Agent-based modeling of competence phenotype switching in Bacillus subtilis

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Agent-based modeling of competence phenotype switching in Bacillus subtilis is …
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scholarly articleQ13442814

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P6179Dimensions Publication ID1045178838
P356DOI10.1186/1742-4682-10-23
P932PMC publication ID3648451
P698PubMed publication ID23551850
P5875ResearchGate publication ID236102859

P2093author name stringSuzy M Stiegelmeyer
Morgan C Giddings
P2860cites workWhy and how bacteria localize proteinsQ37645597
Characterization of comQ and comX, two genes required for production of ComX pheromone in Bacillus subtilisQ39694728
Basal expression rate of comK sets a 'switching-window' into the K-state of Bacillus subtilisQ42509760
Pseudomonas biofilm formation and antibiotic resistance are linked to phenotypic variationQ42674600
A small gene, designated comS, located within the coding region of the fourth amino acid-activation domain of srfA, is required for competence development in Bacillus subtilisQ42684371
Bistability in the Bacillus subtilis K-state (competence) system requires a positive feedback loopQ42882124
Persister cells and tolerance to antimicrobialsQ44735515
Microcolony and biofilm formation as a survival strategy for bacteriaQ46303744
A computational model of antibiotic-resistance mechanisms in methicillin-resistant Staphylococcus aureus (MRSA).Q46520780
Individual-based modelling of biofilms.Q52051890
Rok (YkuW) regulates genetic competence in Bacillus subtilis by directly repressing comKQ59398620
Bacillus subtilis DegU acts as a positive regulator for comK expressionQ71860423
comK encodes the competence transcription factor, the key regulatory protein for competence development in Bacillus subtilisQ72318915
The Bacillus subtilis transition state regulator AbrB binds to the -35 promoter region of comKQ72998152
Universally sloppy parameter sensitivities in systems biology modelsQ21145658
Competence in Bacillus subtilis is controlled by regulated proteolysis of a transcription factorQ24533414
Identification of comS, a gene of the srfA operon that regulates the establishment of genetic competence in Bacillus subtilisQ24563609
Transition to quorum sensing in an Agrobacterium population: A stochastic modelQ24814326
The evolution of quorum sensing in bacterial biofilmsQ27333799
An agent-based model of signal transduction in bacterial chemotaxisQ27333948
An excitable gene regulatory circuit induces transient cellular differentiationQ28303335
Bacillus subtilis CodY represses early-stationary-phase genes by sensing GTP levelsQ28364118
Stochasticity in gene expression: from theories to phenotypesQ29617360
Bet-hedging and epigenetic inheritance in bacterial cell developmentQ30482011
Noise in gene expression determines cell fate in Bacillus subtilisQ30557299
Cell division in Escherichia coli cultures monitored at single cell resolutionQ33330202
Molecular switches--the ON and OFF of bacterial phase variation.Q33727880
Phenotypic variation in bacteria: the role of feedback regulationQ34502643
Bistability in bacteriaQ34552788
Tunability and noise dependence in differentiation dynamicsQ34611514
Controlling competence in Bacillus subtilis: shared use of regulatorsQ35063306
The competence transcription factor of Bacillus subtilis recognizes short A/T-rich sequences arranged in a unique, flexible pattern along the DNA helixQ35200591
The pleiotropic response regulator DegU functions as a priming protein in competence development in Bacillus subtilisQ35202131
Cooperation and conflict in microbial biofilms.Q35612336
A peptide signal for adapter protein-mediated degradation by the AAA+ protease ClpCPQ36091886
Molecular level stochastic model for competence cycles in Bacillus subtilisQ36140843
Growth kinetics of individual Bacillus subtilis cells and correlation with nucleoid extensionQ36248495
Non-inherited antibiotic resistance.Q36508695
Modeling antibiotic resistance in hospitals: the impact of minimizing treatment durationQ36728704
Stochastic processes influence stationary-phase decisions in Bacillus subtilisQ37096548
Bistability, epigenetics, and bet-hedging in bacteriaQ37184651
Antirepression as a second mechanism of transcriptional activation by a minor groove binding proteinQ37318351
Bacteriophage and phenotypic variation in Pseudomonas aeruginosa biofilm development.Q37623383
P275copyright licenseCreative Commons Attribution 2.0 GenericQ19125117
P6216copyright statuscopyrightedQ50423863
P921main subjectBacillus subtilisQ131238
agent-based modelQ392811
P304page(s)23
P577publication date2013-04-03
P1433published inTheoretical Biology and Medical ModellingQ15750144
P1476titleAgent-based modeling of competence phenotype switching in Bacillus subtilis
P478volume10

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Q30635755Agent-based spatiotemporal simulation of biomolecular systems within the open source MASON framework.cites workP2860

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