KEGG orthology-based annotation of the predicted proteome of Acropora digitifera: ZoophyteBase - an open access and searchable database of a coral genome.

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KEGG orthology-based annotation of the predicted proteome of Acropora digitifera: ZoophyteBase - an open access and searchable database of a coral genome. is …
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P6179Dimensions Publication ID1008208593
P356DOI10.1186/1471-2164-14-509
P932PMC publication ID3750612
P698PubMed publication ID23889801
P5875ResearchGate publication ID253331792

P50authorRanko GacesaQ54963529
Paul F. LongQ54963530
Madeleine J. H. van OppenQ59468335
P2093author name stringWalter C Dunlap
Antonio Starcevic
Damir Baranasic
Daslav Hranueli
John Cullum
Jurica Zucko
Janko Diminic
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EST analysis of the cnidarian Acropora millepora reveals extensive gene loss and rapid sequence divergence in the model invertebratesQ75184249
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Induction of mixed-function oxygenase system and antioxidant enzymes in the coral Montastraea faveolata on acute exposure to benzo(a)pyreneQ79508380
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Molecular identification of Rab7 (ApRab7) in Aiptasia pulchella and its exclusion from phagosomes harboring zooxanthellaeQ30975981
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Effects of temperature on gene expression in embryos of the coral Montastraea faveolataQ33520524
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A post-synaptic scaffold at the origin of the animal kingdomQ21092252
Pre-bilaterian origins of the Hox cluster and the Hox code: evidence from the sea anemone, Nematostella vectensisQ21144467
Surprising complexity of the ancestral apoptosis networkQ21184136
BLAST+: architecture and applicationsQ21284368
The Sorcerer II Global Ocean Sampling Expedition: metagenomic characterization of viruses within aquatic microbial samplesQ21562303
Sea Anemone Genome Reveals Ancestral Eumetazoan Gene Repertoire and Genomic OrganizationQ22065873
Ancient origins of axial patterning genes: Hox genes and ParaHox genes in the CnidariaQ22121947
Using the Acropora digitifera genome to understand coral responses to environmental changeQ22122171
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Cnidarian chemical neurotransmission, an updated overviewQ22252324
EUKARYOTIC CYTOSINE METHYLTRANSFERASESQ22255656
Origins of neurogenesis, a cnidarian viewQ22337303
Coral Reefs Under Rapid Climate Change and Ocean AcidificationQ24289133
Climate change, coral bleaching and the future of the world's coral reefsQ24289280
Negative control of p53 by Sir2alpha promotes cell survival under stressQ24291828
The ubiquitin-proteasome proteolytic pathway: destruction for the sake of constructionQ24292709
ISG20, a new interferon-induced RNase specific for single-stranded RNA, defines an alternative antiviral pathway against RNA genomic virusesQ24295036
Sirt5 is a NAD-dependent protein lysine demalonylase and desuccinylaseQ24296766
Human interferon consensus sequence binding protein is a negative regulator of enhancer elements common to interferon-inducible genesQ24299229
Hydroxylation of 5-methylcytosine by TET1 promotes active DNA demethylation in the adult brainQ24299862
The coral probiotic hypothesisQ34581864
Light-responsive cryptochromes from a simple multicellular animal, the coral Acropora milleporaQ34583953
The role of microorganisms in coral health, disease and evolutionQ34612195
Functional and ecological impacts of horizontal gene transfer in eukaryotesQ34613589
Helicobacter pylori and the pathogenesis of gastroduodenal inflammationQ34631374
Transcriptomic evidence for the expression of horizontally transferred algal nuclear genes in the photosynthetic sea slug, Elysia chloroticaQ34635761
High natural gene expression variation in the reef-building coral Acropora millepora: potential for acclimative and adaptive plasticityQ34658850
NAD+-dependent SIRT1 deacetylase participates in epigenetic reprogramming during endotoxin toleranceQ34684804
Metagenomic analysis of the microbial community associated with the coral Porites astreoides.Q34699516
A phylogenomic investigation into the origin of metazoa.Q34734376
Characterization of the core elements of the NF-κB signaling pathway of the sea anemone Nematostella vectensisQ34742275
Sirt7 increases stress resistance of cardiomyocytes and prevents apoptosis and inflammatory cardiomyopathy in miceQ34743879
A global map of human impact on marine ecosystemsQ34750346
Bacillus cereus Nhe is a pore-forming toxin with structural and functional properties similar to the ClyA (HlyE, SheA) family of haemolysins, able to induce osmotic lysis in epitheliaQ34756817
Biosynthesis of the iron-molybdenum cofactor of nitrogenaseQ34772814
Diversification of animal venom peptides-were jellyfish amongst the first combinatorial chemists?Q34791268
Jellyfish vision starts with cAMP signaling mediated by opsin-G(s) cascadeQ34843867
Molecular mechanisms of proteasome assemblyQ34928594
Interferons and viral infectionsQ34968625
Evolution of opsins and phototransductionQ35000476
The give-and-take of DNA: horizontal gene transfer in plantsQ35012667
Apoptosis and the selective survival of host animals following thermal bleaching in zooxanthellate coralsQ35049093
Active DNA demethylation mediated by DNA glycosylasesQ35108672
The bacterial universal stress protein: function and regulationQ35121914
Regulation of Membrane Transport by rab GTPasesQ35128572
Rab and ARF GTPase regulation of exocytosisQ35173256
Genomic and proteomic analyses of the coral pathogen Vibrio coralliilyticus reveal a diverse virulence repertoireQ35178339
Early central nervous system evolution: an era of skin brains?Q35190133
Herpesvirus entry: an updateQ35217323
The role of integration host factor in gene expression in Escherichia coliQ35536633
Proteasomes and molecular chaperones: cellular machinery responsible for folding and destruction of unfolded proteinsQ35544930
Global gene repression by KaiC as a master process of prokaryotic circadian systemQ35554622
Diversity of metalloproteinases in Bothrops neuwiedi snake venom transcripts: evidences for recombination between different classes of SVMPsQ35554915
Simulation of the diffusion and reaction of endogenously produced nitric oxideQ35684444
Defining the tipping point: a complex cellular life/death balance in corals in response to stressQ39871857
Carbonic anhydrase in the scleractinian coral Stylophora pistillata: characterization, localization, and role in biomineralizationQ39962844
Nitrogen control in bacteriaQ40056285
Is There a Relationship between DNA Methylation and Phenotypic Plasticity in Invertebrates?Q40092693
Cilia and flagella of eukaryotesQ40219468
Combinatorial transcription of herpes simplex virus and varicella zoster virus immediate early genes is strictly determined by the cellular coactivator HCF-1.Q40496550
Molecular cloning and localization of a PMCA P-type calcium ATPase from the coral Stylophora pistillata.Q40553145
The toxin-co-regulated pilus of Vibrio cholerae O1: a model for type 4 pilus biogenesis?Q40625802
The molecular cell biology of interferon-gamma and its receptorQ40898233
DAP-kinase participates in TNF-alpha- and Fas-induced apoptosis and its function requires the death domainQ40942632
Enumerating viruses in coral mucusQ41863332
Characterization of a latent virus-like infection of symbiotic zooxanthellaeQ42015163
Terrestrial discharge into the Great Barrier Reef Lagoon: nutrient behavior in coastal watersQ42026153
Expression of hsp70, hsp90 and hsf1 in the reef coral Acropora digitifera under prospective acidified conditions over the next several decadesQ42175832
Metamorphosis of Hydractinia echinata (Cnidaria) is caspase-dependentQ42487228
Nitric oxide and cnidarian bleaching: an eviction notice mediates breakdown of a symbiosisQ42497592
Uncovering the evolutionary history of innate immunity: the simple metazoan Hydra uses epithelial cells for host defenceQ42603390
The integration host factor stimulates interaction of RNA polymerase with NIFA, the transcriptional activator for nitrogen fixation operons.Q42633651
The genome of S-PM2, a "photosynthetic" T4-type bacteriophage that infects marine Synechococcus strainsQ42653849
Phylogenomics reveals an anomalous distribution of USP genes in metazoansQ42669588
ApRab11, a cnidarian homologue of the recycling regulatory protein Rab11, is involved in the establishment and maintenance of the Aiptasia-Symbiodinium endosymbiosisQ42673510
Purification of the human immunodeficiency virus type 1 enhancer and TAR binding proteins EBP-1 and UBP-1.Q42735234
The Genetic and Molecular Basis for Sunscreen Biosynthesis in CyanobacteriaQ42760859
Characterization of the role of para-aminobenzoic acid biosynthesis in folate production by Lactococcus lactisQ42845836
The molecular cell death machinery in the simple cnidarian Hydra includes an expanded caspase family and pro- and anti-apoptotic Bcl-2 proteinsQ43060932
Heavy metal concentrations in growth bands of corals: a record of mine tailings input through time (Marinduque Island, Philippines).Q43360900
Bioinformatic analysis of ClpS, a protein module involved in prokaryotic and eukaryotic protein degradationQ44307965
Arabidopsis proteins containing similarity to the universal stress protein domain of bacteria.Q44367276
Coral-associated bacterial assemblages: current knowledge and the potential for climate-driven impactsQ44559898
The type III secretion chaperone FlgN regulates flagellar assembly via a negative feedback loop containing its chaperone substrates FlgK and FlgL.Q44563376
The complex NOD-like receptor repertoire of the coral Acropora digitifera includes novel domain combinations.Q44584354
Anatomy and development of the nervous system of Nematostella vectensis, an anthozoan cnidarianQ44652267
Genomic survey of candidate stress-response genes in the estuarine anemone Nematostella vectensisQ44694741
Uncoupled viral and bacterial distributions in coral reef waters of Tuamotu Archipelago (French Polynesia).Q44763418
Uric acid deposits in symbiotic marine algaeQ44899759
Catalytic formation of a nitrogenase iron-sulfur clusterQ45087538
A new metabolic pathway of arsenite: arsenic-glutathione complexes are substrates for human arsenic methyltransferase Cyt19.Q45139003
Coral mucus functions as an energy carrier and particle trap in the reef ecosystem.Q45179097
The influenza virus NS1 protein: a novel inhibitor of pre-mRNA splicingQ45345426
Hydra and the evolution of apoptosisQ45377741
An ancient and variable mannose-binding lectin from the coral Acropora millepora binds both pathogens and symbionts.Q45927176
P-glycoprotein (multi-xenobiotic resistance) and heat shock protein gene expression in the reef coral Montastraea franksi in response to environmental toxicants.Q45980420
A new coral carbonic anhydrase in Stylophora pistillataQ46091326
Ecology. Photosymbiosis and the evolution of modern coral reefsQ46281794
Cloning of a calcium channel alpha1 subunit from the reef-building coral, Stylophora pistillata.Q46291240
Biochemical responses of cnidarian larvae to mercury and benzo(a)pyrene exposureQ46344049
Connecting threads: epigenetics and metabolismQ46493363
Symbiotic Hydra express a plant-like peroxidase gene during oogenesisQ46508408
The high light-inducible polypeptides stabilize trimeric photosystem I complex under high light conditions in Synechocystis PCC 6803.Q46575745
Visual ecology and functional morphology of cubozoa (cnidaria).Q46621360
Development of a coral cDNA array to examine gene expression profiles in Montastraea faveolata exposed to environmental stressQ46663409
Heat stress stimulates nitric oxide production in Symbiodinium microadriaticum: a possible linkage between nitric oxide and the coral bleaching phenomenonQ46727075
Synthesis and biological evaluation of novel, peripherally selective chromanyl imidazolethione-based inhibitors of dopamine beta-hydroxylase.Q46922569
The Drosophila formin DAAM regulates the tracheal cuticle pattern through organizing the actin cytoskeleton.Q46937541
Early evolution of the LIM homeobox gene family.Q33524888
Immune defenses of healthy, bleached and diseased Montastraea faveolata during a natural bleaching eventQ33525966
What are the physiological and immunological responses of coral to climate warming and disease?Q33535153
Water quality as a regional driver of coral biodiversity and macroalgae on the Great Barrier ReefQ33570811
The susceptibility and resilience of corals to thermal stress: adaptation, acclimatization or both?Q33573967
Hox specificity unique roles for cofactors and collaboratorsQ33607453
Environmental sensing and response genes in cnidaria: the chemical defensome in the sea anemone Nematostella vectensis.Q33609122
The Arabidopsis thaliana RPM1 disease resistance gene product is a peripheral plasma membrane protein that is degraded coincident with the hypersensitive responseQ33618105
DNA demethylationQ33642025
Light entrained rhythmic gene expression in the sea anemone Nematostella vectensis: the evolution of the animal circadian clockQ33705288
Control of alpha-herpesvirus IE gene expression by HCF-1 coupled chromatin modification activitiesQ33729222
Gene Expression in the Scleractinian Acropora microphthalma Exposed to High Solar Irradiance Reveals Elements of Photoprotection and Coral BleachingQ33754356
Regulation of apoptotic mediators reveals dynamic responses to thermal stress in the reef building coral Acropora milleporaQ33808939
The circadian clock of cyanobacteriaQ33825351
The FtsJ/RrmJ heat shock protein of Escherichia coli is a 23 S ribosomal RNA methyltransferaseQ33896727
Evolution of two-component signal transduction systemsQ33898396
Metallochaperones, an intracellular shuttle service for metal ionsQ33902264
Cytochrome P4501A (CYP1A) in teleostean fishes. A review of immunohistochemical studies.Q33913957
Live tissue imaging shows reef corals elevate pH under their calcifying tissue relative to seawaterQ33921048
Zonula occludens toxin structure-function analysis. Identification of the fragment biologically active on tight junctions and of the zonulin receptor binding domainQ33940406
The Closest Unicellular Relatives of AnimalsQ33962095
Transcriptional control of the hydrogen cyanide biosynthetic genes hcnABC by the anaerobic regulator ANR and the quorum-sensing regulators LasR and RhlR in Pseudomonas aeruginosaQ33995036
Circadian cycles of gene expression in the coral, Acropora milleporaQ34031911
The IAP family: endogenous caspase inhibitors with multiple biological activitiesQ34060208
The role of vitrification in anhydrobiosisQ34066346
Production of a reference transcriptome and transcriptomic database (PocilloporaBase) for the cauliflower coral, Pocillopora damicornisQ34086057
Temperature regulation of virulence factors in the pathogen Vibrio coralliilyticusQ34096522
Cytolytic peptide and protein toxins from sea anemones (Anthozoa: Actiniaria).Q34100019
Corals shed bacteria as a potential mechanism of resilience to organic matter enrichmentQ34108080
Gene discovery in the threatened elkhorn coral: 454 sequencing of the Acropora palmata transcriptomeQ34116949
Role of Yersinia murine toxin in survival of Yersinia pestis in the midgut of the flea vectorQ34125533
Algal genes in the closest relatives of animalsQ34125837
The assembly and intermolecular properties of the hsp70-Hop-hsp90 molecular chaperone complexQ34142667
Coral reef primary productivity. A hierarchy of pattern and processQ34158829
SIRT2 deacetylates FOXO3a in response to oxidative stress and caloric restrictionQ28591910
Hypoxia-inducible factor-2 (HIF-2) regulates hepatic erythropoietin in vivoQ28594830
The Chlamydomonas kinesin-like protein FLA10 is involved in motility associated with the flagellar membraneQ28608940
Anthrax toxin edema factor: a bacterial adenylate cyclase that increases cyclic AMP concentrations of eukaryotic cellsQ28609196
Defining the limits of physiological plasticity: how gene expression can assess and predict the consequences of ocean changeQ28730011
Major cellular and physiological impacts of ocean acidification on a reef building coralQ28730641
Development of gene expression markers of acute heat-light stress in reef-building corals of the genus PoritesQ28743449
Symbiosis as an adaptive process and source of phenotypic complexityQ28757671
The cnidarian-bilaterian ancestor possessed at least 56 homeoboxes: evidence from the starlet sea anemone, Nematostella vectensisQ28763796
More than just orphans: are taxonomically-restricted genes important in evolution?Q29028224
SNAREs--engines for membrane fusionQ29547230
Perceptions of epigeneticsQ29547310
Mitochondrial formation of reactive oxygen speciesQ29547906
Sea anemone (Cnidaria, Anthozoa, Actiniaria) toxins: an overviewQ26825180
Epigenetic regulation of histone H3 serine 10 phosphorylation status by HCF-1 proteins in C. elegans and mammalian cellsQ27302346
RNA methylation under heat shock controlQ27626992
Crystal structure of the L protein of Rhodobacter sphaeroides light-independent protochlorophyllide reductase with MgADP bound: a homologue of the nitrogenase Fe proteinQ27652890
X-ray crystal structure of the light-independent protochlorophyllide reductaseQ27660601
Contribution of the hydrophobic effect to the stability of human lysozyme: calorimetric studies and X-ray structural analyses of the nine valine to alanine mutantsQ27734742
Structures of the reduced and mercury-bound forms of MerP, the periplasmic protein from the bacterial mercury detoxification systemQ27739306
Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal OmegaQ27860809
The language of covalent histone modificationsQ27860931
Identification and characterization of MAVS, a mitochondrial antiviral signaling protein that activates NF-kappaB and IRF 3Q27861127
The yeast antiviral proteins Ski2p, Ski3p, and Ski8p exist as a complex in vivoQ27931202
The ATX1 gene of Saccharomyces cerevisiae encodes a small metal homeostasis factor that protects cells against reactive oxygen toxicityQ27935318
The SLP1 gene of Saccharomyces cerevisiae is essential for vacuolar morphogenesis and functionQ27936760
Evidence that the SKI antiviral system of Saccharomyces cerevisiae acts by blocking expression of viral mRNA.Q27936790
Protein interactions regulating vesicle transport between the endoplasmic reticulum and Golgi apparatus in mammalian cellsQ28116211
The ciliary neurotrophic factor and its receptor, CNTFR alphaQ28144474
Carbamoyl phosphate synthetase: an amazing biochemical odyssey from substrate to productQ28201803
Wnt/Frizzled activation of Rho regulates vertebrate gastrulation and requires a novel Formin homology protein Daam1Q28214701
Voltage-gated calcium channelsQ28242997
Viral photosynthetic reaction center genes and transcripts in the marine environmentQ28258970
Disease incidence is related to bleaching extent in reef-building coralsQ28263468
Anthropogenic ocean acidification over the twenty-first century and its impact on calcifying organismsQ28274651
The multifunctional NS1 protein of influenza A virusesQ28294201
Molecular bases for circadian clocksQ28297151
Feedback of the Drosophila period gene product on circadian cycling of its messenger RNA levelsQ28297806
Interferon-induced Mx proteins in antiviral host defenseQ28306408
Copper chaperone for superoxide dismutase is essential to activate mammalian Cu/Zn superoxide dismutaseQ28343973
Intramolecular regulation of phosphorylation status of the circadian clock protein KaiCQ28472072
Characterisation of nitric oxide synthase in three cnidarian-dinoflagellate symbiosesQ28473791
Identification of a novel GTPase, the inducibly expressed GTPase, that accumulates in response to interferon gammaQ28505888
Genomic instability and aging-like phenotype in the absence of mammalian SIRT6Q28509079
IRF family of transcription factors as regulators of host defenseQ28513569
Mammalian BarH homologue is a potential regulator of neural bHLH genesQ28583629
Extensive and continuous duplication facilitates rapid evolution and diversification of gene familiesQ34160034
Cold induces acute stress but heat is ultimately more deleterious for the reef-building coral Acropora yongeiQ34166688
Initiation of RPS2-specified disease resistance in Arabidopsis is coupled to the AvrRpt2-directed elimination of RIN4.Q34176705
Cnidocyte discharge is regulated by light and opsin-mediated phototransductionQ34184960
Sensitivity of calcification to thermal stress varies among genera of massive reef-building coralsQ34187300
The staphylococcal enterotoxins and their relatives.Q34209384
The UniProtKB/Swiss-Prot Tox-Prot program: A central hub of integrated venom protein dataQ34215495
Marine ecosystems: bacterial photosynthesis genes in a virusQ34222352
Venom evolution through gene duplicationsQ34250277
Lim homeobox genes and the CNS: a close relationshipQ34275324
Heat-shock proteins as regulators of apoptosisQ34282224
Independent regulation of Hsp70 and Hsp90 chaperones by Hsp70/Hsp90-organizing protein Sti1 (Hop1).Q34293593
Divergent seven transmembrane receptors are candidate chemosensory receptors in C. elegans.Q34297493
The versatile bacterial type IV secretion systemsQ34307587
Unique nucleocytoplasmic dsDNA and +ssRNA viruses are associated with the dinoflagellate endosymbionts of coralsQ34335127
The function of heat-shock proteins in stress tolerance: degradation and reactivation of damaged proteinsQ34336799
Novel heat shock protein HspQ stimulates the degradation of mutant DnaA protein in Escherichia coliQ34371900
PcarnBase: development of a transcriptomic database for the brain coral Platygyra carnosusQ34372063
UV incites diverse levels of DNA breaks in different cellular compartments of a branching coral speciesQ34401309
Dishevelled-associated activator of morphogenesis 1 (Daam1) is required for heart morphogenesisQ34422795
The making of a photosynthetic animal.Q34433912
Cnidarians and ancestral genetic complexity in the animal kingdomQ34442695
Enumeration and biomass estimation of planktonic bacteria and viruses by transmission electron microscopy.Q34444251
Maintenance of ancestral complexity and non-metazoan genes in two basal cnidariansQ34459750
Deep venomics reveals the mechanism for expanded peptide diversity in cone snail venomQ34477088
PIDD mediates NF-kappaB activation in response to DNA damageQ34477303
Stabilization against thermal inactivation promoted by sugars on enzyme structure and function: why is trehalose more effective than other sugars?Q34481100
Gene expression profiles of cytosolic heat shock proteins Hsp70 and Hsp90 from symbiotic dinoflagellates in response to thermal stress: possible implications for coral bleachingQ34505897
High abundance of viruses found in aquatic environments.Q34538292
The diversity of the DnaJ/Hsp40 family, the crucial partners for Hsp70 chaperonesQ24301591
Amisyn, a novel syntaxin-binding protein that may regulate SNARE complex assemblyQ24302367
Interferon regulatory factor 1 binding to p300 stimulates DNA-dependent acetylation of p53Q24310030
Expression cloning of an interferon-inducible 17-kDa membrane protein implicated in the control of cell growthQ24310582
The copper chaperone for superoxide dismutaseQ24311669
Nitric oxide synthase (NOS)-interacting protein interacts with neuronal NOS and regulates its distribution and activityQ24315835
Daxx, a Novel Fas-Binding Protein That Activates JNK and ApoptosisQ24316216
Programmed cell death 6 (PDCD6) protein interacts with death-associated protein kinase 1 (DAPk1): additive effect on apoptosis via caspase-3 dependent pathwayQ24319124
Activation of MDA5 requires higher-order RNA structures generated during virus infectionQ24321400
Sirtuin 1 modulates cellular responses to hypoxia by deacetylating hypoxia-inducible factor 1alphaQ24338422
Clostridium difficile toxins: mechanism of action and role in diseaseQ24522454
A putative cell surface receptor for anemia-inducing feline leukemia virus subgroup C is a member of a transporter superfamilyQ24527277
Elucidation of eukaryotic elongation factor-2 contact sites within the catalytic domain of Pseudomonas aeruginosa exotoxin AQ24530754
Genomic analysis of uncultured marine viral communitiesQ24540367
Transfer of photosynthesis genes to and from Prochlorococcus virusesQ24563371
The enigma of caspase-2: the laymen's viewQ24595653
HMMER web server: interactive sequence similarity searchingQ24603071
The chemical defensome: environmental sensing and response genes in the Strongylocentrotus purpuratus genomeQ24605756
Transcriptomic evidence that longevity of acquired plastids in the photosynthetic slugs Elysia timida and Plakobranchus ocellatus does not entail lateral transfer of algal nuclear genesQ24629190
Reactivity of thioredoxin as a protein thiol-disulfide oxidoreductaseQ24630110
SIRT4 Regulates Fatty Acid Oxidation and Mitochondrial Gene Expression in Liver and Muscle CellsQ24633565
Structural genomics of histone tail recognitionQ24634351
The peroxiredoxin repair proteinsQ24652194
Symbiosis as a source of selectable epigenetic variation: taking the heat for the big guyQ24653370
Horizontal gene transfer of the algal nuclear gene psbO to the photosynthetic sea slug Elysia chloroticaQ24656238
Molecular model of a type III secretion system needle: Implications for host-cell sensingQ24670035
In vivo participation of red chlorophyll catabolite reductase in chlorophyll breakdownQ24680365
Microbial diversity in the deep sea and the underexplored "rare biosphere"Q24685531
Arsenate reductases in prokaryotes and eukaryotes.Q24812431
Ecotopic viral integration site 1 (EVI1) regulates multiple cellular processes important for cancer and is a synergistic partner for FOS protein in invasive tumorsQ35750824
The innate immune repertoire in cnidaria--ancestral complexity and stochastic gene loss.Q35850325
Disabling surveillance: bacterial type III secretion system effectors that suppress innate immunityQ35911179
An elaborate classification of SNARE proteins sheds light on the conservation of the eukaryotic endomembrane systemQ35949003
Recognition models to predict DNA-binding specificities of homeodomain proteinsQ36022098
Cell biology of cnidarian-dinoflagellate symbiosis.Q36023287
Molecular and evolutionary basis of the cellular stress responseQ36041011
Effects of terrestrial runoff on the ecology of corals and coral reefs: review and synthesisQ36057400
Distribution and diversity of archaeal ammonia monooxygenase genes associated with coralsQ36092376
Heat shock factors: integrators of cell stress, development and lifespan.Q36109403
The Clp proteins: proteolysis regulators or molecular chaperones?Q36117847
Nitrogenase metalloclusters: structures, organization, and synthesisQ36123210
Expression of ClpB, an analog of the ATP-dependent protease regulatory subunit in Escherichia coli, is controlled by a heat shock sigma factor (sigma 32).Q36148966
Flagellar transcriptional activators FlbB and FlaI: gene sequences and 5' consensus sequences of operons under FlbB and FlaI controlQ36199169
A profile of an endosymbiont-enriched fraction of the coral Stylophora pistillata reveals proteins relevant to microbial-host interactions.Q36209091
Making light work of enzyme catalysis: protochlorophyllide oxidoreductaseQ36267126
Endocrine disruptors in the marine environment: mechanisms of toxicity and their influence on reproductive processes in fishQ36314427
The interferon response circuit: induction and suppression by pathogenic virusesQ36346824
HspX-mediated protection against tuberculosis depends on its chaperoning of a mycobacterial moleculeQ36439241
Apoptosomes: protease activation platforms to die fromQ36440670
Post-genomic approaches to understanding the mechanisms of environmentally induced phenotypic plasticity.Q36491470
Enzymes of the shikimic acid pathway encoded in the genome of a basal metazoan, Nematostella vectensis, have microbial origins.Q36497362
The Aer protein and the serine chemoreceptor Tsr independently sense intracellular energy levels and transduce oxygen, redox, and energy signals for Escherichia coli behaviorQ36588351
The role of mitochondria in apoptosis*.Q36602674
Antiviral actions of interferon interferon-regulated cellular proteins and their surprisingly selective antiviral activitiesQ36656593
Fate, transport, and biodegradation of natural estrogens in the environment and engineered systemsQ36672977
An apoptosis-inhibiting baculovirus gene with a zinc finger-like motifQ36686481
Regulation of virulence in Vibrio cholerae: the ToxR regulonQ36895783
Identification and characterization of the Epstein-Barr virus receptor on human B lymphocytes and its relationship to the C3d complement receptor (CR2)Q36903213
ClpX(P) generates mechanical force to unfold and translocate its protein substratesQ36938901
Metagenomic analysis indicates that stressors induce production of herpes-like viruses in the coral Porites compressa.Q36976329
Overexpression of SIRT1 protects pancreatic beta-cells against cytokine toxicity by suppressing the nuclear factor-kappaB signaling pathwayQ37066873
Cell-to-cell signaling and Pseudomonas aeruginosa infectionsQ37092561
Two types of alpha-factor receptor determinants for pheromone specificity in the mating-incompatible yeasts S. cerevisiae and S. kluyveriQ73144281
Highly conserved caspase and Bcl-2 homologues from the sea anemone Aiptasia pallida: lower metazoans as models for the study of apoptosis evolutionQ47201365
Host-Zooxanthella Interactions in Four Temperate Marine Invertebrate Symbioses: Assessment of Effect of Host Extracts on SymbiontsQ47217137
The NK homeobox gene cluster predates the origin of Hox genesQ47800232
FlhB regulates ordered export of flagellar components via autocleavage mechanismQ47844679
A "neural" enzyme in nonbilaterian animals and algae: preneural origins for peptidylglycine α-amidating monooxygenase.Q47914033
NITRATE REDUCTASE STRUCTURE, FUNCTION AND REGULATION: Bridging the Gap between Biochemistry and PhysiologyQ47974282
Expression of a gene cluster kaiABC as a circadian feedback process in cyanobacteria.Q48025745
Differential operation of dual protochlorophyllide reductases for chlorophyll biosynthesis in response to environmental oxygen levels in the cyanobacterium Leptolyngbya boryanaQ48084242
Molecular cloning of Rab5 (ApRab5) in Aiptasia pulchella and its retention in phagosomes harboring live zooxanthellaeQ48168231
Discovery of symbiotic nitrogen-fixing cyanobacteria in coralsQ48177526
Cholera toxin transcriptional activator toxR is a transmembrane DNA binding proteinQ48350458
New tricks with old genes: the genetic bases of novel cnidarian traits.Q48664198
Arrested apoptosis of nurse cells during Hydra oogenesis and embryogenesisQ48824421
Long-wavelength photosensitivity in coral planula larvaeQ50247009
Microarray analysis reveals transcriptional plasticity in the reef building coral Acropora millepora.Q50590705
Hydrogenase/ferredoxin charge-transfer complexes: effect of hydrogenase mutations on the complex association.Q50598931
In vitro activity of C-20 methyltransferase, BchU, involved in bacteriochlorophyll c biosynthetic pathway in green sulfur bacteria.Q50773768
Proteomic characterisation of toxins isolated from nematocysts of the South Atlantic jellyfish Olindias sambaquiensis.Q50979518
Photosystem II proteins PsbL and PsbJ regulate electron flow to the plastoquinone pool.Q51023466
The 60-kDa heat shock protein (HSP60) of the sea anemone Anemonia viridis: a potential early warning system for environmental changes.Q51038987
Nervous systems of the sea anemone Nematostella vectensis are generated by ectoderm and endoderm and shaped by distinct mechanisms.Q51836937
Development and heat stress-induced transcriptomic changes during embryogenesis of the scleractinian coral Acropora palmata.Q51914022
Neuronal evolution: analysis of regulatory genes in a first-evolved nervous system, the hydra nervous system.Q52087736
Differential dysregulation of nitric oxide production in macrophages with targeted disruptions in IFN regulatory factor-1 and -2 genes.Q52519312
Transcriptome analysis of the circadian regulatory network in the coral Acropora millepora.Q52697076
Apoptosis as a post-phagocytic winnowing mechanism in a coral-dinoflagellate mutualism.Q53425895
Differential effects of copper on three species of scleractinian corals and their algal symbionts (Symbiodinium spp.).Q54445541
Molecular ChaperonesQ56144364
Bone Marrow Stromal Cell Antigen 2 Is a Specific Marker of Type I IFN-Producing Cells in the Naive Mouse, but a Promiscuous Cell Surface Antigen following IFN StimulationQ57275870
Lateral Gene Transfer of a Multigene Region from Cyanobacteria to Dinoflagellates Resulting in a Novel Plastid-Targeted Fusion ProteinQ57789541
Viruses: agents of coral disease?Q57889840
How calpain is activated by calciumQ58484409
Complex Diel Cycles of Gene Expression in Coral-Algal SymbiosisQ59739170
A multilocus, temperature stress-related gene expression profile assay in Acropora millepora, a dominant reef-building coralQ60248159
Uptake and partitioning of copper and cadmium in the coral Pocillopora damicornisQ60360660
Effects of the multiple stressors copper and reduced salinity on the metabolism of the hermatypic coral Porites luteaQ60484762
Hypoxia-Inducible Factor-1 (HIF-1)Q61645733
Apoptosis and autophagy as mechanisms of dinoflagellate symbiont release during cnidarian bleaching: every which way you lose.Q64993867
Electron transport to nitrogenase. Purification and characterization of pyruvate:flavodoxin oxidoreductase. The nifJ gene productQ70282888
Alpha-crystallin, a molecular chaperone, forms a stable complex with carbonic anhydrase upon heat denaturationQ72211695
Induction of 70-kD heat shock protein in scleractinian corals by elevated temperature: significance for coral bleachingQ72234710
Kinesin-related proteins in eukaryotic flagellaQ72809808
Vesicular trafficking: molecular tools and targetsQ37120420
Type IV secretion systems: tools of bacterial horizontal gene transfer and virulenceQ37189773
The colorful history of active DNA demethylation.Q37201774
The tektin family of microtubule-stabilizing proteinsQ37232117
Viral communities associated with healthy and bleaching coralsQ37242866
Increased light intensity induces heat shock protein Hsp60 in coral speciesQ37308865
Biochemical and molecular characterisation of cubozoan protein toxins.Q37397850
The adenylyl cyclase activity of anthrax edema factorQ37439070
The Bordetella type III secretion system effector BteA contains a conserved N-terminal motif that guides bacterial virulence factors to lipid raftsQ37457083
Role of KaiC phosphorylation in the circadian clock system of Synechococcus elongatus PCC 7942.Q37535587
The phylum Cnidaria and investigations of its toxins and venoms until 1990.Q37540886
SIRT1-dependent regulation of chromatin and transcription: linking NAD(+) metabolism and signaling to the control of cellular functionsQ37625383
Evolution and function of innate immune receptors--insights from marine invertebratesQ37726725
RNase II: the finer details of the Modus operandi of a molecular killerQ37756456
Oxygenomics in environmental stress.Q37769295
Bone Morphogenetic Proteins: A critical reviewQ37801468
Epigenetic contribution to stress adaptation in plantsQ37859508
Cnidarian immunity: a tale of two barriers.Q37870122
Uncovering the role of 5-hydroxymethylcytosine in the epigenomeQ37956118
Cell biology of the chloroplast symbiosis in sacoglossan sea slugsQ37976510
Neglected biological features in cnidarians self-nonself recognitionQ37991593
Escherichia coli toxin/antitoxin pair MqsR/MqsA regulate toxin CspD.Q38346935
Cloning and characterization of ApRab4, a recycling Rab protein of Aiptasia pulchella, and its implication in the symbiosome biogenesisQ38353892
ApRab3, a biosynthetic Rab protein, accumulates on the maturing phagosomes and symbiosomes in the tropical sea anemone, Aiptasia pulchellaQ39075917
Corals form characteristic associations with symbiotic nitrogen-fixing bacteriaQ39170324
Regulation of numbers of intracellular algaeQ39254017
Roles of calmodulin and calcium/calmodulin-dependent protein kinase in flagellar motility regulation in the coral Acropora digitiferaQ39269609
Unraveling toxicological mechanisms and predicting toxicity classes with gene dysregulation networksQ39298842
A comparative study of phenoloxidase activity in diseased and bleached colonies of the coral Acropora milleporaQ39334896
Photoreactivation is the main repair pathway for UV-induced DNA damage in coral planulaeQ39389559
Oxidative stress and apoptotic events during thermal stress in the symbiotic sea anemone, Anemonia viridisQ39397329
Evolutionary conservation of methyl-accepting chemotaxis protein location in Bacteria and ArchaeaQ39501378
Reconstitution of Rab- and SNARE-dependent membrane fusion by synthetic endosomes.Q39848704
P407language of work or nameEnglishQ1860
P921main subjectopen dataQ309901
Acropora digitiferaQ3942202
P304page(s)509
P577publication date2013-07-26
P1433published inBMC GenomicsQ15765854
P1476titleKEGG orthology-based annotation of the predicted proteome of Acropora digitifera: ZoophyteBase - an open access and searchable database of a coral genome
P478volume14

Reverse relations

cites work (P2860)
Q35228329Bimodal signatures of germline methylation are linked with gene expression plasticity in the coral Acropora millepora
Q46709445CORAL REEFS. Genomic determinants of coral heat tolerance across latitudes
Q36826356Changes to coral health and metabolic activity under oxygen deprivation
Q41272236De novo metatranscriptome assembly and coral gene expression profile of Montipora capitata with growth anomaly.
Q36775679Developmental Progression in the Coral Acropora digitifera Is Controlled by Differential Expression of Distinct Regulatory Gene Networks
Q28603183Distribution of CpG Motifs in Upstream Gene Domains in a Reef Coral and Sea Anemone: Implications for Epigenetics in Cnidarians
Q34333555Diversity and evolution of myxozoan minicollagens and nematogalectins
Q28606389Gene duplications are extensive and contribute significantly to the toxic proteome of nematocysts isolated from Acropora digitifera (Cnidaria: Anthozoa: Scleractinia)
Q35588285Gene expression associated with white syndromes in a reef building coral, Acropora hyacinthus
Q31004127Germline DNA methylation in reef corals: patterns and potential roles in response to environmental change.
Q35794863Host Coenzyme Q Redox State Is an Early Biomarker of Thermal Stress in the Coral Acropora millepora
Q33903073Identification of long non-coding RNAs in two anthozoan species and their possible implications for coral bleaching
Q27000040Microbes in the coral holobiont: partners through evolution, development, and ecological interactions
Q41714468O-Methyltransferase is shared between the pentose phosphate and shikimate pathways and is essential for mycosporine-like amino acid biosynthesis in Anabaena variabilis ATCC 29413.
Q57901759Prevalent and persistent viral infection in cultures of the coral algal endosymbiont Symbiodinium
Q41621464Proteomics links the redox state to calcium signaling during bleaching of the scleractinian coral Acropora microphthalma on exposure to high solar irradiance and thermal stress
Q35939268RNA-Seq of the Caribbean reef-building coral Orbicella faveolata (Scleractinia-Merulinidae) under bleaching and disease stress expands models of coral innate immunity
Q90014238Reciprocal transplantation of the heterotrophic coral Tubastraea coccinea (Scleractinia: Dendrophylliidae) between distinct habitats did not alter its venom toxin composition
Q28601318Rising levels of atmospheric oxygen and evolution of Nrf2
Q28650352The genetics of colony form and function in Caribbean Acropora corals
Q91651786Transcriptome Analysis Reveals Key Pathways and Hormone Activities Involved in Early Microtuber Formation of Dioscorea opposita
Q28649666Transcriptome profiling of the dynamic life cycle of the scypohozoan jellyfish Aurelia aurita
Q40711225Transcriptomic differences between day and night in Acropora millepora provide new insights into metabolite exchange and light-enhanced calcification in corals
Q36756602Unfolding the secrets of coral-algal symbiosis
Q36250240Virus-host interactions and their roles in coral reef health and disease

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