| scholarly article | Q13442814 |
| P356 | DOI | 10.1074/JBC.M201691200 |
| P698 | PubMed publication ID | 12006566 |
| P50 | author | Bernhard Palsson | Q4894212 |
| P2093 | author name string | Markus W Covert | |
| P2860 | cites work | A functional update of the Escherichia coli K-12 genome | Q22299117 |
| The Escherichia coli MG1655 in silico metabolic genotype: its definition, characteristics, and capabilities | Q24655269 | ||
| Energetic efficiency of Escherichia coli: effects of mutations in components of the aerobic respiratory chain | Q24671440 | ||
| Ribose catabolism of Escherichia coli: characterization of the rpiB gene encoding ribose phosphate isomerase B and of the rpiR gene, which is involved in regulation of rpiB expression | Q24684647 | ||
| The complete genome sequence of Escherichia coli K-12 | Q27860542 | ||
| In silico predictions of Escherichia coli metabolic capabilities are consistent with experimental data | Q29618471 | ||
| RegulonDB (version 3.2): transcriptional regulation and operon organization in Escherichia coli K-12 | Q30977010 | ||
| Modeling transcriptional control in gene networks--methods, recent results, and future directions | Q33925975 | ||
| Regulation of Gene Expression in Flux Balance Models of Metabolism | Q34101809 | ||
| Metabolic modeling of microbial strains in silico. | Q34179356 | ||
| Cloning, characterization, and functional expression of acs, the gene which encodes acetyl coenzyme A synthetase in Escherichia coli | Q35586072 | ||
| Mutants of Escherichia coli deficient in the fermentative lactate dehydrogenase | Q39947652 | ||
| Biochemical Genetics of the -Keto Acid Dehydrogenase Complexes of Escherichia coli K12: Isolation and Biochemical Properties of Deletion Mutants | Q40782335 | ||
| Succinate Dehydrogenase-dependent Nutritional Requirement for Succinate in Mutants of Escherichia coli K12 | Q40980981 | ||
| Gene expression profiling by DNA microarrays and metabolic fluxes in Escherichia coli | Q41728848 | ||
| The organization of metabolic reaction networks. III. Application for diauxic growth on glucose and lactose | Q43776901 | ||
| The challenges of in silico biology | Q46255466 | ||
| Simulation of prokaryotic genetic circuits | Q46714216 | ||
| From specific gene regulation to genomic networks: a global analysis of transcriptional regulation in Escherichia coli | Q47817916 | ||
| Mathematical model of the lac operon: inducer exclusion, catabolite repression, and diauxic growth on glucose and lactose | Q52272848 | ||
| Boolean formalization of genetic control circuits | Q52928639 | ||
| Construction and properties of aconitase mutants of Escherichia coli. | Q54564964 | ||
| The use of suicide substrates to select mutants of Escherichia coli lacking enzymes of alcohol fermentation. | Q54772028 | ||
| The Comprehensive Microbial Resource. | Q55113853 | ||
| P433 | issue | 31 | |
| P407 | language of work or name | English | Q1860 |
| P921 | main subject | Escherichia coli | Q25419 |
| P304 | page(s) | 28058-28064 | |
| P577 | publication date | 2002-05-10 | |
| P1433 | published in | Journal of Biological Chemistry | Q867727 |
| P1476 | title | Transcriptional regulation in constraints-based metabolic models of Escherichia coli | |
| P478 | volume | 277 |
| Q34050854 | A computational exploration of bacterial metabolic diversity identifying metabolic interactions and growth-efficient strain communities |
| Q29615371 | A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information |
| Q46786460 | A quantitative approach to catabolite repression in Escherichia coli |
| Q38861387 | A systematic reconstruction and constraint-based analysis of Leishmania donovani metabolic network: identification of potential antileishmanial drug targets. |
| Q36790849 | Advanced Stoichiometric Analysis of Metabolic Networks of Mammalian Systems |
| Q41211496 | Advances and challenges in logical modeling of cell cycle regulation: perspective for multi-scale, integrative yeast cell models. |
| Q37808675 | Advances in analysis of transcriptional regulatory networks |
| Q57809307 | Advances in metabolic flux analysis toward genome-scale profiling of higher organisms |
| Q58706719 | An ensemble of mathematical models showing diauxic growth behaviour |
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| Q35569448 | Asymmetry of (13)C labeled 3-pyruvate affords improved site specific labeling of RNA for NMR spectroscopy. |
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| Q28506971 | Bioinformatics and cellular signaling |
| Q35751869 | Biomass production of site selective 13C/15N nucleotides using wild type and a transketolase E. coli mutant for labeling RNA for high resolution NMR |
| Q37776216 | Building the blueprint of life |
| Q36668874 | Building the repertoire of dispensable chromosome regions in Bacillus subtilis entails major refinement of cognate large-scale metabolic model. |
| Q34911268 | COBRApy: COnstraints-Based Reconstruction and Analysis for Python |
| Q28545184 | CONSTRICTOR: constraint modification provides insight into design of biochemical networks |
| Q35810400 | Calibration and analysis of genome-based models for microbial ecology |
| Q42958059 | Capturing the response of Clostridium acetobutylicum to chemical stressors using a regulated genome-scale metabolic model |
| Q34436925 | Characterizing criticality of proteins by systems dynamics: Escherichia coli central carbon metabolism as a working example |
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