Mitochondrial substitution rates are extraordinarily elevated and variable in a genus of flowering plants

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Mitochondrial substitution rates are extraordinarily elevated and variable in a genus of flowering plants is …
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P819ADS bibcode2004PNAS..10117741C
P356DOI10.1073/PNAS.0408302101
P932PMC publication ID539783
P698PubMed publication ID15598738
P5875ResearchGate publication ID8130693

P2093author name stringJeffrey P Mower
Jeffrey D Palmer
Yin-Long Qiu
Yangrae Cho
P2860cites workA Phylogeny of the Monocots, as Inferred from rbcL and atpA Sequence Variation, and a Comparison of Methods for Calculating Jackknife and Bootstrap ValuesQ54153226
Isolation and characterization of ten mutator alleles of the mitochondrial DNA polymerase-encoding MIP1 gene from Saccharomyces cerevisiae.Q54167823
Phylogenetic relationships within Plantago (Plantaginaceae): evidence from nuclear ribosomal ITS and plastid trnL-F sequence dataQ54555133
Plant mitochondrial DNA evolves rapidly in structure, but slowly in sequenceQ67244470
Evolutionary rates of insertion and deletion in noncoding nucleotide sequences of primatesQ72024410
Male-driven evolution of mitochondrial and chloroplastidial DNA sequences in plantsQ74181976
Plant genetics: gene transfer from parasitic to host plantsQ80989572
An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG IIQ14565069
Evolution of the angiosperms: calibrating the family treeQ24522462
Length mutations in human mitochondrial DNAQ24532158
Rapid evolution of animal mitochondrial DNAQ24597162
Mitochondrial DNA sequences reveal the photosynthetic relatives of Rafflesia, the world's largest flowerQ24627371
Phylogeny of seed plants based on all three genomic compartments: extant gymnosperms are monophyletic and Gnetales' closest relatives are conifersQ24682483
Seed plant phylogeny inferred from all three plant genomes: monophyly of extant gymnosperms and origin of Gnetales from conifersQ24682532
PAML: a program package for phylogenetic analysis by maximum likelihoodQ27861096
Disintegration of the scrophulariaceaeQ28202268
Mitochondrial DNA sequences of primates: Tempo and mode of evolutionQ28264694
RNA editing in plant mitochondria and chloroplastsQ28265454
Rates of nucleotide substitution vary greatly among plant mitochondrial, chloroplast, and nuclear DNAsQ28776549
r8s: inferring absolute rates of molecular evolution and divergence times in the absence of a molecular clockQ29547569
Estimating absolute rates of molecular evolution and divergence times: a penalized likelihood approachQ29547754
A molecular phylogeny of the Littorininae (Gastropoda: Littorinidae): unequal evolutionary rates, morphological parallelism, and biogeography of the Southern OceanQ30802238
Laser beams: knotted threads of darknessQ31126800
Escherichia coli mutator genesQ33539352
Massive horizontal transfer of mitochondrial genes from diverse land plant donors to the basal angiosperm AmborellaQ33582720
Examining rates and patterns of nucleotide substitution in plantsQ33845473
Nucleotide substitution rate of mammalian mitochondrial genomesQ33855171
Evolution of the mitochondrial rps3 intron in perennial and annual angiosperms and homology to nad5 intron 1.Q33862423
Yeast mitochondrial DNA mutators with deficient proofreading exonucleolytic activityQ33938120
Dynamic evolution of plant mitochondrial genomes: mobile genes and introns and highly variable mutation ratesQ33946950
Punctuated evolution of mitochondrial gene content: high and variable rates of mitochondrial gene loss and transfer to the nucleus during angiosperm evolutionQ34097870
Synonymous and nonsynonymous rate variation in nuclear genes of mammals.Q34463955
Slow mitochondrial DNA sequence evolution in the Anthozoa (Cnidaria).Q35009623
Molecular evolution of angiosperm mitochondrial introns and exonsQ36157569
Rate and mode differences between nuclear and mitochondrial small-subunit rRNA genes in mushroomsQ44743921
Spontaneous mutators in bacteria: insights into pathways of mutagenesis and repairQ46617407
Relative rates of nucleotide substitution in frogsQ47239869
Characterization of mitochondrial small-subunit ribosomal RNAs from holoparasitic plantsQ48040265
Correlated rates of synonymous site evolution across plant genomesQ48052073
Broad-scale analysis contradicts the theory that generation time affects molecular evolutionary rates in plants.Q50714220
Dramatically elevated rate of mitochondrial substitution in lice (Insecta: Phthiraptera).Q53869317
P433issue51
P407language of work or nameEnglishQ1860
P921main subjectmitochondrionQ39572
P304page(s)17741-17746
P577publication date2004-12-14
P1433published inProceedings of the National Academy of Sciences of the United States of AmericaQ1146531
P1476titleMitochondrial substitution rates are extraordinarily elevated and variable in a genus of flowering plants
P478volume101

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cites work (P2860)
Q28960293300,000 Species to Identify: Problems, Progress, and Prospects in DNA Barcoding of Land Plants
Q30004200A two-locus global DNA barcode for land plants: the coding rbcL gene complements the non-coding trnH-psbA spacer region
Q34959662Accelerated rate of molecular evolution for vittarioid ferns is strong and not driven by selection.
Q21245361An exceptional horizontal gene transfer in plastids: gene replacement by a distant bacterial paralog and evidence that haptophyte and cryptophyte plastids are sisters
Q57005873Analytical approaches for DNA barcoding data – how to find a way for plants?
Q46789051Are mini DNA-barcodes sufficiently informative to resolve species identities? An in silico analysis using Phyllanthus
Q33744400Are substitution rates and RNA editing correlated?
Q28757542Asymmetric postmating isolation: Darwin's corollary to Haldane's rule
Q35642042Bar-HRM for Authentication of Plant-Based Medicines: Evaluation of Three Medicinal Products Derived from Acanthaceae Species
Q34971977Barcoding poplars (Populus L.) from western China
Q37738686Causes and consequences of rapidly evolving mtDNA in a plant lineage
Q51993494Characterization of the regulatory and expression context of an alternative oxidase gene provides insights into cyanide-insensitive respiration during growth and development.
Q35076798Comparative analyses of two Geraniaceae transcriptomes using next-generation sequencing
Q36286644Comparative mitogenomics indicates respiratory competence in parasitic Viscum despite loss of complex I and extreme sequence divergence, and reveals horizontal gene transfer and remarkable variation in genome size
Q31024833Complete chloroplast genome sequence of Magnolia kwangsiensis (Magnoliaceae): implication for DNA barcoding and population genetics
Q49185553Complete mitochondrial genome sequence of the "copper moss" Mielichhoferia elongata reveals independent nad7 gene functionality loss
Q51617102Complex evolutionary transitions and the significance of c(3)-c(4) intermediate forms of photosynthesis in Molluginaceae.
Q59281250Conservation of Endangered Wild Harvested Medicinal Plants: Use of DNA Barcoding
Q36469817Conservative and compensatory evolution in oxidative phosphorylation complexes of angiosperms with highly divergent rates of mitochondrial genome evolution
Q41510650Contrasting Patterns of Nucleotide Substitution Rates Provide Insight into Dynamic Evolution of Plastid and Mitochondrial Genomes of Geranium
Q92093355Convergent horizontal gene transfer and cross-talk of mobile nucleic acids in parasitic plants
Q35664352DNA Barcoding and Pharmacovigilance of Herbal Medicines.
Q92703199DNA Repair and the Stability of the Plant Mitochondrial Genome
Q28960331DNA Sequence Evolution in Fast Evolving Mitochondrial DNA nad1 Exons in Geraniaceae and Plantaginaceae
Q24652866DNA barcodes: genes, genomics, and bioinformatics
Q28756762DNA barcoding in the cycadales: testing the potential of proposed barcoding markers for species identification of cycads
Q38404859DNA barcoding reveals limited accuracy of identifications based on folk taxonomy.
Q35069283DNA barcoding the Canadian Arctic flora: core plastid barcodes (rbcL + matK) for 490 vascular plant species
Q34222101Deciduous trees and the application of universal DNA barcodes: a case study on the circumpolar Fraxinus
Q33345277Do recent findings in plant mitochondrial molecular and population genetics have implications for the study of gynodioecy and cytonuclear conflict?
Q47246003Effective population size and tests of neutrality at cytoplasmic genes in Arabidopsis
Q37416178Efficient Identification of the Forest Tree Species in Aceraceae Using DNA Barcodes.
Q88664459Employing hypothesis testing and data from multiple genomic compartments to resolve recalcitrant backbone nodes in Goodenia s.l. (Goodeniaceae)
Q47786658Evolution of an ancient microsatellite hotspot in the conifer mitochondrial genome and comparison with other plants
Q28645658Evolutionary Stasis in Cycad Plastomes and the First Case of Plastome GC-Biased Gene Conversion
Q46638826Evolutionary dynamics of the plastid inverted repeat: the effects of expansion, contraction, and loss on substitution rates
Q30431238Extensive loss of RNA editing sites in rapidly evolving Silene mitochondrial genomes: selection vs. retroprocessing as the driving force
Q100569631Extensive variation in nucleotide substitution rate and gene/intron loss in mitochondrial genomes of Pelargonium
Q33293738Extensive variation in synonymous substitution rates in mitochondrial genes of seed plants.
Q34134941Extreme reconfiguration of plastid genomes in the angiosperm family Geraniaceae: rearrangements, repeats, and codon usage
Q40242283Forensically informative nucleotide sequencing (FINS) for the authentication of Chinese medicinal materials
Q36990845Frequent, geographically structured heteroplasmy in the mitochondria of a flowering plant, ribwort plantain (Plantago lanceolata).
Q37306539Frequent, phylogenetically local horizontal transfer of the cox1 group I Intron in flowering plant mitochondria.
Q38288370Geneious! Simplified genome skimming methods for phylogenetic systematic studies: A case study in Oreocarya (Boraginaceae).
Q42716507Generation and evolutionary fate of insertions of organelle DNA in the nuclear genomes of flowering plants
Q42718035Genes and junk in plant mitochondria-repair mechanisms and selection
Q36985095Genome-wide analyses of Geraniaceae plastid DNA reveal unprecedented patterns of increased nucleotide substitutions
Q35910694Ginkgo and Welwitschia Mitogenomes Reveal Extreme Contrasts in Gymnosperm Mitochondrial Evolution
Q34572872Gradual disintegration of the floral symmetry gene network is implicated in the evolution of a wind-pollination syndrome
Q37649147Heteroplasmy and stoichiometric complexity of plant mitochondrial genomes--though this be madness, yet there's method in't.
Q36501296Heteroplasmy as a common state of mitochondrial genetic information in plants and animals
Q59793185Homologous recombination changes the context of Cytochrome b transcription in the mitochondrial genome of Silene vulgaris KRA
Q33777554Horizontal acquisition of multiple mitochondrial genes from a parasitic plant followed by gene conversion with host mitochondrial genes.
Q34393252Horizontal transfer of entire genomes via mitochondrial fusion in the angiosperm Amborella.
Q111629194Identification of herbal medicinal materials using DNA barcodes
Q46904815Identification of species in the angiosperm family Apiaceae using DNA barcodes
Q40832509Implications of mutation of organelle genomes for organelle function and evolution
Q64895310In Silico Analyses of Burial Codon Bias Among the Species of Dipterocarpaceae Through Molecular and Phylogenetic Data.
Q24810858Lineage-specific variations of congruent evolution among DNA sequences from three genomes, and relaxed selective constraints on rbcL in Cryptomonas (Cryptophyceae).
Q42647297Linear Plasmids and the Rate of Sequence Evolution in Plant Mitochondrial Genomes.
Q34341633Localized hypermutation and associated gene losses in legume chloroplast genomes
Q58609714Microsatellite Repeats in Mitochondrial Genomes
Q28960327Mitochondrial DNA Sequences in Plant Phylogenetics and Evolution: Symposium at XVII IBC, Vienna, Austria
Q45453001Mitochondrial DNA capture and divergence in Pinus provide new insights into the evolution of the genus
Q21283920Mitochondrial DNA suggests at least 11 origins of parasitism in angiosperms and reveals genomic chimerism in parasitic plants
Q47243402Mitochondrial Mutation Rate, Spectrum and Heteroplasmy in Caenorhabditis elegans Spontaneous Mutation Accumulation Lines of Differing Population Size
Q35641487Mitochondrial genome sequence evolution in Chlamydomonas
Q46329442Mitochondrial heteroplasmy and paternal leakage in natural populations of Silene vulgaris, a gynodioecious plant
Q46947712Modeling sites of RNA editing as a fifth nucleotide state reveals progressive loss of edited sites from angiosperm mitochondria
Q28727909Molecular identification of commercialized medicinal plants in southern Morocco
Q34181477Mosaic origins of a complex chimeric mitochondrial gene in Silene vulgaris
Q25257157Multiple major increases and decreases in mitochondrial substitution rates in the plant family Geraniaceae
Q33356060Multiple multilocus DNA barcodes from the plastid genome discriminate plant species equally well
Q34029246Multiple recent horizontal transfers of the cox1 intron in Solanaceae and extended co-conversion of flanking exons
Q55879327New universal mitochondrial PCR markers reveal new information on maternal citrus phylogeny
Q28768191No variation and low synonymous substitution rates in coral mtDNA despite high nuclear variation
Q35221611Nonneutral evolution of organelle genes in Silene vulgaris
Q35253487On the adaptive value of cytoplasmic genomes in plants
Q41903302Organellar Genomes from a ∼5,000-Year-Old Archaeological Maize Sample Are Closely Related to NB Genotype
Q24792689PREP-Mt: predictive RNA editor for plant mitochondrial genes
Q33730952Paleogenomic analysis of the short arm of chromosome 3 reveals the history of the African and Asian progenitors of cultivated rices
Q38129423Paternal leakage, heteroplasmy, and the evolution of plant mitochondrial genomes
Q96303390Patterns and Rates of Plastid rps12 Gene Evolution Inferred in a Phylogenetic Context using Plastomic Data of Ferns
Q33250261Pervasive survival of expressed mitochondrial rps14 pseudogenes in grasses and their relatives for 80 million years following three functional transfers to the nucleus
Q36346518Photosynthesis in reproductive structures: costs and benefits
Q21283833Phylogenetic analysis of mitochondrial substitution rate variation in the angiosperm tribe Sileneae
Q91179944Phylogeny and evolutionary history of Pinaceae updated by transcriptomic analysis
Q57613075Phylogeny of the Liliales (Monocotyledons) with special emphasis on data partition congruence and RNA editing
Q34032255Phylogeny, rate variation, and genome size evolution of Pelargonium (Geraniaceae).
Q28727980Pitfalls of establishing DNA barcoding systems in protists: the cryptophyceae as a test case
Q36974627Plant mitochondrial genome evolution can be explained by DNA repair mechanisms
Q41073688Potential DNA barcodes for Melilotus species based on five single loci and their combinations
Q28960330RNA Editing and Phylogenetic Reconstruction in Two Monocot Mitochondrial Genes
Q21563526Rapid evolution of enormous, multichromosomal genomes in flowering plant mitochondria with exceptionally high mutation rates
Q34137652Rapid sequencing of the bamboo mitochondrial genome using Illumina technology and parallel episodic evolution of organelle genomes in grasses
Q118110141Rate accelerations in plastid and mitochondrial genomes of Cyperaceae occur in the same clades
Q36338148Rate heterogeneity in six protein-coding genes from the holoparasite Balanophora (Balanophoraceae) and other taxa of Santalales
Q24801952Rate variation in parasitic plants: correlated and uncorrelated patterns among plastid genes of different function
Q30427500Recent acceleration of plastid sequence and structural evolution coincides with extreme mitochondrial divergence in the angiosperm genus Silene.
Q28960328Reconstructing the Basal Angiosperm Phylogeny: Evaluating Information Content of Mitochondrial Genes
Q35809250Services of DNA barcoding in different fields
Q28714391Species replacement along a linear coastal habitat: phylogeography and speciation in the red alga Mazzaella laminarioides along the south east Pacific
Q38884699Spontaneous Chloroplast Mutants Mostly Occur by Replication Slippage and Show a Biased Pattern in the Plastome of Oenothera.
Q35185578Structural and content diversity of mitochondrial genome in beet: a comparative genomic analysis
Q30450703Testing for selection on synonymous sites in plant mitochondrial DNA: the role of codon bias and RNA editing
Q111629279Testing four candidate barcoding markers in temperate woody bamboos (Poaceae: Bambusoideae)
Q111629195Testing the potential of proposed DNA barcodes for species identification of Zingiberaceae
Q28705183The "fossilized" mitochondrial genome of Liriodendron tulipifera: ancestral gene content and order, ancestral editing sites, and extraordinarily low mutation rate
Q93011699The alternative reality of plant mitochondrial DNA: One ring does not rule them all
Q67213137The application of high-throughput sequencing for taxonomy: The case of Plantago subg. Plantago (Plantaginaceae)
Q28658002The changing epitome of species identification - DNA barcoding
Q34700391The complete sequence of the mitochondrial genome of Butomus umbellatus--a member of an early branching lineage of monocotyledons
Q53017107The discriminatory transfer routes of tRNA genes among organellar and nuclear genomes in flowering plants: a genome-wide investigation of indica rice.
Q37102645The effect of breeding system on polymorphism in mitochondrial genes of Silene.
Q37310294The functional transfer of genes from the mitochondria to the nucleus: the effects of selection, mutation, population size and rate of self-fertilization
Q42656950The mitochondrial genome of a cytoplasmic male sterile line of perennial ryegrass (Lolium perenne L.) contains an integrated linear plasmid-like element
Q48106519The rice mitochondrial genomes and their variations
Q30586742Tuning a ménage à trois: co-evolution and co-adaptation of nuclear and organellar genomes in plants.
Q46929140Unprecedented heterogeneity in the synonymous substitution rate within a plant genome
Q24529100Use of DNA barcodes to identify flowering plants
Q38366606Using plants to elucidate the mechanisms of cytonuclear co-evolution
Q28748574Variation in DNA substitution rates among lineages erroneously inferred from simulated clock-like data
Q21144362Whole-gene positive selection, elevated synonymous substitution rates, duplication, and indel evolution of the chloroplast clpP1 gene

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