| P50 | author | Eugene Koonin | Q3699974 |
| | Luciano Milanesi | Q42234044 |
| P2093 | author name string | Igor B Rogozin | |
| | Diana Chernikova | |
| | Eugenia Poliakov | |
| | David Managadze | |
| | Sivakumar Kannan | |
| P2860 | cites work | Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences | Q21092859 |
| | The vast, conserved mammalian lincRNome | Q21145306 |
| | A dual origin of the Xist gene from a protein-coding gene and a set of transposable elements | Q21558507 |
| | Differentiating protein-coding and noncoding RNA: challenges and ambiguities | Q21563495 |
| | Non-coding RNA | Q22066043 |
| | On the immortality of television sets: "function" in the human genome according to the evolution-free gospel of ENCODE | Q22066047 |
| | Proto-genes and de novo gene birth | Q22122160 |
| | Intergenic transcription is required to repress the Saccharomyces cerevisiae SER3 gene | Q22122492 |
| | Initial sequencing and comparative analysis of the mouse genome | Q22122521 |
| | Selfish DNA: a sexually-transmitted nuclear parasite | Q24532152 |
| | The Evf-2 noncoding RNA is transcribed from the Dlx-5/6 ultraconserved region and functions as a Dlx-2 transcriptional coactivator | Q24548002 |
| | The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression | Q24608592 |
| | Specific expression of long noncoding RNAs in the mouse brain | Q24648944 |
| | A natural antisense transcript regulates Zeb2/Sip1 gene expression during Snail1-induced epithelial-mesenchymal transition | Q24649050 |
| | Transcriptional interferences in cis natural antisense transcripts of humans and mice | Q24671265 |
| | Prevalence of the initiator over the TATA box in human and yeast genes and identification of DNA motifs enriched in human TATA-less core promoters | Q24674136 |
| | Characterization of the structure, function, and mechanism of B2 RNA, an ncRNA repressor of RNA polymerase II transcription | Q24676295 |
| | Dendritic BC1 RNA in translational control mechanisms | Q24678623 |
| | Functionality or transcriptional noise? Evidence for selection within long noncoding RNAs | Q24681496 |
| | Genome regulation by long noncoding RNAs. | Q27691812 |
| | The transcriptional landscape of the mammalian genome | Q27861110 |
| | Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs | Q28131821 |
| | Reverse transcription in the eukaryotic genome: retroviruses, pararetroviruses, retrotransposons, and retrotranscripts | Q28280929 |
| | The Air noncoding RNA epigenetically silences transcription by targeting G9a to chromatin | Q28506981 |
| | Rapid turnover of long noncoding RNAs and the evolution of gene expression | Q28728747 |
| | Transposable elements and the evolution of regulatory networks | Q28756349 |
| | Evolution and functions of long noncoding RNAs | Q29614331 |
| | Kcnq1ot1 antisense noncoding RNA mediates lineage-specific transcriptional silencing through chromatin-level regulation | Q29614333 |
| | RNA maps reveal new RNA classes and a possible function for pervasive transcription | Q29614334 |
| | Global identification of human transcribed sequences with genome tiling arrays | Q29614335 |
| | The UCSC Table Browser data retrieval tool | Q29614432 |
| | The regulated retrotransposon transcriptome of mammalian cells | Q29614444 |
| | Origin of a substantial fraction of human regulatory sequences from transposable elements | Q29617225 |
| | Modular regulatory principles of large non-coding RNAs | Q29617829 |
| | The product of the mouse Xist gene is a 15 kb inactive X-specific transcript containing no conserved ORF and located in the nucleus | Q29617834 |
| | Inferring phylogenies from protein sequences by parsimony, distance, and likelihood methods | Q29618948 |
| | Genomic scrap yard: how genomes utilize all that junk | Q30650874 |
| | Prediction and phylogenetic analysis of mammalian short interspersed elements (SINEs). | Q30996159 |
| | Gene loss, protein sequence divergence, gene dispensability, expression level, and interactivity are correlated in eukaryotic evolution | Q31006545 |
| | Ribosome profiling reveals resemblance between long non-coding RNAs and 5' leaders of coding RNAs | Q36918106 |
| | Conserved eukaryotic transposable elements and the evolution of gene regulation | Q37009857 |
| | Mistranslation-induced protein misfolding as a dominant constraint on coding-sequence evolution. | Q37227320 |
| | Establishing legitimacy and function in the new transcriptome | Q37615737 |
| | Transposable elements in gene regulation and in the evolution of vertebrate genomes | Q37632988 |
| | Long noncoding RNAs in development and disease of the central nervous system | Q38096710 |
| | Non-coding RNAs in homeostasis, disease and stress responses: an evolutionary perspective | Q38109600 |
| | Genomes were forged by massive bombardments with retroelements and retrosequences | Q40751648 |
| | The origin of interspersed repeats in the human genome | Q41312150 |
| | Evolution of the mammalian transcription factor binding repertoire via transposable elements | Q41955907 |
| | The long non-coding RNA Fendrr links epigenetic control mechanisms to gene regulatory networks in mammalian embryogenesis. | Q42122873 |
| | The ORF1 protein encoded by LINE-1: structure and function during L1 retrotransposition | Q42373463 |
| | A novel class of SINE elements derived from 5S rRNA. | Q46340823 |
| | Empty and occupied insertion site of the truncated LINE-1 repeat located in the mouse serum albumin-encoding gene | Q48269818 |
| | Molecular domestication--more than a sporadic episode in evolution. | Q52581934 |
| | PERSPECTIVE: TRANSPOSABLE ELEMENTS, PARASITIC DNA, AND GENOME EVOLUTION | Q56267651 |
| | Exaptation—a Missing Term in the Science of Form | Q56611312 |
| | Selfish DNA | Q59071461 |
| | Human antisense genes have unusually short introns: evidence for selection for rapid transcription | Q59303885 |
| | Determinants of substitution rates in mammalian genes: expression pattern affects selection intensity but not mutation rate | Q73428043 |
| | Stepwise chromatin remodelling by a cascade of transcription initiation of non-coding RNAs | Q33372325 |
| | Characterization of transcription from TATA-less promoters: identification of a new core promoter element XCPE2 and analysis of factor requirements | Q33425194 |
| | Dark matter transcripts: sound and fury, signifying nothing? | Q33587545 |
| | NRED: a database of long noncoding RNA expression | Q33845655 |
| | The RIDL hypothesis: transposable elements as functional domains of long noncoding RNAs | Q33967993 |
| | The Xist RNA gene evolved in eutherians by pseudogenization of a protein-coding gene | Q33996848 |
| | Negative correlation between expression level and evolutionary rate of long intergenic noncoding RNAs | Q34071155 |
| | Mammalian retroelements. | Q34153259 |
| | Comparative organization and the origin of noncoding regulatory RNA genes from X-chromosome inactivation center of human and mouse | Q34160161 |
| | Perspective: transposable elements, parasitic DNA, and genome evolution | Q34192362 |
| | Transcribed dark matter: meaning or myth? | Q34192913 |
| | Conserved function of lincRNAs in vertebrate embryonic development despite rapid sequence evolution | Q34242790 |
| | Imprinting along the Kcnq1 domain on mouse chromosome 7 involves repressive histone methylation and recruitment of Polycomb group complexes. | Q34363546 |
| | Computational prediction of polycomb-associated long non-coding RNAs | Q34427568 |
| | Rapid evolution of noncoding RNAs: lack of conservation does not mean lack of function | Q34467942 |
| | Inhibition of c-erbA mRNA splicing by a naturally occurring antisense RNA. | Q34507857 |
| | Non-coding-RNA regulators of RNA polymerase II transcription | Q34530471 |
| | Haemophilia A resulting from de novo insertion of L1 sequences represents a novel mechanism for mutation in man. | Q34553577 |
| | Purifying selection on splice-related motifs, not expression level nor RNA folding, explains nearly all constraint on human lincRNAs | Q34579243 |
| | Large intergenic non-coding RNA-RoR modulates reprogramming of human induced pluripotent stem cells | Q34581070 |
| | Repression of the human dihydrofolate reductase gene by a non-coding interfering transcript | Q34604327 |
| | The brain cytoplasmic RNA BC1 regulates dopamine D2 receptor-mediated transmission in the striatum | Q34663497 |
| | Transposable elements are major contributors to the origin, diversification, and regulation of vertebrate long noncoding RNAs | Q34699808 |
| | Human Alu RNA is a modular transacting repressor of mRNA transcription during heat shock | Q34757173 |
| | Alu elements in ANRIL non-coding RNA at chromosome 9p21 modulate atherogenic cell functions through trans-regulation of gene networks | Q34825023 |
| | Molecular domestication of transposable elements: from detrimental parasites to useful host genes. | Q34918319 |
| | A global view of genomic information--moving beyond the gene and the master regulator | Q35014896 |
| | Genome evolution | Q35195134 |
| | Long noncoding RNAs are rarely translated in two human cell lines | Q36201214 |
| | Transposable elements reveal a stem cell-specific class of long noncoding RNAs | Q36633093 |
| | RNomenclature | Q36688279 |
| | Control of myogenesis by rodent SINE-containing lncRNAs | Q36804118 |
| | The sequence of a large L1Md element reveals a tandemly repeated 5' end and several features found in retrotransposons | Q36908687 |
| P921 | main subject | non-coding RNA | Q427087 |
| P304 | page(s) | 71 | |
| P577 | publication date | 2015-06-09 | |
| P1433 | published in | Frontiers in Bioengineering and Biotechnology | Q21971197 |
| P1476 | title | Transposable Element Insertions in Long Intergenic Non-Coding RNA Genes | |
| P478 | volume | 3 | |