| scholarly article | Q13442814 |
| P6179 | Dimensions Publication ID | 1012626351 |
| P356 | DOI | 10.1186/GB-2006-7-11-R108 |
| P932 | PMC publication ID | 1794588 |
| P698 | PubMed publication ID | 17107606 |
| P5875 | ResearchGate publication ID | 6689381 |
| P50 | author | Jens Nielsen | Q16733372 |
| Ana Paula Oliveira | Q47502281 | ||
| P2093 | author name string | Gerald Hofmann | |
| Hanne Jarmer | |||
| Helga David | |||
| P2860 | cites work | Genomic sequence of the pathogenic and allergenic filamentous fungus Aspergillus fumigatus | Q21972844 |
| Sequencing of Aspergillus nidulans and comparative analysis with A. fumigatus and A. oryzae | Q22122464 | ||
| Genome sequencing and analysis of Aspergillus oryzae | Q22122467 | ||
| Genome-scale reconstruction of the Saccharomyces cerevisiae metabolic network | Q24561581 | ||
| A high performance test of differential gene expression for oligonucleotide arrays | Q24792904 | ||
| A new non-linear normalization method for reducing variability in DNA microarray experiments | Q24803818 | ||
| Exploring the metabolic and genetic control of gene expression on a genomic scale | Q27860705 | ||
| Model-based analysis of oligonucleotide arrays: expression index computation and outlier detection | Q27860727 | ||
| Exploration, normalization, and summaries of high density oligonucleotide array probe level data | Q27861098 | ||
| Growth-rate regulated genes have profound impact on interpretation of transcriptome profiling in Saccharomyces cerevisiae | Q28419084 | ||
| Aspergillus nidulans HOG pathway is activated only by two-component signalling pathway in response to osmotic stress | Q30160244 | ||
| Elucidation of the metabolic fate of glucose in the filamentous fungus Trichoderma reesei using expressed sequence tag (EST) analysis and cDNA microarrays | Q30806566 | ||
| Use of expressed sequence tag analysis and cDNA microarrays of the filamentous fungus Aspergillus nidulans | Q31036677 | ||
| Identification of genes differentially expressed during aflatoxin biosynthesis in Aspergillus flavus and Aspergillus parasiticus | Q31144267 | ||
| Regulation of the aldehyde dehydrogenase gene (aldA) and its role in the control of the coinducer level necessary for induction of the ethanol utilization pathway in Aspergillus nidulans | Q31644831 | ||
| In vivo and in vitro analyses of the AmyR binding site of the Aspergillus nidulans agdA promoter; requirement of the CGG direct repeat for induction and high affinity binding of AmyR | Q62674185 | ||
| Glycerol catabolism in Aspergillus nidulans | Q62693786 | ||
| Transcriptome analysis of recombinant protein secretion by Aspergillus nidulans and the unfolded-protein response in vivo | Q33769853 | ||
| Uncovering transcriptional regulation of metabolism by using metabolic network topology | Q33863545 | ||
| Ethanol catabolism in Aspergillus nidulans: a model system for studying gene regulation | Q34364455 | ||
| From genomes to in silico cells via metabolic networks | Q34427006 | ||
| Missing genes in metabolic pathways: a comparative genomics approach | Q35114448 | ||
| The orlA gene from Aspergillus nidulans encodes a trehalose-6-phosphate phosphatase necessary for normal growth and chitin synthesis at elevated temperatures | Q36820020 | ||
| The facC gene of Aspergillus nidulans encodes an acetate-inducible carnitine acetyltransferase | Q39568749 | ||
| Osmotic adjustment in the filamentous fungus Aspergillus nidulans | Q39961890 | ||
| Compatible solutes protect against chaotrope (ethanol)-induced, nonosmotic water stress | Q40408905 | ||
| Reconstruction of the central carbon metabolism of Aspergillus niger | Q40549061 | ||
| Carbon repression in Aspergilli | Q41536068 | ||
| Glycerol dehydrogenase, encoded by gldB is essential for osmotolerance in Aspergillus nidulans | Q42443593 | ||
| FacB, the Aspergillus nidulans activator of acetate utilization genes, binds dissimilar DNA sequences | Q42641932 | ||
| Modeling hybridoma cell metabolism using a generic genome-scale metabolic model of Mus musculus | Q42657070 | ||
| Robust multi-scale clustering of large DNA microarray datasets with the consensus algorithm | Q42672157 | ||
| Characterization of the amyR gene encoding a transcriptional activator for the amylase genes in Aspergillus nidulans | Q43585639 | ||
| Trehalose is required for the acquisition of tolerance to a variety of stresses in the filamentous fungus Aspergillus nidulans | Q43655753 | ||
| Physiological characterisation of recombinant Aspergillus nidulans strains with different creA genotypes expressing A. oryzae alpha-amylase | Q43786606 | ||
| The distinctiveness of ATP:citrate lyase from Aspergillus nidulans | Q43992122 | ||
| Isomaltose formed by alpha-glucosidases triggers amylase induction in Aspergillus nidulans | Q44208058 | ||
| Integrating transcriptional and metabolite profiles to direct the engineering of lovastatin-producing fungal strains. | Q44283791 | ||
| The Aspergillus nidulans metR gene encodes a bZIP protein which activates transcription of sulphur metabolism genes | Q44531846 | ||
| Transcriptional analysis of genes for energy catabolism and hydrolytic enzymes in the filamentous fungus Aspergillus oryzae using cDNA microarrays and expressed sequence tags | Q44954649 | ||
| Neutral trehalases catalyse intracellular trehalose breakdown in the filamentous fungi Aspergillus nidulans and Neurospora crassa | Q47965343 | ||
| Molecular characterization of the Aspergillus nidulans treA gene encoding an acid trehalase required for growth on trehalose. | Q48051678 | ||
| Genetic and molecular characterization of a gene encoding a wide specificity purine permease of Aspergillus nidulans reveals a novel family of transporters conserved in prokaryotes and eukaryotes | Q48074518 | ||
| A systems biology approach to study glucose repression in the yeast Saccharomyces cerevisiae. | Q52572537 | ||
| Nitrogen metabolite repression in Aspergillus nidulans | Q54154831 | ||
| Specific binding sites in the alcR and alcA promoters of the ethanol regulon for the CREA repressor mediating carbon catabolite repression in Aspergillus nidulans. | Q54660920 | ||
| Catalase activity is necessary for heat-shock recovery in Aspergillus nidulans germlings | Q62648581 | ||
| The function of CreA, the carbon catabolite repressor of Aspergillus nidulans, is regulated at the transcriptional and post-transcriptional level | Q62654960 | ||
| Osmotic stress-coupled maintenance of polar growth in Aspergillus nidulans | Q62656933 | ||
| The regulation of phosphoenolpyruvate carboxykinase and the NADP-linked malic enzyme in Aspergillus nidulans | Q62657205 | ||
| NADPH generation in Aspergillus nidulans: is the mannitol cycle involved? | Q62657285 | ||
| A newly identified gene cluster in Aspergillus nidulans comprises five novel genes localized in the alc region that are controlled both by the specific transactivator AlcR and the general carbon-catabolite repressor CreA | Q62660917 | ||
| Malic enzyme: a lipogenic enzyme in fungi | Q62661136 | ||
| Methylcitrate synthase from Aspergillus nidulans: implications for propionate as an antifungal agent | Q62663580 | ||
| P433 | issue | 11 | |
| P921 | main subject | Aspergillus nidulans | Q683881 |
| metabolic network | Q2263094 | ||
| Low-to-moderate capacity, broad specificity purine permease | Q62663895 | ||
| Putative FAD dependent glycerol 3-phosphate dehydrogenase with a predicted role in glycerol metabolism | Q62665813 | ||
| carnitine acetyltransferase, putative | Q62667381 | ||
| alpha-1,4-glucosidase | Q62668165 | ||
| Zn(II)2Cys6 transcription factor | Q62668973 | ||
| Aldehyde dehydrogenase | Q62669348 | ||
| Putative glycerone kinase with a predicted role in glycerol metabolism | Q62671117 | ||
| Fructosyl amine:oxygen oxidoreductase, putative | Q62671527 | ||
| GPR1/FUN34/YaaH family member | Q62671530 | ||
| Protein of unknown function, transcriptionally regulated by AlcR | Q62671533 | ||
| alcohol dehydrogenase | Q62671535 | ||
| Regulatory protein alcR | Q62671542 | ||
| Gluconolactonase, putative | Q62671546 | ||
| Putative alpha-1,4-glucosidase | Q62671665 | ||
| Transmembrane histidine kinase, part of a two-component signal transducer involved in the HOG signaling pathway that regulates osmotic stress response' transcript upregulated by growth in glycerol | Q62673486 | ||
| Has domain(s) with predicted transferase activity, transferring glycosyl groups activity and membrane localization | Q62674178 | ||
| Fungal Zn(2)-Cys(6) binuclear cluster domain-containing protein | Q62674182 | ||
| alpha-glucosidase, putative | Q62674188 | ||
| ATP-citrate synthase, putative | Q62676193 | ||
| ATP-citrate synthase, putative | Q62676200 | ||
| glucose-6-phosphate 1-dehydrogenase | Q62683701 | ||
| isocitrate lyase, putative | Q62693393 | ||
| Putative acetyl-CoA synthase | Q62693454 | ||
| glycerol kinase | Q62693782 | ||
| D-arabinose 1-dehydrogenase, putative | Q62693993 | ||
| putative alpha-glucosidase (maltase) | Q62641739 | ||
| acetamidase | Q62647670 | ||
| Wide-domain GATA-type transcription factor | Q62648366 | ||
| citrate synthase, mitochondrial | Q62651427 | ||
| Putative NADPH-dependent glycerol dehydrogenase with a predicted role in carbohydrate metabolism | Q62656260 | ||
| Carbon catabolite repressor A | Q62660892 | ||
| 2-methylcitrate synthase | Q62663578 | ||
| Malate synthase | Q62663595 | ||
| P304 | page(s) | R108 | |
| P577 | publication date | 2006-01-01 | |
| P1433 | published in | Genome Biology | Q5533480 |
| P1476 | title | Metabolic network driven analysis of genome-wide transcription data from Aspergillus nidulans | |
| P478 | volume | 7 |
| Q35208999 | (Post-)genomics approaches in fungal research |
| Q47350990 | A fast and simple method to estimate relative, hyphal tensile-strength of filamentous fungi used to assess the effect of autophagy. |
| Q34117042 | ATP-citrate lyase is required for production of cytosolic acetyl coenzyme A and development in Aspergillus nidulans |
| Q34259674 | An online system for metabolic network analysis |
| Q33327740 | Analysis of Aspergillus nidulans metabolism at the genome-scale |
| Q29031028 | Applications of genome-scale metabolic reconstructions |
| Q38034488 | Aspergilli: systems biology and industrial applications |
| Q57584316 | Autophagy induced by rapamycin and carbon-starvation have distinct proteome profiles in Aspergillus nidulans |
| Q28472711 | Context-specific metabolic networks are consistent with experiments |
| Q41645034 | Cytosolic NADPH balancing in Penicillium chrysogenum cultivated on mixtures of glucose and ethanol |
| Q37442434 | Gene expression profiling and the use of genome-scale in silico models of Escherichia coli for analysis: providing context for content |
| Q30441313 | Genome-scale metabolic network analysis of the opportunistic pathogen Pseudomonas aeruginosa PAO1 |
| Q33760402 | MIRA: mutual information-based reporter algorithm for metabolic networks |
| Q33825801 | Metabolic and developmental effects resulting from deletion of the citA gene encoding citrate synthase in Aspergillus nidulans |
| Q34010644 | Metabolic model integration of the bibliome, genome, metabolome and reactome of Aspergillus niger |
| Q33549712 | Metabolic network topology reveals transcriptional regulatory signatures of type 2 diabetes |
| Q54111486 | Predicted Glycerol 3-Phosphate Dehydrogenase Homologs and the Glycerol Kinase GlcA Coordinately Adapt to Various Carbon Sources and Osmotic Stress in Aspergillus fumigatus. |
| Q28492567 | Prediction of missing enzyme genes in a bacterial metabolic network. Reconstruction of the lysine-degradation pathway of Pseudomonas aeruginosa |
| Q35756850 | RNAseq analysis of Aspergillus fumigatus in blood reveals a just wait and see resting stage behavior |
| Q46048030 | Reprogramming of carbon metabolism by the transcriptional activators AcuK and AcuM in Aspergillus nidulans. |
| Q41833686 | Studies of the production of fungal polyketides in Aspergillus nidulans by using systems biology tools |
| Q33389182 | Systems analysis unfolds the relationship between the phosphoketolase pathway and growth in Aspergillus nidulans |
| Q21145307 | The RAVEN toolbox and its use for generating a genome-scale metabolic model for Penicillium chrysogenum |
| Q34769706 | The Spt-Ada-Gcn5 Acetyltransferase (SAGA) complex in Aspergillus nidulans |
| Q34664803 | Trancriptional landscape of Aspergillus niger at breaking of conidial dormancy revealed by RNA-sequencing |
| Q41907298 | Transcriptional control of gluconeogenesis in Aspergillus nidulans |
| Q33599300 | Transcriptional regulation of gene expression clusters in motor neurons following spinal cord injury |
| Q33507108 | Uncovering transcriptional regulation of glycerol metabolism in Aspergilli through genome-wide gene expression data analysis |
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