| scholarly article | Q13442814 |
| P8978 | DBLP publication ID | journals/bioinformatics/CicekRO14 |
| P356 | DOI | 10.1093/BIOINFORMATICS/BTU290 |
| P932 | PMC publication ID | 4058943 |
| P698 | PubMed publication ID | 24931981 |
| P5875 | ResearchGate publication ID | 263130509 |
| P50 | author | Kathryn Roeder | Q42305962 |
| P2093 | author name string | Gultekin Ozsoyoglu | |
| A Ercument Cicek | |||
| P2860 | cites work | Large-scale mapping and validation of Escherichia coli transcriptional regulation from a compendium of expression profiles | Q21145898 |
| Decreased tryptophan metabolism in patients with autism spectrum disorders | Q21198692 | ||
| Identifying functional modules using expression profiles and confidence-scored protein interactions | Q48291481 | ||
| GC-MS-based urine metabolic profiling of autism spectrum disorders. | Q50301433 | ||
| The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases. | Q51141864 | ||
| Observation conflict resolution in steady-state metabolic network dynamics analysis. | Q51342628 | ||
| Integrated analysis of metabolite and transcript levels reveals the metabolic shifts that underlie tomato fruit development and highlight regulatory aspects of metabolic network behavior. | Q52003287 | ||
| Dimethyl sulfoxide reductase is not required for trimethylamine N-oxide reduction in Escherichia coli | Q55044310 | ||
| Transcriptional Metabolic Inflexibility in Skeletal Muscle Among Individuals With Increasing Insulin Resistance | Q55162907 | ||
| Network-based prediction of human tissue-specific metabolism | Q81798711 | ||
| Scale-free networks in cell biology | Q22306161 | ||
| Fatty acid metabolism in neurodevelopmental disorder: a new perspective on associations between attention-deficit/hyperactivity disorder, dyslexia, dyspraxia and the autistic spectrum | Q22337212 | ||
| Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles | Q24536351 | ||
| Functional impact of global rare copy number variation in autism spectrum disorders | Q24596191 | ||
| Revealing modularity and organization in the yeast molecular network by integrated analysis of highly heterogeneous genomewide data | Q24625913 | ||
| Global reconstruction of the human metabolic network based on genomic and bibliomic data | Q24677060 | ||
| The human disease network | Q24678240 | ||
| Estimating mutual information using B-spline functions--an improved similarity measure for analysing gene expression data | Q24791286 | ||
| Functional discovery via a compendium of expression profiles | Q27938962 | ||
| The Pathway Tools software | Q28217270 | ||
| Metalloenzymes of the denitrification pathway | Q28270805 | ||
| Reconstruction of genome-scale active metabolic networks for 69 human cell types and 16 cancer types using INIT | Q28483779 | ||
| Network integration and graph analysis in mammalian molecular systems biology | Q28751567 | ||
| Transcriptomic analysis of autistic brain reveals convergent molecular pathology | Q29614877 | ||
| Discovering regulatory and signalling circuits in molecular interaction networks | Q29614951 | ||
| A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information | Q29615371 | ||
| Integrated genomic and proteomic analyses of a systematically perturbed metabolic network | Q29616021 | ||
| Network-based classification of breast cancer metastasis | Q29616384 | ||
| Activities at the Universal Protein Resource (UniProt) | Q29617787 | ||
| The current excitement in bioinformatics-analysis of whole-genome expression data: how does it relate to protein structure and function? | Q30327381 | ||
| Characterization of the deleted in autism 1 protein family: implications for studying cognitive disorders | Q30399182 | ||
| Using whole-exome sequencing to identify inherited causes of autism | Q30418126 | ||
| Improving gene set analysis of microarray data by SAM-GS. | Q30479806 | ||
| Global transcriptional response of Saccharomyces cerevisiae to the deletion of SDH3. | Q30490479 | ||
| Metabolic network driven analysis of genome-wide transcription data from Aspergillus nidulans | Q30500823 | ||
| Unique acyl-carnitine profiles are potential biomarkers for acquired mitochondrial disease in autism spectrum disorder | Q30534798 | ||
| Exploring gene expression data with class scores. | Q30684280 | ||
| Integrating high-throughput and computational data elucidates bacterial networks | Q30928624 | ||
| Integration of metabolome data with metabolic networks reveals reporter reactions | Q31064013 | ||
| Gene expression and metabolite profiling of Populus euphratica growing in the Negev desert | Q33229553 | ||
| Architecture of transcriptional regulatory circuits is knitted over the topology of bio-molecular interaction networks | Q33318960 | ||
| Genetic networks of liver metabolism revealed by integration of metabolic and transcriptional profiling | Q33325905 | ||
| Analysis of Aspergillus nidulans metabolism at the genome-scale | Q33327740 | ||
| Gene-network analysis identifies susceptibility genes related to glycobiology in autism | Q33459263 | ||
| MIClique: An algorithm to identify differentially coexpressed disease gene subset from microarray data. | Q33532577 | ||
| Interpreting metabolomic profiles using unbiased pathway models | Q33535872 | ||
| Metabolic network topology reveals transcriptional regulatory signatures of type 2 diabetes | Q33549712 | ||
| Analyzing the regulation of metabolic pathways in human breast cancer | Q33689986 | ||
| DIA1R is an X-linked gene related to Deleted In Autism-1. | Q33802577 | ||
| Uncovering transcriptional regulation of metabolism by using metabolic network topology | Q33863545 | ||
| Mutual information relevance networks: functional genomic clustering using pairwise entropy measurements | Q33910269 | ||
| A new metabolomics analysis technique: steady-state metabolic network dynamics analysis | Q34007937 | ||
| Alternative respiratory pathways of Escherichia coli: energetics and transcriptional regulation in response to electron acceptors | Q34064912 | ||
| Transcriptional regulation in constraints-based metabolic models of Escherichia coli | Q34128076 | ||
| Identifying neighborhoods of coordinated gene expression and metabolite profiles | Q34166321 | ||
| A common X-linked inborn error of carnitine biosynthesis may be a risk factor for nondysmorphic autism | Q34273431 | ||
| EcoCyc: fusing model organism databases with systems biology | Q34311072 | ||
| ADEMA: an algorithm to determine expected metabolite level alterations using mutual information | Q34557978 | ||
| The mutual information: detecting and evaluating dependencies between variables. | Q34973910 | ||
| Plasma fatty acids as diagnostic markers in autistic patients from Saudi Arabia | Q35023635 | ||
| Subnetwork state functions define dysregulated subnetworks in cancer | Q35070492 | ||
| A systems biology approach for pathway level analysis | Q36004656 | ||
| Integrative analysis of the cancer transcriptome | Q36141641 | ||
| Autism and phthalate metabolite glucuronidation | Q37230781 | ||
| Reconstruction of the yeast Snf1 kinase regulatory network reveals its role as a global energy regulator | Q37481996 | ||
| The neurobiology of lipid metabolism in autism spectrum disorders | Q37846445 | ||
| Estimation of mutual information using kernel density estimators. | Q38531494 | ||
| Inhibition of nitrate reduction in some rumen bacteria by tungstate | Q40322149 | ||
| Expression dynamics of a cellular metabolic network | Q40510422 | ||
| Metabolic and transcriptional response to cofactor perturbations in Escherichia coli. | Q40813422 | ||
| A joint model of regulatory and metabolic networks | Q41815059 | ||
| Principles of transcriptional regulation and evolution of the metabolic system in E. coli | Q42021181 | ||
| Molecular cloning and DNA sequence of dniR, a gene affecting anaerobic expression of the Escherichia coli hexaheme nitrite reductase | Q42614276 | ||
| Urinary metabolic phenotyping differentiates children with autism from their unaffected siblings and age-matched controls | Q43119044 | ||
| Genome-wide analysis of maltose utilization and regulation in aspergilli | Q43288633 | ||
| Constraints-based models: regulation of gene expression reduces the steady-state solution space | Q45211444 | ||
| Computational identification of altered metabolism using gene expression and metabolic pathways. | Q46045072 | ||
| Principles of transcriptional control in the metabolic network of Saccharomyces cerevisiae | Q47359603 | ||
| P275 | copyright license | Creative Commons Attribution-NonCommercial 3.0 Unported | Q18810331 |
| P6216 | copyright status | copyrighted | Q50423863 |
| P433 | issue | 12 | |
| P407 | language of work or name | English | Q1860 |
| P921 | main subject | metabolic network | Q2263094 |
| P304 | page(s) | i175-84 | |
| P577 | publication date | 2014-06-01 | |
| P1433 | published in | Bioinformatics | Q4914910 |
| P1476 | title | MIRA: mutual information-based reporter algorithm for metabolic networks | |
| P478 | volume | 30 |
| Q31141587 | A Conversation on Data Mining Strategies in LC-MS Untargeted Metabolomics: Pre-Processing and Pre-Treatment Steps |
| Q30998192 | Reporter pathway analysis from transcriptome data: Metabolite-centric versus Reaction-centric approach |
| Q38606497 | Updates in metabolomics tools and resources: 2014-2015. |
Search more.