within xenarthrans
Q30823492	Infrequent and unidirectional colonization of hyperdiverse Papuadytes diving beetles in New Caledonia and New Guinea
Q60949419	Insights into the Evolution of the New World Diploid Cottons (Gossypium, Subgenus Houzingenia) Based on Genome Sequencing
Q21089904	Insights into the ecology and evolutionary success of crocodilians revealed through bite-force and tooth-pressure experimentation
Q36649867	Insights into the historical construction of species-rich biomes from dated plant phylogenies, neutral ecological theory and phylogenetic community structure
Q31155010	Integrating coalescent and phylogenetic approaches to delimit species in the lichen photobiont Trebouxia.
Q56480816	Integrating phylogeny, molecular clocks, and the fossil record in the evolution of coralline algae (Corallinales and Sporolithales, Rhodophyta)
Q34378834	Integrating reptilian herpesviruses into the family herpesviridae
Q21093621	Integration of molecules and new fossils supports a Triassic origin for Lepidosauria (lizards, snakes, and tuatara)
Q59330302	Integration of phylogenomics and molecular modeling reveals lineage-specific diversification of toxins in scorpions
Q33240218	Intercontinental biogeography of subfamily Orontioideae (Symplocarpus, Lysichiton, and Orontium) of Araceae in Eastern Asia and North America
Q47247110	Internal consistency as a method to assess the quality of dating estimates using multiple markers.
Q34230475	Interplay between oxygen and Fe-S cluster biogenesis: insights from the Suf pathway
Q54787230	Interspecific delimitation and phylogenetic origin of Pugionium (Brassicaceae)
Q46604283	Intraspecific variability and timing in ancestral ecology reconstruction: a test case from the cape flora
Q28764829	Introduction and synthesis: Plant phylogeny and the origin of major biomes
Q59159182	Intron evolution in a phylogenetic perspective: Divergent trends in the two copies of the duplicateddefgene inImpatiensL. (Balsaminaceae)
Q91829025	Is dispersal mode a driver of diversification and geographical distribution in the tropical plant family Melastomataceae?
Q38404852	Karyotypic changes through dysploidy persist longer over evolutionary time than polyploid changes
Q42034202	Karyotypic diversity and speciation in Agrodiaetus butterflies
Q51144949	Key questions and challenges in angiosperm macroevolution.
Q45722103	Landscape genetic patterns of the rainbow darter Etheostoma caeruleum: a catchment analysis of mitochondrial DNA sequences and nuclear microsatellites.
Q37847750	Language evolution and human history: what a difference a date makes
Q64013335	Large-scale molecular phylogeny, morphology, divergence-time estimation, and the fossil record of advanced caenophidian snakes (Squamata: Serpentes)
Q45740213	Large-scale patterns of diversification in the widespread legume genus Senna and the evolutionary role of extrafloral nectaries
Q110697235	Large-scale phylogenomics of the genus Macrostomum (Platyhelminthes) reveals cryptic diversity and novel sexual traits
Q28763986	Late Cretaceous vicariance in Gondwanan amphibians
Q30051479	Lineage divergence of a freshwater snail clade associated with post-Tethys marine basin development
Q90015638	Local and relaxed clocks: the best of both worlds
Q34303980	Local molecular clocks in three nuclear genes: divergence times for rodents and other mammals and incompatibility among fossil calibrations
Q34159872	Loss of flight promotes beetle diversification
Q24547650	Low genetic variation and no detectable population structure in aspergillus fumigatus compared to closely related Neosartorya species
Q28710442	Low rates of lateral gene transfer among metabolic genes define the evolving biogeochemical niches of archaea through deep time
Q101632489	Lygosomine phylogeny and the origins of Australian scincid lizards
Q56975237	Macroecology meets macroevolution: evolutionary niche dynamics in the seaweedHalimeda
Q28602526	Madagascar's grasses and grasslands: anthropogenic or natural?
Q24657281	Major evolutionary transitions in ant agriculture
Q34777890	Major histocompatibility complex class I evolution in songbirds: universal primers, rapid evolution and base compositional shifts in exon 3
Q36877395	Mammalian evolution and biomedicine: new views from phylogeny
Q59128410	Manipulating plant phylogenetic diversity for green roof ecosystem service delivery
Q33998387	Mass extinction, gradual cooling, or rapid radiation? Reconstructing the spatiotemporal evolution of the ancient angiosperm genus Hedyosmum (Chloranthaceae) using empirical and simulated approaches
Q21090254	Mastacembelid eels support Lake Tanganyika as an evolutionary hotspot of diversification
Q56384888	Measurably evolving populations
Q52924854	Mechanical sensitivity and the dynamics of evolutionary rate shifts in biomechanical systems.
Q36083684	Mechanistic model of evolutionary rate variation en route to a nonphotosynthetic lifestyle in plants.
Q67212840	Megaphylogeny resolves global patterns of mushroom evolution
Q28764858	Metacommunity process rather than continental tectonic history better explains geographically structured phylogenies in legumes
Q96179568	Microcnemum coralloides (Chenopodiaceae- Salicornioideae): an example of intraspecific East-West disjunctions in the Mediterranean region
Q47289458	Mid-Tertiary dispersal, not Gondwanan vicariance explains distribution patterns in the wax palm subfamily (Ceroxyloideae: Arecaceae).
Q104454945	Millipede assassins and allies (Heteroptera: Reduviidae: Ectrichodiinae, Tribelocephalinae): total evidence phylogeny, revised classification and evolution of sexual dimorphism
Q33857350	Missing data in phylogenetic analysis: reconciling results from simulations and empirical data
Q30876465	Mitochondrial DNA phylogeography and population history of Meladema diving beetles on the Atlantic Islands and in the Mediterranean basin (Coleoptera, Dytiscidae).
Q21283953	Mitochondrial phylogeny and phylogeography of East African squeaker catfishes (Siluriformes: Synodontis)
Q44273960	Mitochondrial phylogeography of New Zealand freshwater crayfishes, Paranephrops spp.
Q33582622	Mitochondrial substitution rates are extraordinarily elevated and variable in a genus of flowering plants
Q34007359	Mitogenomic analyses of caniform relationships
Q34457769	Mitogenomic analyses place the gharial (Gavialis gangeticus) on the crocodile tree and provide pre-K/T divergence times for most crocodilians
Q37425940	Modeling extinction risk of endemic birds of mainland china
Q41758840	Modularized evolution in archaeal methanogens phylogenetic forest
Q98225272	Molecular Evaluation of the Fairy Shrimp Family Branchinectidae (Crustacea: Anostraca) Supports Peripatric Speciation and Complex Divergence Patterns
Q55755642	Molecular Phylogenetics and Biogeography of the Caribbean-Centered Croton Subgenus Moacroton (Euphorbiaceae s.s.)
Q21090986	Molecular and phenotypic evidence of a new species of genus Esox (Esocidae, Esociformes, Actinopterygii): the southern pike, Esox flaviae
Q47363050	Molecular architecture and rates of DNA substitutions of the mitochondrial control region of cracid birds
Q35685501	Molecular clocks and explosive radiations
Q42657413	Molecular clocks and geological dates: cytochrome b of Anolis extremus substantially contradicts dating of Barbados emergence
Q28607312	Molecular clocks and the early evolution of metazoan nervous systems
Q54555079	Molecular data resolves relationships within Heteroceridae (Coleoptera: Dryopoidea)
Q51965446	Molecular dates for the "cambrian explosion": the influence of prior assumptions.
Q47271449	Molecular dating and biogeography of fig-pollinating wasps
Q21283961	Molecular dating of caprines using ancient DNA sequences of Myotragus balearicus, an extinct endemic Balearic mammal
Q34604991	Molecular dating of phylogenies by likelihood methods: a comparison of models and a new information criterion
Q29042433	Molecular dating of the ‘Gondwanan’ plant family Proteaceae is only partially congruent with the timing of the break-up of Gondwana
Q47384392	Molecular estimation of eulipotyphlan divergence times and the evolution of "Insectivora".
Q48075325	Molecular evidence for a rapid late-Miocene radiation of Australasian venomous snakes (Elapidae, Colubroidea).
Q43944462	Molecular evidence for broad-scale distributions in bdelloid rotifers: everything is not everywhere but most things are very widespread
Q39266009	Molecular evidence for the age, origin, and evolutionary history of the American desert plant genus Tiquilia (Boraginaceae).
Q28775831	Molecular evidence links cryptic diversification in polar planktonic protists to Quaternary climate dynamics
Q47305789	Molecular phylogenetic dating of asterid flowering plants shows early Cretaceous diversification
Q51974560	Molecular phylogenetics and biogeography of Neotropical piping guans (Aves: Galliformes): Pipile Bonaparte, 1856 is synonym of Aburria Reichenbach, 1853.
Q28658795	Molecular phylogenetics and temporal diversification in the genus Aeromonas based on the sequences of five housekeeping genes
Q43863231	Molecular phylogenetics of shrews (Mammalia: Soricidae) reveal timing of transcontinental colonizations
Q110451177	Molecular phylogenetics of sub-Saharan African natricine snakes, and the biogeographic origins of the Seychelles endemic Lycognathophis seychellensis
Q28301872	Molecular phylogenetics of the Gloeophyllales and relative ages of clades of Agaricomycotina producing a brown rot
Q38883708	Molecular phylogenetics of the Ronnbergia Alliance (Bromeliaceae, Bromelioideae) and insights into their morphological evolution.
Q28236239	Molecular phylogenetics of the butterflyfishes (Chaetodontidae): taxonomy and biogeography of a global coral reef fish family
Q28755727	Molecular phylogenetics reveal multiple tertiary vicariance origins of the African rain forest trees
Q33347390	Molecular phylogenies and historical biogeography of a circumtropical group of gastropods (Genus: Nerita): implications for regional diversity patterns in the marine tropics
Q47264782	Molecular phylogeny and biogeography of Pseudotsuga (Pinaceae): insights into the floristic relationship between Taiwan and its adjacent areas.
Q40270520	Molecular phylogeny and biogeography of an ancient Holarctic lineage of mygalomorph spiders (Araneae: Antrodiaetidae: Antrodiaetus).
Q21385694	Molecular phylogeny and biogeography of the Cuban genus Girardinus Poey, 1854 and relationships within the tribe Girardinini (Actinopterygii, Poeciliidae).
Q53126754	Molecular phylogeny and biogeography of the Neotropical cichlid fish tribe Cichlasomatini (Teleostei: Cichlidae: Cichlasomatinae).
Q47199323	Molecular phylogeny and dating of Asteliaceae (Asparagales): Astelia s.l. evolution provides insight into the Oligocene history of New Zealand
Q44655351	Molecular phylogeny and historical biogeography of the land snail genus Solatopupa (Pulmonata) in the peri-Tyrrhenian area
Q47222014	Molecular phylogeny and intra- and intercontinental biogeography of Calycanthaceae
Q28282003	Molecular phylogeny and node time estimation of bioluminescent Lantern Sharks (Elasmobranchii: Etmopteridae)
Q54555232	Molecular phylogeny of Pacific Island Colymbetinae: radiation of New Caledonian and Fijian species (Coleoptera, Dytiscidae)
Q21284028	Molecular phylogeny of microhylid frogs (Anura: Microhylidae) with emphasis on relationships among New World genera
Q28757488	Molecular phylogeny of the Drosophila obscura species group, with emphasis on the Old World species
Q51860469	Molecular phylogeny of the genus Pseudoplatystoma (Bleeker, 1862): biogeographic and evolutionary implications.
Q39909301	Molecular phylogeny of the small carpenter bees (Hymenoptera: Apidae: Ceratinini) indicates early and rapid global dispersal
Q28742212	Molecular phylogeny of the subgenus Ceratotropis (genus Vigna, Leguminosae) reveals three eco-geographical groups and Late Pliocene-Pleistocene diversification: evidence from four plastid DNA region sequences
Q28648313	Molecular phylogeny reveals high diversity, geographic structure and limited ranges in neotenic net-winged beetles platerodrilus (coleoptera: lycidae)
Q42044428	Molecular phylogeny, historical biogeography, and divergence time estimates for swallowtail butterflies of the genus Papilio (Lepidoptera: Papilionidae).
Q41465677	Molecular phylogeography reveals island colonization history and diversification of western Indian Ocean sunbirds (Nectarinia: Nectariniidae).
Q46879713	Molecular systematics and biogeography of Logania R.Br. (Loganiaceae).
Q33200885	Molecular systematics of Salmonidae: combined nuclear data yields a robust phylogeny
Q33538756	Molecular systematics: A synthesis of the common methods and the state of knowledge
Q38257608	Molecular-clock methods for estimating evolutionary rates and timescales
Q24653740	Molecules, morphology, and ecology indicate a recent, amphibious ancestry for echidnas
Q28751193	Monophyly of terrestrial adephagan beetles as indicated by three nuclear genes (Coleoptera: Carabidae and Trachypachidae)
Q30051485	Morphology, molecular phylogeny, and taxonomic inconsistencies in the study ofBradypussloths (Pilosa: Bradypodidae)
Q45892372	Multilocus analyses of an Antarctic fish species flock (Teleostei, Notothenioidei, Trematominae): phylogenetic approach and test of the early-radiation event
Q33270523	Multilocus genealogies reveal multiple cryptic species and biogeographical complexity in the California turret spider Antrodiaetus riversi (Mygalomorphae, Antrodiaetidae).
Q28764837	Multiple Miocene Melastomataceae dispersal between Madagascar, Africa and India
Q28597678	Multiple Polyploidization Events across Asteraceae with Two Nested Events in the Early History Revealed by Nuclear Phylogenomics
Q28756334	Multiple ancient origins of neoteny in Lycidae(Coleoptera): consequences for ecology and macroevolution
Q24676802	Multiple gene evidence for expansion of extant penguins out of Antarctica due to global cooling
Q36259453	Multiple measures could alleviate long-branch attraction in phylogenomic reconstruction of Cupressoideae (Cupressaceae).
Q28768106	Multiple mechanisms promote the retained expression of gene duplicates in the tetraploid frog Xenopus laevis
Q38632274	Mutation predicts 40 million years of fly wing evolution.
Q28768534	Naked corals: skeleton loss in Scleractinia
Q41443922	Neoendemism in Madagascan scaly tree ferns results from recent, coincident diversification bursts
Q44197149	Neotropical mutualism between Acacia and Pseudomyrmex: phylogeny and divergence times
Q30440287	Neutral theory, phylogenies, and the relationship between phenotypic change and evolutionary rates
Q51629171	New heuristic methods for joint species delimitation and species tree inference.
Q57898440	New phylogenetic hypotheses for the core Chlorophyta based on chloroplast sequence data
Q28681692	Next-generation museomics disentangles one of the largest primate radiations
Q67244128	Next-generation museum genomics: Phylogenetic relationships among palpimanoid spiders using sequence capture techniques (Araneae: Palpimanoidea)
Q34815066	Niche conservatism constrains Australian honeyeater assemblages in stressful environments
Q44022175	Niche evolution and adaptive radiation: testing the order of trait divergence
Q57585279	Noise and biases in genomic data may underlie radically different hypotheses for the position of Iguania within Squamata
Q34674529	Nonuniform processes of chromosome evolution in sedges (Carex: Cyperaceae).
Q35911509	Not going with the flow: a comprehensive time-calibrated phylogeny of dragonflies (Anisoptera: Odonata: Insecta) provides evidence for the role of lentic habitats on diversification
Q46884468	Not only for egg yolk--functional and evolutionary insights from expression, selection, and structural analyses of Formica ant vitellogenins.
Q30838201	Novel non-parametric models to estimate evolutionary rates and divergence times from heterochronous sequence data.
Q42154275	Nuclear and mitochondrial sequences confirm complex colonization patterns and clear species boundaries for flightless weevils in the Galápagos archipelago
Q91792264	Nuclear and plastid DNA phylogeny of tribe Cardueae (Compositae) with Hyb-Seq data: A new subtribal classification and a temporal diversification framework
Q46049880	Nuclear gene phylogeography reveals the historical legacy of an ancient inland sea on lineages of the western pond turtle, Emys marmorata in California
Q44416006	Nuclear ribosomal DNA and karyotypes indicate a NW African origin of South American Hypochaeris (Asteraceae, Cichorieae).
Q45072336	Nucleotide substitution rates for the full set of mitochondrial protein-coding genes in Coleoptera
Q33933014	On the accuracy of language trees
Q28655429	On the age of eukaryotes: evaluating evidence from fossils and molecular clocks
Q36255641	Ongoing Speciation and Gene Flow between Taxonomically Challenging Trochulus Species Complex (Gastropoda: Hygromiidae).
Q28960191	Origin and Relationships of the Austral Genus Abrotanella (Asteraceae) Inferred from DNA Sequences
Q33328148	Origin and diversification of the Greater Cape flora: ancient species repository, hot-bed of recent radiation, or both?
Q39894708	Origin and early evolution of photosynthetic eukaryotes in freshwater environments: reinterpreting proterozoic paleobiology and biogeochemical processes in light of trait evolution
Q92317603	Origin and evolution of the genus Piper in Peninsular India
Q24648292	Origin, adaptive radiation and diversification of the Hawaiian lobeliads (Asterales: Campanulaceae)
Q99975701	Origins and diversification of Indo-West Pacific marine fauna: evolutionary history and biogeography of turban shells (Gastropoda, Turbinidae)
Q30350457	Origins of host-specific populations of the blast pathogen Magnaporthe oryzae in crop domestication with subsequent expansion of pandemic clones on rice and weeds of rice.
Q34618988	Origins of social parasitism: the importance of divergence ages in phylogenetic studies
Q21283970	Out of Tanganyika: genesis, explosive speciation, key-innovations and phylogeography of the haplochromine cichlid fishes
Q42031935	Out-of-Africa origin and dispersal-mediated diversification of the butterfly genus Junonia (Nymphalidae: Nymphalinae).
Q57069626	PHYLOGENETIC ANALYSES REVEAL UNEXPECTED PATTERNS IN THE EVOLUTION OF REPRODUCTIVE MODES IN FROGS
Q99637278	Palaeoclimate ocean conditions shaped the evolution of corals and their skeletons through deep time
Q34985558	Pan-vertebrate comparative genomics unmasks retrovirus macroevolution
Q42063452	Parallel Evolution and Horizontal Gene Transfer of the pst Operon in Firmicutes from Oligotrophic Environments.
Q28756403	Pattern and timing of diversification in Yucca (Agavaceae): specialized pollination does not escalate rates of diversification
Q45016634	Patterns and processes in the genetic differentiation of the Brachionus calyciflorus complex, a passively dispersing freshwater zooplankton
Q28764852	Patterns in the assembly of temperate forests around the Northern Hemisphere
Q39947348	Patterns of diversification and ancestral range reconstruction in the southeast Asian-Pacific angiosperm lineage Cyrtandra (Gesneriaceae).
Q51527927	Patterns of mammalian diversification in recent evolutionary times: global tendencies and methodological issues.
Q33526705	Peatmoss (Sphagnum) diversification associated with Miocene Northern Hemisphere climatic cooling?
Q57077595	Phylogenetic Hypothesis Testing
Q28960145	Phylogenetic Relationships and Biogeography of Ranunculus and Allied Genera (Ranunculaceae) in the Mediterranean Region and in the European Alpine System
Q28754609	Phylogenetic analyses: A toolbox expanding towards Bayesian methods
Q47282105	Phylogenetic analysis informed by geological history supports multiple, sequential invasions of the Mediterranean Basin by the angiosperm family Araceae
Q57568122	Phylogenetic analysis of 1.5 Mbp and platypus EST data refute the Marsupionta hypothesis and unequivocally support Monotremata as sister group to Marsupialia/Placentalia
Q28279563	Phylogenetic analysis of Hordeum (Poaceae) as inferred by nuclear rDNA ITS sequences
Q21562349	Phylogenetic analysis of seven WRKY genes across the palm subtribe Attaleinae (Arecaceae) [corrected] identifies Syagrus as sister group of the coconut
Q33254631	Phylogenetic analysis of the evolution of the niche in lizards of the Anolis sagrei group
Q31162300	Phylogenetic and biogeographic complexity of Magnoliaceae in the Northern Hemisphere inferred from three nuclear data sets
Q33208651	Phylogenetic and biogeographic diversification of Rhus (Anacardiaceae) in the Northern Hemisphere
Q34215082	Phylogenetic and epidemic modeling of rapidly evolving infectious diseases
Q35948379	Phylogenetic classification of yeasts and related taxa within Pucciniomycotina
Q33703375	Phylogenetic climatic niche conservatism and evolution of climatic suitability in Neotropical Angraecinae (Vandeae, Orchidaceae) and their closest African relatives.
Q37801983	Phylogenetic comparative approaches for studying niche conservatism.
Q31111097	Phylogenetic conservatism and climate factors shape flowering phenology in alpine meadows
Q39584555	Phylogenetic dispersion of host use in a tropical insect herbivore community
Q48323029	Phylogenetic estimates of diversification rate are affected by molecular rate variation.
Q38447908	Phylogenetic evidence for a major reversal of life-history evolution in plethodontid salamanders
Q47204656	Phylogenetic evidence for competitively driven divergence: body-size evolution in Caribbean treefrogs (Hylidae: Osteopilus).
Q28756258	Phylogenetic history underlies elevational biodiversity patterns in tropical salamanders
Q33499058	Phylogenetic origin of Phyllolobium with a further implication for diversification of Astragalus in China
Q28749366	Phylogenetic origins of the Himalayan endemic Dolomiaea, Diplazoptilon and Xanthopappus (Asteraceae: Cardueae) based on three DNA regions
Q54494805	Phylogenetic patterns and diversification in the caesalpinioid legumesThis paper is one of a selection of papers published in the Special Issue on Systematics Research.
Q21192752	Phylogenetic position of a whale-fall lancelet (Cephalochordata) inferred from whole mitochondrial genome sequences
Q55693108	Phylogenetic prediction of the maximum per capita rate of population growth.
Q29393179	Phylogenetic reconstruction and shell evolution of the Diplommatinidae (Gastropoda: Caenogastropoda)
Q46821253	Phylogenetic relationships and divergence time estimate of African anguilliform catfish (Siluriformes: Clariidae) inferred from ribosomal gene and spacer sequences
Q28728443	Phylogenetic relationships and the evolution of regulatory gene sequences in the parrotfishes
Q54539685	Phylogenetic relationships of Dalyat mirabilis Mateu, 2002, with a revised molecular phylogeny of ground beetles (Coleoptera, Carabidae)
Q43537336	Phylogenetic relationships of Loxosceles and Sicarius spiders are consistent with Western Gondwanan vicariance
Q47263596	Phylogenetic relationships, divergence time estimation, and global biogeographic patterns of calopterygoid damselflies (odonata, zygoptera) inferred from ribosomal DNA sequences
Q29041581	Phylogenetic relationships, diversification and biogeography in NeotropicalBrotogerisparakeets
Q39605794	Phylogenetic signal in diatom ecology: perspectives for aquatic ecosystems biomonitoring
Q29028803	Phylogenetic systematics and tempo of evolution of the Viverrinae (Mammalia, Carnivora, Viverridae) within feliformians: Implications for faunal exchanges between Asia and Africa
Q111629084	Phylogenetics and biogeography of eastern Asian-North American disjunct genus Pachysandra (Buxaceae) inferred from nucleotide sequences
Q21093416	Phylogenetics of Cucumis (Cucurbitaceae): cucumber (C. sativus) belongs in an Asian/Australian clade far from melon (C. melo)
Q99656999	Phylogenetics of modern shorebirds (Charadriiformes) based on phenotypic evidence: analysis and discussion
Q34239632	Phylogenetics of the millipede genus Brachycybe Wood, 1864 (Diplopoda: Platydesmida: Andrognathidae): patterns of deep evolutionary history and recent speciation
Q55871724	Phylogenetics, divergence times and diversification from three genomic partitions in monocots
Q47254487	Phylogenetics, species boundaries and timing of resource tracking in a highly specialized group of seed beetles (Coleoptera: Chrysomelidae: Bruchinae).
Q110697325	Phylogenomic analysis, reclassification, and evolution of South American nemesioid burrowing mygalomorph spiders
Q33556679	Phylogenomics and the dynamic genome evolution of the genus Streptococcus.
Q44868828	Phylogeny and Bayesian divergence time estimations of small-headed flies (Diptera: Acroceridae) using multiple molecular markers
Q28293911	Phylogeny and biogeography of Altingiaceae: evidence from combined analysis of five non-coding chloroplast regions
Q28757190	Phylogeny and biogeography of Cedrus (Pinaceae) inferred from sequences of seven paternal chloroplast and maternal mitochondrial DNA regions
Q31054642	Phylogeny and biogeography of Croton alabamensis (Euphorbiaceae), a rare shrub from Texas and Alabama, using DNA sequence and AFLP data
Q54557176	Phylogeny and biogeography of Sassafras (Lauraceae) disjunct between eastern Asia and eastern North America
Q39620047	Phylogeny and biogeography of exacum (gentianaceae): a disjunctive distribution in the Indian ocean basin resulted from long distance dispersal and extensive radiation
Q48693138	Phylogeny and biogeography of the alpine newt Mesotriton alpestris (Salamandridae, Caudata), inferred from mtDNA sequences
Q28282403	Phylogeny and divergence-date estimates of rapid radiations in muroid rodents based on multiple nuclear genes
Q54521626	Phylogeny and diversification of diving beetles (Coleoptera: Dytiscidae)
Q24563351	Phylogeny and diversification of the largest avian radiation
Q47281160	Phylogeny and evolutionary history of the blister beetles (Coleoptera, Meloidae).
Q42012569	Phylogeny and evolutionary history of the silkworm
Q46871190	Phylogeny and forelimb disparity in waterbirds
Q110697361	Phylogeny and secondary sexual trait evolution in Schizocosa wolf spiders (Araneae, Lycosidae) shows evidence for multiple gains and losses of ornamentation and species delimitation uncertainty
Q33257497	Phylogeny and temporal diversification of Calomys (Rodentia, Sigmodontinae): implications for the biogeography of an endemic genus of the open/dry biomes of South America
Q33966732	Phylogeny and temporal diversification of darters (Percidae: Etheostomatinae).
Q116205948	Phylogeny of Australasian agamid lizards based on nuclear and mitochondrial genes: implications for morphological evolution and biogeography
Q33251061	Phylogeny of Chaetanthera (Asteraceae: Mutisieae) reveals both ancient and recent origins of the high elevation lineages
Q28265426	Phylogeny of Dictyoptera: Dating the Origin of Cockroaches, Praying Mantises and Termites with Molecular Data and Controlled Fossil Evidence
Q28598220	Phylogeny of Elatinaceae and the Tropical Gondwanan Origin of the Centroplacaceae(Malpighiaceae, Elatinaceae) Clade
Q111741553	Phylogeny of Marsdenieae (Apocynaceae, Asclepiadoideae) based on chloroplast and nuclear loci, with a conspectus of the genera
Q22945802	Phylogeny of Opuntia s.s. (Cactaceae): Clade delineation, geographic origins, and reticulate evolution
Q33314190	Phylogeny of Paramysis (Crustacea: Mysida) and the origin of Ponto-Caspian endemic diversity: resolving power from nuclear protein-coding genes
Q28960294	Phylogeny of Salicornioideae (Chenopodiaceae): Diversification, Biogeography, and Evolutionary Trends in Leaf and Flower Morphology
Q31115141	Phylogeny of extant and fossil Juglandaceae inferred from the integration of molecular and morphological data sets
Q44117746	Phylogeny of iguanian lizards inferred from 29 nuclear loci, and a comparison of concatenated and species-tree approaches for an ancient, rapid radiation
Q59116331	Phylogeny, biogeography and classification of the snake superfamily Elapoidea: a rapid radiation in the late Eocene
Q42019472	Phylogeny, biogeography, and host-plant association in the subfamily Apaturinae (Insecta: Lepidoptera: Nymphalidae) inferred from eight nuclear and seven mitochondrial genes.
Q51721501	Phylogeny, divergence-time estimation, biogeography and social parasite-host relationships of the Holarctic ant genus Myrmica (Hymenoptera: Formicidae).
Q44015674	Phylogeny, diversification rates and species boundaries of Mesoamerican firs (Abies, Pinaceae) in a genus-wide context
Q28768918	Phylogeny, evolution, and biogeography of Asiatic Salamanders (Hynobiidae)
Q47211121	Phylogeny, historical biogeography, and patterns of diversification for Pinus (Pinaceae): phylogenetic tests of fossil-based hypotheses
Q35759962	Phylogeny, species delimitation and convergence in the South American bothriurid scorpion genus Brachistosternus Pocock 1893: Integrating morphology, nuclear and mitochondrial DNA.
Q54555400	Phylogeographic analysis of Pimoidae (Arachnida: Araneae) inferred from mitochondrial cytochrome c oxidase subunit I and nuclear 28S rRNA gene regions
Q39172277	Phylogeography and bindin evolution in Arbacia, a sea urchin genus with an unusual distribution.
Q34249345	Phylogeography of Rift Valley Fever virus in Africa reveals multiple introductions in Senegal and Mauritania
Q30814554	Phylogeography of a subterranean amphipod reveals cryptic diversity and dynamic evolution in extreme environments.
Q39031789	Phylogeography of the Bothrops jararaca complex (Serpentes: Viperidae): past fragmentation and island colonization in the Brazilian Atlantic Forest
Q39145586	Phylogeography of the ocellated skink Chalcides ocellatus (Squamata, Scincidae), with the use of mtDNA sequences: a hitch-hiker's guide to the Mediterranean
Q47302047	Phylogeography of two European newt species--discordance between mtDNA and morphology
Q46246935	Physalis and physaloids: A recent and complex evolutionary history
Q33997312	Pinniped phylogeny and a new hypothesis for their origin and dispersal
Q90721282	Placing the regionally threatened moss Orthodontium gracile in the big picture - Phylogeny, genome incongruence and anthropogenic dispersal in the order Orthodontiales
Q28754782	Plants with double genomes might have had a better chance to survive the Cretaceous-Tertiary extinction event
Q57227855	Pliocene forest dynamics as a primary driver of African bird speciation
Q43639266	Plumage evolution in relation to light environment in a novel clade of Neotropical tanagers
Q64233586	Population genetic structure and geographical variation in Neotricula aperta (Gastropoda: Pomatiopsidae), the snail intermediate host of Schistosoma mekongi (Digenea: Schistosomatidae)
Q28756016	Prehistorical climate change increased diversification of a group of butterflies
Q28742193	Primate extinction risk and historical patterns of speciation and extinction in relation to body mass
Q57237215	Processes driving male breeding colour and ecomorphological diversification in rainbow skinks: a phylogenetic comparative test
Q24645517	Progressive island colonization and ancient origin of Hawaiian Metrosideros (Myrtaceae)
Q28654446	Prospects for building large timetrees using molecular data with incomplete gene coverage among species
Q46671923	Puzzling rocks and complicated clocks: how to optimize molecular dating approaches in historical phytogeography
Q24600564	Quantitative prediction of molecular clock and ka/ks at short timescales
Q28185340	RAG-1 sequences resolve phylogenetic relationships within Charadriiform birds
Q57077581	RAPID CLADOGENESIS IN MARINE FISHES REVISITED
Q88874864	REPLICATE PATTERNS OF SPECIES RICHNESS, HISTORICAL BIOGEOGRAPHY, AND PHYLOGENY IN HOLARCTIC TREEFROGS
Q28284327	Radiation of extant cetaceans driven by restructuring of the oceans
Q42458220	Radiation of extant marsupials after the K/T boundary: evidence from complete mitochondrial genomes
Q28764843	Radiation of the Australian flora: what can comparisons of molecular phylogenies across multiple taxa tell us about the evolution of diversity in present-day communities?
Q38932785	Radiation, multiple dispersal and parallelism in the skinks, Chalcides and Sphenops (Squamata: Scincidae), with comments on Scincus and Scincopus and the age of the Sahara Desert.
Q44358738	Rampant host- and defensive phenotype-associated diversification in a goldenrod gall midge.
Q28709533	Rapid and recent world-wide diversification of bluegrasses (Poa, Poaceae) and related genera
Q21283874	Rapid and repeated limb loss in a clade of scincid lizards
Q33270876	Rapid diversification, incomplete isolation, and the "speciation clock" in North American salamanders (Genus Plethodon): testing the hybrid swarm hypothesis of rapid radiation
Q56228231	Rapid lineage accumulation in a non-adaptive radiation: phylogenetic analysis of diversification rates in eastern North American woodland salamanders (Plethodontidae: Plethodon)
Q33435723	Rapid radiation of Impatiens (Balsaminaceae) during Pliocene and Pleistocene: result of a global climate change.
Q33338225	Rates and patterns in the evolution of snake-like body form in squamate reptiles: evidence for repeated re-evolution of lost digits and long-term persistence of intermediate body forms
Q46001605	Rates of evolution of hybrid inviability in birds and mammals.
Q29618961	Rates of molecular evolution are linked to life history in flowering plants
Q44874707	Rates of nucleotide substitution in Cornaceae (Cornales)-Pattern of variation and underlying causal factors
Q30641520	Rates of speciation and morphological evolution are correlated across the largest vertebrate radiation.
Q28236332	Re-evolution of lost mandibular teeth in frogs after more than 200 million years, and re-evaluating Dollo's law
Q28750326	Reassessing the temporal evolution of orchids with new fossils and a Bayesian relaxed clock, with implications for the diversification of the rare South American genus Hoffmannseggella (Orchidaceae: Epidendroideae)
Q28763130	Recalibrated tree of leaf beetles (Chrysomelidae) indicates independent diversification of angiosperms and their insect herbivores
Q28766871	Recent and simultaneous origins of eusociality in halictid bees
Q21283939	Recent evolution of alternative reproductive modes in the 'living fossil' Triops cancriformis
Q38948432	Recent long-distance dispersal overshadows ancient biogeographical patterns in a pantropical angiosperm family (Simaroubaceae, Sapindales).
Q28727186	Recent progress in paleontological methods for dating the Tree of Life
Q33996502	Recently formed polyploid plants diversify at lower rates
Q54546616	Recognition of a species-poor, geographically restricted but morphologically diverse Cape lineage of diving beetles (Coleoptera: Dytiscidae: Hyphydrini)
Q28744431	Reconciling molecular phylogenies with the fossil record
Q28703889	Reconstructing the evolutionary history of transposable elements
Q39408118	Reconstructing the history of Campanulaceae with a Bayesian approach to molecular dating and dispersal-vicariance analyses.
Q33355186	Recurrent evolution of dioecy in bryophytes
Q35721159	Reduced mRNA secondary-structure stability near the start codon indicates functional genes in prokaryotes
Q45912237	Refugia, dispersal and divergence in a forest archipelago: a study of Streptocarpus in eastern South Africa.
Q44892750	Relationship between species co-occurrence and rate of morphological change in Percina darters (Percidae: Etheostomatinae).
Q51562076	Relative embryo length as an adaptation to habitat and life cycle in Apiaceae.
Q51585209	Relaxed clocks and inferences of heterogeneous patterns of nucleotide substitution and divergence time estimates across whales and dolphins (Mammalia: Cetacea).
Q21146382	Relaxed molecular clock provides evidence for long-distance dispersal of Nothofagus (southern beech)
Q34019219	Relaxed molecular clocks, the bias-variance trade-off, and the quality of phylogenetic inference
Q21146068	Relaxed phylogenetics and dating with confidence
Q28604209	Relaxing the Molecular Clock to Different Degrees for Different Substitution Types
Q28750225	Repeated climate-linked host shifts have promoted diversification in a temperate clade of leaf-mining flies
Q46261942	Repeated evolution and reversibility of self-fertilization in the volvocine green algae
Q24678024	Repeated evolution of net venation and fleshy fruits among monocots in shaded habitats confirms a priori predictions: evidence from an ndhF phylogeny
Q28754889	Repeated independent evolution of obligate pollination mutualism in the Phyllantheae-Epicephala association
Q36028824	Repeated invasions into the twilight zone: evolutionary origins of a novel assemblage of fishes from deep Caribbean reefs
Q21134514	Repeated origin and loss of adhesive toepads in geckos
Q117478758	Repeated parallel losses of inflexed stamens in Moraceae: Phylogenomics and generic revision of the tribe Moreae and the reinstatement of the tribe Olmedieae (Moraceae)
Q57227893	Repeated trans-Atlantic dispersal catalysed a global songbird radiation
Q28602804	Resolution of Brassicaceae Phylogeny Using Nuclear Genes Uncovers Nested Radiations and Supports Convergent Morphological Evolution
Q34750162	Resolving an ancient, rapid radiation in Saxifragales
Q33814019	Resolving and dating the phylogeny of Cornales--Effects of taxon sampling, data partitions, and fossil calibrations
Q92606325	Restriction-site associated DNA markers provide new insights into the evolutionary history of the bark beetle genus Dendroctonus
Q36315204	Retention of duplicated long-wavelength opsins in mosquito lineages by positive selection and differential expression
Q40113076	Reticulate evolution in Thuja inferred from multiple gene sequences: implications for the study of biogeographical disjunction between eastern Asia and North America
Q33595599	Reticulation, data combination, and inferring evolutionary history: an example from Danthonioideae (Poaceae).
Q91880128	Return to the Sea, Get Huge, Beat Cancer: An Analysis of Cetacean Genomes Including an Assembly for the Humpback Whale (Megaptera novaeangliae)
Q28661002	Rigorous approaches to species delimitation have significant implications for African crocodilian systematics and conservation
Q21092254	Robust time estimation reconciles views of the antiquity of placental mammals
Q29618902	Rocks and clocks: calibrating the Tree of Life using fossils and molecules
Q24651414	Rosid radiation and the rapid rise of angiosperm-dominated forests
Q28657953	Sequencing of chloroplast genomes from wheat, barley, rye and their relatives provides a detailed insight into the evolution of the Triticeae tribe
Q21136250	Serpentine Soils Do Not Limit Mycorrhizal Fungal Diversity
Q82378986	Serpentine soils promote ectomycorrhizal fungal diversity
Q64359227	Sexual Dichromatism Drives Diversification within a Major Radiation of African Amphibians
Q51550129	Sexual dichromatism in frogs: natural selection, sexual selection and unexpected diversity.
Q46253937	Sexual dimorphism, phenotypic integration, and the evolution of head structure in casque-headed lizards.
Q33474154	Sexual selection is involved in speciation in a land snail radiation on crete
Q92484446	Sexual selection, body mass and molecular evolution interact to predict diversification in birds
Q94481811	Shedding light: a phylotranscriptomic perspective illuminates the origin of photosymbiosis in marine bivalves
Q30720363	Shifts in climate foster exceptional opportunities for species radiation: the case of South african geraniums
Q40359282	Simplifying a wing: diversity and functional consequences of digital joint reduction in bat wings.
Q43975184	Simulating and detecting autocorrelation of molecular evolutionary rates among lineages
Q67213176	Simultaneous Bayesian inference of phylogeny and molecular coevolution
Q47325203	Single-copy nuclear genes recover cretaceous-age divergences in bees.
Q28661592	Size and shape in the evolution of ant worker morphology
Q37863752	Skyline-plot methods for estimating demographic history from nucleotide sequences
Q54998842	So many genes, so little time: A practical approach to divergence-time estimation in the genomic era.
Q21283919	Social complexity in bees is not sufficient to explain lack of reversions to solitary living over long time scales
Q111629663	Spatial phylogenetics of the North American flora
Q46273983	Spatial phylogenetics of the native California flora.
Q34070786	Spatial predictions of phylogenetic diversity in conservation decision making
Q59125424	Spatial scale-dependent phylogenetic signal in species distributions along geographic and elevation gradients in a mountainous rangeland
Q34132310	Spatially structured populations with a low level of cryptic diversity in European marine Gastrotricha
Q28960143	Spatio-Temporal Relationships of the Macaronesian Endemic Flora: A Relictual Series or Window of Opportunity?
Q33582618	Spatio-temporal patterns of genome evolution in allotetraploid species of the genus Oryza
Q35195390	Speciation and introgression between Mimulus nasutus and Mimulus guttatus
Q35626313	Speciation dynamics during the global radiation of extant bats.
Q56428702	Speciation inPararge(Satyrinae: Nymphalidae) butterflies - North Africa is the source of ancestral populations of allParargespecies
Q31030566	Speciation of Iberian diving beetles in Pleistocene refugia (Coleoptera, Dytiscidae).
Q46108206	Speciational evolution of coloration in the genus Carduelis
Q28743938	Species delimitation and phylogeography of Aphonopelma hentzi (Araneae, Mygalomorphae, Theraphosidae): cryptic diversity in North American tarantulas
Q33249970	Species diversification patterns in the Polynesian jumping spider genus Havaika Prószyński, 2001 (Araneae, Salticidae).
Q38935385	Species identification in the taxonomically neglected, highly diverse, neotropical parasitoid wasp genus Notiospathius (Braconidae: Doryctinae) based on an integrative molecular and morphological approach
Q36008472	Species introductions and the phylogenetic and functional structure of California's grasses
Q28603676	Spider phylogenomics: untangling the Spider Tree of Life
Q51684508	Steady Plio-Pleistocene diversification and a 2-million-year sympatry threshold in a New Zealand cicada radiation.
Q49913452	Step-wise evolution of complex chemical defenses in millipedes: a phylogenomic approach
Q42675429	Strategies for Partitioning Clock Models in Phylogenomic Dating: Application to the Angiosperm Evolutionary Timescale.
Q51595525	Strong influence of regional species pools on continent-wide structuring of local communities.
Q21245337	Strong mitochondrial DNA support for a Cretaceous origin of modern avian lineages
Q34570816	Structure and evolution of the r/b chromosomal regions in rice, maize and sorghum
Q51704905	Summarizing a posterior distribution of trees using agreement subtrees.
Q37153819	Surviving the K-T mass extinction: new perspectives of polyploidization in angiosperms
Q28776744	Synchronous coadaptation in an ancient case of herbivory
Q34441807	Synechococcus: 3 billion years of global dominance
Q28756929	Synteny and chromosome evolution in the lepidoptera: evidence from mapping in Heliconius melpomene
Q33513776	Systematics and biogeography of the Neotropical genus Mabuya, with special emphasis on the Amazonian skink Mabuya nigropunctata (Reptilia, Scincidae).
Q33234519	Systematics and historical biogeography of Greater Antillean Cichlidae
Q104454888	Systematics and historical biogeography of theAphanius disparspecies group (Teleostei: Aphaniidae) and description of a new species from Southern Iran
Q21185420	Systematics of the Neotropical caddisfly genus Notidobiella Schmid (Trichoptera, Sericostomatidae), with the description of 3 new species
Q39866962	TIMING DEEP DIVERGENCE EVENTS IN CALCAREOUS DINOFLAGELLATES(1).
Q28657578	Tangled up in two: a burst of genome duplications at the end of the Cretaceous and the consequences for plant evolution
Q92539268	Target Capture Sequencing Unravels Rubus Evolution
Q46487357	Taxon sampling effects in molecular clock dating: an example from the African Restionaceae
Q46836574	Tempo of hybrid inviability in centrarchid fishes (Teleostei: Centrarchidae).
Q28960148	Temporal and Spatial Diversification of Circum-Mediterranean Compositae-Anthemideae
Q90888037	Testing adaptive hypotheses on the evolution of larval life history in acorn and stalked barnacles
Q35980512	Testing the Relationships between Diversification, Species Richness, and Trait Evolution
Q45398526	Testing the directionality of evolution: the case of chydorid crustaceans
Q34112527	Testing the impact of calibration on molecular divergence times using a fossil-rich group: the case of Nothofagus (Fagales).
Q33246895	Testing the molecular clock: molecular and paleontological estimates of divergence times in the Echinoidea (Echinodermata).
Q28261893	That awkward age for butterflies: insights from the age of the butterfly subfamily Nymphalinae (Lepidoptera: Nymphalidae)
Q24653779	The Ediacaran emergence of bilaterians: congruence between the genetic and the geological fossil records
Q49028136	The Emergence of Earliest Angiosperms may be Earlier than Fossil Evidence Indicates
Q28606703	The First Mitogenome of the Cyprus Mouflon (Ovis gmelini ophion): New Insights into the Phylogeny of the Genus Ovis
Q57996328	The Great American Biotic Interchange revisited
Q22066011	The Impact of Fossils and Taxon Sampling on Ancient Molecular Dating Analyses
Q35579280	The Use of Bioinformatics for Studying HIV Evolutionary and Epidemiological History in South America
Q55877791	The age of major monocot groups inferred from 800+rbcL sequences
Q33220521	The age of the angiosperms: a molecular timescale without a clock
Q28755282	The assembly of montane biotas: linking Andean tectonics and climatic oscillations to independent regimes of diversification in Pionus parrots
Q56040935	The beetle tree of life reveals that Coleoptera survived end-Permian mass extinction to diversify during the Cretaceous terrestrial revolution
Q38912843	The biogeography and age of salticid spider radiations (Araneae: Salticidae).
Q21093249	The colonization of land by animals: molecular phylogeny and divergence times among arthropods
Q22065328	The complete plastid genome sequence of Welwitschia mirabilis: an unusually compact plastome with accelerated divergence rates
Q42630006	The complex evolutionary history of seeing red: molecular phylogeny and the evolution of an adaptive visual system in deep-sea dragonfishes (Stomiiformes: Stomiidae).
Q34706250	The drowning of New Zealand and the problem of Agathis
Q43027950	The east-west-north colonization history of the Mediterranean and Europe by the coastal plant Carex extensa (Cyperaceae).
Q46458544	The effect of spatial scale on relative influences of assembly processes in temperate stream fish assemblages
Q35036303	The evolution of body size, antennal size and host use in parasitoid wasps (Hymenoptera: Chalcidoidea): a phylogenetic comparative analysis
Q50103968	The evolution of relative trait size and shape: insights from the genitalia of dung beetles
Q28749576	The evolutionary history of the extinct ratite moa and New Zealand Neogene paleogeography
Q95279994	The evolutionary origins of the cat attractant nepetalactone in catnip
Q28742086	The evolutionary rate dynamically tracks changes in HIV-1 epidemics: application of a simple method for optimizing the evolutionary rate in phylogenetic trees with longitudinal data
Q47698968	The first mistletoes: origins of aerial parasitism in Santalales
Q42438018	The genus Coleodactylus (Sphaerodactylinae, Gekkota) revisited: a molecular phylogenetic perspective
Q28767179	The geological history of deep-sea colonization by echinoids: roles of surface productivity and deep-water ventilation
Q28742476	The historical biogeography of Mammalia
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Q28587319	The influence of habitat on the evolution of plants: a case study across Saxifragales
Q43498385	The influence of ignoring secondary structure on divergence time estimates from ribosomal RNA genes
Q28817688	The interplay between natural and sexual selection in the evolution of sexual size dimorphism in Sceloporus lizards (Squamata: Phrynosomatidae)
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Q30422644	The mercury resistance operon: from an origin in a geothermal environment to an efficient detoxification machine
Q34348209	The molecular phylogenetics of endangerment: cryptic variation and historical phylogeography of the California tiger salamander, Ambystoma californiense.
Q110697130	The molecular systematics and diversification of a taxonomically unstable group of Asian cicada tribes related to Cicadini Latreille, 1802 (Hemiptera : Cicadidae)
Q28654917	The necessity of DNA taxonomy to reveal cryptic diversity and spatial distribution of meiofauna, with a focus on Nemertea
Q21999008	The origin and diversification of angiosperms
Q28767419	The origin and diversification of eukaryotes: problems with molecular phylogenetics and molecular clock estimation
Q29618563	The origin and evolution of model organisms
Q43529920	The origin, evolution, and diversification of rockfishes of the genus Sebastes (Cuvier).
Q28299604	The pattern and timing of diversification of Philippine endemic rodents: evidence from mitochondrial and nuclear gene sequences
Q30983794	The phylogenetic history and biogeography of the frankincense and myrrh family (Burseraceae) based on nuclear and chloroplast sequence data
Q39148918	The phylogenetic utility of acetyltransferase (ARD1) and glutaminyl tRNA synthetase (QtRNA) for reconstructing Cenozoic relationships as exemplified by the large Australian cicada Pauropsalta generic complex
Q51917110	The phylogeny of the Pentaschistis clade (Danthonioideae, Poaceae) based on chloroplast DNA, and the evolution and loss of complex characters.
Q21198926	The phylogeography of Indoplanorbis exustus (Gastropoda: Planorbidae) in Asia
Q28749639	The relationships between xylem safety and hydraulic efficiency in the Cupressaceae: the evolution of pit membrane form and function
Q31147294	The relative importance of body size and paleoclimatic change as explanatory variables influencing lineage diversification rate: an evolutionary analysis of bullhead catfishes (Siluriformes: Ictaluridae).
Q28756061	The relative importance of ecology and geographic isolation for speciation in anoles
Q47288378	The role of biotic and abiotic factors in evolution of ant dispersal in the milkwort family (polygalaceae).
Q41442522	The role of geography and ecological opportunity in the diversification of day geckos (Phelsuma).
Q30959578	The role of morphological data in phylogeny reconstruction
Q28770095	The role of phylogenetics in comparative genetics
Q21283843	The root of the East African cichlid radiations
Q21188442	The taxonomy and diversity of Platerodrilus (Coleoptera, Lycidae) inferred from molecular data and morphology of adults and larvae
Q33500486	The timing of neotropical speciation dynamics: a reconstruction of Myiopagis flycatcher diversification using phylogenetic and paleogeographic data
Q100941111	The whole-genome sequencing and analysis of a Ganoderma lucidum strain provide insights into the genetic basis of its high triterpene content
Q55954495	ThepetDgroup II intron as a species level marker: utility for tree inference and species identification in the diverse genusCampanula (Campanulaceae)
Q91782338	Thermal Niche Differentiation in the Benthic Diatom Cylindrotheca closterium (Bacillariophyceae) Complex
Q58092849	Thirty clues to the exceptional diversification of flowering plants
Q34276079	Three genome-based phylogeny of Cupressaceae s.l.: further evidence for the evolution of gymnosperms and Southern Hemisphere biogeography
Q29547571	Time dependency of molecular rate estimates and systematic overestimation of recent divergence times
Q92840852	Timing and ecological priority shaped the diversification of sedges in the Himalayas
Q28768532	Timing and rate of speciation in Agave (Agavaceae)
Q39934766	Timing of morphological and ecological innovations in the cyanobacteria--a key to understanding the rise in atmospheric oxygen
Q46590240	Tiny worms from a mighty continent: high diversity and new phylogenetic lineages of African monogeneans
Q28651064	To move or to evolve: contrasting patterns of intercontinental connectivity and climatic niche evolution in "Terebinthaceae" (Anacardiaceae and Burseraceae).
Q47272838	Toward understanding the distribution of Laurasian frogs: a test of Savage's biogeographical hypothesis using the genus Bombina
Q28550549	Towards an integrated phylogenetic classification of the Tremellomycetes
Q21284096	Towards resolving Lamiales relationships: insights from rapidly evolving chloroplast sequences
Q39606807	Tracing an invasion: landbridges, refugia, and the phylogeography of the Neotropical rattlesnake (Serpentes: Viperidae: Crotalus durissus).
Q28754318	Tracing the impact of the Andean uplift on Neotropical plant evolution
Q28755245	Triassic origin and early radiation of multicellular volvocine algae
Q46728916	Turtle phylogeny: insights from a novel nuclear intron
Q47272038	Two chloroplast DNA inversions originated simultaneously during the early evolution of the sunflower family (Asteraceae).
Q28658966	Two new fern chloroplasts and decelerated evolution linked to the long generation time in tree ferns
Q28662094	Undersampling taxa will underestimate molecular divergence dates: an example from the South american lizard clade liolaemini
Q42667142	Understanding the spectacular failure of DNA barcoding in willows (Salix): does this result from a trans-specific selective sweep?
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Q34327659	Unraveling the evolutionary radiation of the thoracican barnacles using molecular and morphological evidence: a comparison of several divergence time estimation approaches
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Q46859060	Uplift of the Tibetan plateau: evidence from divergence times of glyptosternoid catfishes
Q30387664	Use of phylogenetics in the molecular epidemiology and evolutionary studies of viral infections
Q57657864	Using DNA taxonomy to investigate the ecological determinants of plankton diversity: explaining the occurrence of Synchaeta spp. (Rotifera, Monogononta) in mountain lakes
Q33398939	Using fossils and molecular data to reveal the origins of the Cape proteas (subfamily Proteoideae).
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Q30804393	Using multiple relaxed-clock models to estimate evolutionary timescales from DNA sequence data
Q30381140	Using non-homogeneous models of nucleotide substitution to identify host shift events: application to the origin of the 1918 'Spanish' influenza pandemic virus.
Q28484414	Using phylogenetic and coalescent methods to understand the species diversity in the Cladia aggregata complex (Ascomycota, Lecanorales)
Q22066318	Using plastid genome-scale data to resolve enigmatic relationships among basal angiosperms
Q89818403	Utility of targeted sequence capture for phylogenomics in rapid, recent angiosperm radiations: Neotropical Burmeistera bellflowers as a case study
Q44036979	Utility of the nuclear protein-coding gene, elongation factor-1 gamma (EF-1gamma), for spider systematics, emphasizing family level relationships of tarantulas and their kin (Araneae: Mygalomorphae).
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Q30573919	Waterscape genetics of the yellow perch (Perca flavescens): patterns across large connected ecosystems and isolated relict populations
Q36108793	What explains patterns of species richness? The relative importance of climatic-niche evolution, morphological evolution, and ecological limits in salamanders
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Q40680392	Widespread flower color convergence in Solanaceae via alternate biochemical pathways
Q28651633	Willis, K.J., McElwain, J.C. The evolution of plants
Q51628874	[FeFe]-hydrogenase in Yellowstone National Park: evidence for dispersal limitation and phylogenetic niche conservatism.
Q45078874	treePL: divergence time estimation using penalized likelihood for large phylogenies

P356	DOI	10.1093/OXFORDJOURNALS.MOLBEV.A003974
P3181	OpenCitations bibliographic resource ID	3277736
P698	PubMed publication ID	11752195

P2093	author name string	Sanderson MJ
		M. J. Sanderson
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P433	issue	1
P407	language of work or name	English	Q1860
P304	page(s)	101-9
		101-109
P577	publication date	2002-01-01
P1433	published in	Molecular Biology and Evolution	Q1992656
P1476	title	Estimating absolute rates of molecular evolution and divergence times: a penalized likelihood approach
		Estimating Absolute Rates of Molecular Evolution and Divergence Times: A Penalized Likelihood Approach
P478	volume	19

Estimating absolute rates of molecular evolution and divergence times: a penalized likelihood approach

scientific article (publication date: 2002)

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