| scholarly article | Q13442814 |
| P2093 | author name string | Mark P Styczynski | |
| Robert A Dromms | |||
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| Metabolic dynamics in the human red cell. Part I--A comprehensive kinetic model. | Q52510891 | ||
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| When transcriptome meets metabolome: fast cellular responses of yeast to sudden relief of glucose limitation. | Q39346136 | ||
| Evolutionary engineering of Saccharomyces cerevisiae for anaerobic growth on xylose | Q39751889 | ||
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| Novel evolutionary engineering approach for accelerated utilization of glucose, xylose, and arabinose mixtures by engineered Saccharomyces cerevisiae strains. | Q40019156 | ||
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| In-depth profiling of lysine-producing Corynebacterium glutamicum by combined analysis of the transcriptome, metabolome, and fluxome | Q40634157 | ||
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| Development of quantitative metabolomics for Pichia pastoris. | Q41883859 | ||
| Metabolic flux elucidation for large-scale models using 13C labeled isotopes | Q41918100 | ||
| Short-term metabolome dynamics and carbon, electron, and ATP balances in chemostat-grown Saccharomyces cerevisiae CEN.PK 113-7D following a glucose pulse | Q41956228 | ||
| Driving forces enable high-titer anaerobic 1-butanol synthesis in Escherichia coli | Q42120436 | ||
| Revealing the beneficial effect of protease supplementation to high gravity beer fermentations using "-omics" techniques | Q42131870 | ||
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| Evolutionary engineering strategies to enhance tolerance of xylose utilizing recombinant yeast to inhibitors derived from spruce biomass | Q42255481 | ||
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| Quantitative metabolomics analysis of amino acid metabolism in recombinant Pichia pastoris under different oxygen availability conditions | Q42548094 | ||
| Metabolic pathway engineering based on metabolomics confers acetic and formic acid tolerance to a recombinant xylose-fermenting strain of Saccharomyces cerevisiae | Q42578586 | ||
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| Integrating metabolic, transcriptional regulatory and signal transduction models in Escherichia coli. | Q43575020 | ||
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| Metabolic engineering of the non-sporulating, non-solventogenic Clostridium acetobutylicum strain M5 to produce butanol without acetone demonstrate the robustness of the acid-formation pathways and the importance of the electron balance | Q44763934 | ||
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| Quantitative analysis of the microbial metabolome by isotope dilution mass spectrometry using uniformly 13C-labeled cell extracts as internal standards | Q45203084 | ||
| Application of dynamic flux balance analysis to an industrial Escherichia coli fermentation. | Q45914579 | ||
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| High-throughput classification of yeast mutants for functional genomics using metabolic footprinting. | Q45967017 | ||
| Metabolic impact of redox cofactor perturbations in Saccharomyces cerevisiae. | Q46009817 | ||
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| Identification of optimal measurement sets for complete flux elucidation in metabolic flux analysis experiments | Q46540660 | ||
| Physiological characterization of xylose metabolism in Aspergillus niger under oxygen-limited conditions | Q46619438 | ||
| Determination of the cytosolic free NAD/NADH ratio in Saccharomyces cerevisiae under steady-state and highly dynamic conditions | Q46668901 | ||
| Comprehensive analysis of the metabolome of Pseudomonas putida S12 grown on different carbon sources. | Q46691431 | ||
| Mathematics of organizationally complex systems. | Q52679933 | ||
| Inverse metabolic engineering: A strategy for directed genetic engineering of useful phenotypes. | Q52907142 | ||
| Biochemical systems analysis. I. Some mathematical properties of the rate law for the component enzymatic reactions. | Q53012243 | ||
| Integrated multilaboratory systems biology reveals differences in protein metabolism between two reference yeast strains | Q53406810 | ||
| Dynamic modeling of lactic acid fermentation metabolism with Lactococcus lactis. | Q53435908 | ||
| 13C-Labeled metabolic flux analysis of a fed-batch culture of elutriated Saccharomyces cerevisiae. | Q53566413 | ||
| Identification of factors regulating Escherichia coli 2,3-butanediol production by continuous culture and metabolic flux analysis. | Q54337128 | ||
| Escherichia coli responds with a rapid and large change in growth rate upon a shift from glucose-limited to glucose-excess conditions. | Q54364642 | ||
| Synergy between (13)C-metabolic flux analysis and flux balance analysis for understanding metabolic adaptation to anaerobiosis in E. coli. | Q54374625 | ||
| Orthogonal projections to latent structures (O-PLS) | Q56435041 | ||
| Procedures for large-scale metabolic profiling of serum and plasma using gas chromatography and liquid chromatography coupled to mass spectrometry | Q56974325 | ||
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| A comparison of direct infusion MS and GC-MS for metabolic footprinting of yeast mutants | Q57020628 | ||
| How many principal components? stopping rules for determining the number of non-trivial axes revisited | Q58726488 | ||
| Robust industrial Saccharomyces cerevisiae strains for very high gravity bio-ethanol fermentations | Q59286481 | ||
| Combining desorption electrospray ionization mass spectrometry and nuclear magnetic resonance for differential metabolomics without sample preparation | Q59641506 | ||
| Identification of flux control in metabolic networks using non-equilibrium thermodynamics | Q59832555 | ||
| Dynamic in vivo metabolome response of Saccharomyces cerevisiae to a stepwise perturbation of the ATP requirement for benzoate export | Q80574694 | ||
| Tandem mass spectrometry: a novel approach for metabolic flux analysis | Q82755011 | ||
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| Cross-platform comparison of methods for quantitative metabolomics of primary metabolism | Q83390070 | ||
| GABA metabolism pathway genes, UGA1 and GAD1, regulate replicative lifespan in Saccharomyces cerevisiae | Q83523028 | ||
| Identification of informative metabolic responses using a minibioreactor: a small step change in the glucose supply rate creates a large metabolic response in Saccharomyces cerevisiae | Q83622116 | ||
| Measuring complete isotopomer distribution of aspartate using gas chromatography/tandem mass spectrometry | Q83911512 | ||
| Metabolic profiling reveals new serum biomarkers for differentiating diabetic nephropathy | Q87423238 | ||
| Metabolic network reconstruction and genome-scale model of butanol-producing strain Clostridium beijerinckii NCIMB 8052. | Q33994087 | ||
| Degeneration of penicillin production in ethanol-limited chemostat cultivations of Penicillium chrysogenum: A systems biology approach | Q33997766 | ||
| Metabolic fluxes and metabolic engineering | Q33998032 | ||
| Metabolic model integration of the bibliome, genome, metabolome and reactome of Aspergillus niger | Q34010644 | ||
| Regulation of gene expression in flux balance models of metabolism | Q34101809 | ||
| MetRxn: a knowledgebase of metabolites and reactions spanning metabolic models and databases | Q34122951 | ||
| Transcriptional regulation in constraints-based metabolic models of Escherichia coli | Q34128076 | ||
| Integrating flux balance analysis into kinetic models to decipher the dynamic metabolism of Shewanella oneidensis MR-1. | Q34154452 | ||
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| XCMS Online: a web-based platform to process untargeted metabolomic data | Q34245491 | ||
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| Prediction of microbial growth rate versus biomass yield by a metabolic network with kinetic parameters | Q34335467 | ||
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| Unravelling evolutionary strategies of yeast for improving galactose utilization through integrated systems level analysis | Q35122972 | ||
| Bioinformatics tools for cancer metabolomics | Q35163111 | ||
| Directed evolution of AraC for improved compatibility of arabinose- and lactose-inducible promoters | Q36136820 | ||
| Approximative kinetic formats used in metabolic network modeling | Q36186685 | ||
| Manipulation of the carbon storage regulator system for metabolite remodeling and biofuel production in Escherichia coli | Q36287119 | ||
| Application of functional genomics to pathway optimization for increased isoprenoid production. | Q36672684 | ||
| Group contribution method for thermodynamic analysis of complex metabolic networks | Q36783787 | ||
| Ensemble modeling of metabolic networks | Q37008279 | ||
| Expanding metabolism for biosynthesis of nonnatural alcohols | Q37081637 | ||
| Linking high-resolution metabolic flux phenotypes and transcriptional regulation in yeast modulated by the global regulator Gcn4p | Q37167828 | ||
| Modelling metabolic networks using power-laws and S-systems | Q37269417 | ||
| Metabolomics-driven quantitative analysis of ammonia assimilation in E. coli | Q37330224 | ||
| Flux balance analysis in the era of metabolomics | Q29026261 | ||
| The MetaCyc Database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases | Q29615370 | ||
| A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information | Q29615371 | ||
| Reconstruction of biochemical networks in microorganisms | Q29616018 | ||
| Optknock: a bilevel programming framework for identifying gene knockout strategies for microbial strain optimization | Q29616020 | ||
| XCMS: processing mass spectrometry data for metabolite profiling using nonlinear peak alignment, matching, and identification | Q29616057 | ||
| Dynamic analysis of integrated signaling, metabolic, and regulatory networks | Q30441717 | ||
| The application of flux balance analysis in systems biology | Q30451787 | ||
| Limitations in Xylose-FermentingSaccharomyces cerevisiae, Made Evident through Comprehensive Metabolite Profiling and Thermodynamic Analysis | Q30475607 | ||
| Systematic evaluation of objective functions for predicting intracellular fluxes in Escherichia coli | Q30479887 | ||
| Data pre-processing in liquid chromatography-mass spectrometry-based proteomics | Q31003899 | ||
| Centering, scaling, and transformations: improving the biological information content of metabolomics data | Q31043704 | ||
| Metabolic flux analysis of a glycerol-overproducing Saccharomyces cerevisiae strain based on GC-MS, LC-MS and NMR-derived C-labelling data | Q31080911 | ||
| A method for estimation of elasticities in metabolic networks using steady state and dynamic metabolomics data and linlog kinetics | Q31087514 | ||
| Systematic identification of conserved metabolites in GC/MS data for metabolomics and biomarker discovery | Q31096527 | ||
| Visualization of GC/TOF-MS-based metabolomics data for identification of biochemically interesting compounds using OPLS class models | Q31137205 | ||
| anNET: a tool for network-embedded thermodynamic analysis of quantitative metabolome data | Q31152793 | ||
| High-throughput screen for poly-3-hydroxybutyrate in Escherichia coli and Synechocystis sp. strain PCC6803. | Q33242149 | ||
| Effect of carbon source perturbations on transcriptional regulation of metabolic fluxes in Saccharomyces cerevisiae | Q33281135 | ||
| Including metabolite concentrations into flux balance analysis: thermodynamic realizability as a constraint on flux distributions in metabolic networks | Q33286434 | ||
| Melanin-based high-throughput screen for L-tyrosine production in Escherichia coli | Q33312174 | ||
| The Systems Biology Research Tool: evolvable open-source software | Q33347636 | ||
| The genome-scale metabolic model iIN800 of Saccharomyces cerevisiae and its validation: a scaffold to query lipid metabolism | Q33358522 | ||
| Systems analysis unfolds the relationship between the phosphoketolase pathway and growth in Aspergillus nidulans | Q33389182 | ||
| Decomposing complex reaction networks using random sampling, principal component analysis and basis rotation | Q33415709 | ||
| GrowMatch: an automated method for reconciling in silico/in vivo growth predictions | Q33417622 | ||
| ChromA: signal-based retention time alignment for chromatography-mass spectrometry data | Q33464043 | ||
| Metabolic fluxes during strong carbon catabolite repression by malate in Bacillus subtilis | Q33581819 | ||
| Combining metabolic and protein engineering of a terpenoid biosynthetic pathway for overproduction and selectivity control | Q33636362 | ||
| An automated phenotype-driven approach (GeneForce) for refining metabolic and regulatory models | Q33742075 | ||
| Improving the iMM904 S. cerevisiae metabolic model using essentiality and synthetic lethality data | Q33781701 | ||
| Thermodynamic analysis of biodegradation pathways | Q33816115 | ||
| An in vivo data-driven framework for classification and quantification of enzyme kinetics and determination of apparent thermodynamic data | Q33830486 | ||
| Metab: an R package for high-throughput analysis of metabolomics data generated by GC-MS. | Q33940342 | ||
| Fluxomers: a new approach for 13C metabolic flux analysis | Q33994080 | ||
| P275 | copyright license | Creative Commons Attribution 4.0 International | Q20007257 |
| P6216 | copyright status | copyrighted | Q50423863 |
| P433 | issue | 4 | |
| P921 | main subject | metabolomics | Q12149006 |
| P304 | page(s) | 1090-1122 | |
| P577 | publication date | 2012-12-14 | |
| P1433 | published in | Metabolites | Q27724046 |
| P1476 | title | Systematic applications of metabolomics in metabolic engineering | |
| P478 | volume | 2 |
| Q90337547 | K-FIT: An accelerated kinetic parameterization algorithm using steady-state fluxomic data |
| Q27702925 | MINEs: open access databases of computationally predicted enzyme promiscuity products for untargeted metabolomics |
| Q55364376 | Metabolomics Analysis of the Toxic Effects of the Production of Lycopene and Its Precursors. |
| Q26777835 | Metabolomics, Standards, and Metabolic Modeling for Synthetic Biology in Plants |
| Q92105736 | NS-kNN: a modified k-nearest neighbors approach for imputing metabolomics data |
| Q42772635 | PHO13 deletion-induced transcriptional activation prevents sedoheptulose accumulation during xylose metabolism in engineered Saccharomyces cerevisiae |
| Q50951354 | Time-Dependent Lactate Production and Amino Acid Utilization in Cultured Astrocytes Under High Glucose Exposure. |
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