Perspective: transposable elements, parasitic DNA, and genome evolution

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Perspective: transposable elements, parasitic DNA, and genome evolution is …
instance of (P31):
review articleQ7318358
scholarly articleQ13442814

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P356DOI10.1111/J.0014-3820.2001.TB01268.X
P698PubMed publication ID11263730
P5875ResearchGate publication ID12068654

P50authorMargaret KidwellQ18356435
P2093author name stringLisch DR
P2860cites workMolecular domestication--more than a sporadic episode in evolution.Q52581934
Secretion of a murine retroviral Env associated with resistance to infection.Q53773918
Genetic variation of recent Alu insertions in human populationsQ57774723
Capture of retrotransposon DNA at the sites of chromosomal double-strand breaksQ58323760
The evolutionary dynamics of repetitive DNA in eukaryotesQ59090793
Phenotypic diversity mediated by the maize transposable elements Ac and Spm.Q39271760
Zebedee: a novel copia-Ty1 family of transposable elements in the genome of the medically important mosquito Aedes aegyptiQ39579304
Skeletal DNA and the evolution of genome sizeQ40335452
Retroelements, reverse transcriptase and evolutionQ40397724
The topology of the promoter of RNA polymerase II- and III-transcribed genes is modified by the methylation of 5'-CG-3' dinucleotidesQ40400455
Selfish DNA: the ultimate parasiteQ22122417
Selfish genes, the phenotype paradigm and genome evolutionQ22122418
Somatic mutations in the neurofibromatosis 1 gene in human tumorsQ24293243
The gene encoding the C gamma catalytic subunit of cAMP-dependent protein kinase is a transcribed retroposonQ24318785
On the possibility of constructive neutral evolutionQ28141783
SINE insertions: powerful tools for molecular systematicsQ28143764
Repetitive and Non-Repetitive DNA Sequences and a Speculation on the Origins of Evolutionary NoveltyQ28250804
Gene families: the taxonomy of protein paralogs and chimerasQ28255362
Gene Regulation for Higher Cells: A TheoryQ28256064
DNA shuffling of a family of genes from diverse species accelerates directed evolutionQ28259708
RAG-1 and RAG-2, adjacent genes that synergistically activate V(D)J recombinationQ28289238
Transmission modes and evolution of the parasitism-mutualism continuumQ28295478
Abundance of an Endogenous Retroviral Envelope Protein in Placental Trophoblasts Suggests a Biological FunctionQ28295671
Tiggers and DNA transposon fossils in the human genomeQ28776076
Origin of the Alu family: a family of Alu-like monomers gave birth to the left and the right arms of the Alu elementsQ28776423
Ubiquitous mammalian-wide interspersed repeats (MIRs) are molecular fossils from the mesozoic eraQ28776504
The significance of responses of the genome to challengeQ28913697
Controlling elements and the geneQ28913699
Telomerase catalytic subunit homologs from fission yeast and humanQ29615387
An alternative pathway for yeast telomere maintenance rescues est1- senescenceQ29616135
Somatic generation of antibody diversityQ29616439
Alu repeats and human diseaseQ29618262
Cytosine methylation and the ecology of intragenomic parasitesQ29618264
Human LINE retrotransposons generate processed pseudogenesQ29618327
Role for DNA methylation in genomic imprintingQ29618669
Exon shuffling by L1 retrotranspositionQ29622913
The variety of human virus evolutionQ30011193
Reversing time: origin of telomeraseQ30471858
Genomic and evolutionary analysis of Feilai, a diverse family of highly reiterated SINEs in the yellow fever mosquito, Aedes aegyptiQ30714853
Presence of miniature inverted-repeat transposable elements (MITEs) in the genome of Arabidopsis thaliana: characterisation of the Emigrant family of elementsQ31978853
Chromosome-specific molecular organization of maize (Zea mays L.) centromeric regionsQ31991592
Structure of the chromosome VII centromere region in Neurospora crassa: degenerate transposons and simple repeatsQ32036956
Undermethylation associated with retroelement activation and chromosome remodelling in an interspecific mammalian hybridQ32063623
Position effects and epigenetic silencing of plant transgenesQ33538759
Revising the selfish DNA hypothesis: new evidence on accumulation of transposable elements in heterochromatinQ33594313
Intrachromosomal rearrangements mediated by hobo transposons in Drosophila melanogasterQ33680665
Extensive, nonrandom diversity of excision footprints generated by Ds-like transposon Ascot-1 suggests new parallels with V(D)J recombinationQ33775068
Regulatory changes as a consequence of transposon insertionQ33778110
RNAs from all categories generate retrosequences that may be exapted as novel genes or regulatory elementsQ33778366
Genetic variation: molecular mechanisms and impact on microbial evolutionQ33820587
Invasion of a multitude of genetic niches by mobile endonuclease genesQ33885297
Transposable elements and host genome evolutionQ33890168
Fission yeast homologs of human CENP-B have redundant functions affecting cell growth and chromosome segregationQ33962852
Molecular structure of a functional Drosophila centromereQ34065770
The evolution of virulence: a unifying link between parasitology and ecologyQ34288239
Methylation and imprinting: from host defense to gene regulation?Q34363070
Transposable elements are stable structural components of Drosophila melanogaster heterochromatinQ34380234
LINE-1 elements at the sites of molecular rearrangements in Alport syndrome-diffuse leiomyomatosisQ34388506
Molecular cloning of cDNA for CENP-B, the major human centromere autoantigenQ34393316
DNA sequence insertion and evolutionary variation in gene regulationQ34395561
Nested retrotransposons in the intergenic regions of the maize genomeQ34402279
Unequal homologous recombination between LINE-1 elements as a mutational mechanism in human genetic diseaseQ34463149
The impact of L1 retrotransposons on the human genomeQ34468340
Extended life-span and stress resistance in the Drosophila mutant methuselahQ34477849
Tightly regulated, developmentally specific expression of the first open reading frame from LINE-1 during mouse embryogenesisQ34628234
Matrix attachment regions and structural colinearity in the genomes of two grass species.Q34655072
Consensus inverted terminal repeat sequence of Paramecium IESs: resemblance to termini of Tc1-related and Euplotes Tec transposons.Q34755067
Gene number, noise reduction and biological complexityQ40514856
Epigenetic regulation of the maize Spm transposonQ40520011
Physiological stresses increase mouse short interspersed element (SINE) RNA expression in vivoQ40630548
Lateral transfer in natural populations of eukaryotesQ40722162
The strange phylogenies of transposable elements: are horizontal transfers the only explantation?Q40735051
Genomes were forged by massive bombardments with retroelements and retrosequencesQ40751648
Retroelements in the human MHC class II regionQ40863445
The first intron of the myelin proteolipid protein gene confers cell type-specific expression by a transcriptional repression mechanism in non-expressing cell typesQ40874690
Retrohoming: cDNA-mediated mobility of group II introns requires a catalytic RNA.Q40939387
Cases of ancient mobile element DNA insertions that now affect gene regulationQ41010165
Transposition mediated by RAG1 and RAG2 and its implications for the evolution of the immune systemQ41011364
LTR-retrotransposons and MITEs: important players in the evolution of plant genomesQ41068242
Turned on by stress. Plant retrotransposonsQ41110778
The origins of V(D)J recombinationQ41329165
Imprinting in clusters: lessons from Beckwith-Wiedemann syndromeQ41566242
Molecular domestication of mobile elementsQ41688083
Transposable element-host interactions: regulation of insertion and excisionQ41689480
Mobile elements inserted in the distant past have taken on important functionsQ41699977
Transposons in place of telomeric repeats at a Drosophila telomereQ42610468
LINE-1: a human transposable elementQ42611087
Zepp, a LINE-like retrotransposon accumulated in the Chlorella telomeric regionQ42622633
The evolution of MHC diversity by segmental duplication and transposition of retroelements.Q42669974
Structural, genomic, and phylogenetic analysis of Lian, a novel family of non-LTR retrotransposons in the yellow fever mosquito, Aedes aegyptiQ42680422
A new retrotransposable human L1 element from the LRE2 locus on chromosome 1q produces a chimaeric insertionQ42693461
Genomic characterization of the region between HLA-B and TNF: implications for the evolution of multicopy gene familiesQ44367449
An ancient provirus has imposed androgen regulation on the adjacent mouse sex-limited protein geneQ44863120
Sequence and analysis of chromosome 2 of the plant Arabidopsis thalianaQ44963941
Modulation of immune responses to parasitoids by polydnavirusesQ46050678
Tissue-specific accumulation of MURB, a protein encoded by MuDR, the autonomous regulator of the Mutator transposable element familyQ46088617
Repeated sequence target sites for maternal DNA-binding proteins in genes activated in early sea urchin developmentQ46113260
Evolution of a bacteria/plasmid associationQ46676230
Strategies for the in vitro evolution of protein function: enzyme evolution by random recombination of improved sequencesQ46855416
Structure of the segmentation gene paired and the Drosophila PRD gene set as part of a gene networkQ47069959
The evolution of an intron: analysis of a long, deletion-prone intron in the human dystrophin geneQ47333248
DNA transposition by the RAG1 and RAG2 proteins: a possible source of oncogenic translocationsQ47750695
Internal eliminated sequences interrupting the Oxytricha 81 locus: allelic divergence, conservation, conversions, and possible transposon originsQ47815545
Evolutionary dynamics of the SGM transposon family in the Drosophila obscura species groupQ47815964
Evidence for the role of recombination in the regulatory evolution of Saccharomyces cerevisiae Ty elementsQ47843738
A satellite DNA containing CENP-B box-like motifs is present in the antarctic scallop Adamussium colbeckiQ47867541
A P element has induced intron formation in DrosophilaQ47913927
Capture of a genomic HMG domain sequence by the En/Spm-related transposable element Tpn1 in the Japanese morning gloryQ47964834
Nonmethylated transposable elements and methylated genes in a chordate genomeQ47987079
Short inverted-repeat transposable elements in teleost fish and implications for a mechanism of their amplificationQ47997908
Something from nothing: the evolution and utility of satellite repeatsQ48013054
L1 repeat is a basic unit of heterochromatin satellites in cetaceansQ48038251
Centromeres, CENP-B and Tigger too.Q48052113
High intrinsic rate of DNA loss in DrosophilaQ48057637
Retrotransposon reverse-transcriptase-mediated repair of chromosomal breaksQ48058936
Epileptic seizures caused by inactivation of a novel gene, jerky, related to centromere binding protein-B in transgenic miceQ48071134
A novel group of families of short interspersed repetitive elements (SINEs) in Xenopus: evidence of a specific target site for DNA-mediated transposition of inverted-repeat SINEsQ48073725
Structure and expression of clustered P element homologues in Drosophila subobscura and Drosophila guancheQ48074399
Tourist: a large family of small inverted repeat elements frequently associated with maize genesQ48156212
A tissue-specific transcription enhancer element is located in the major intron of a rearranged immunoglobulin heavy chain geneQ48397674
Cleavage at a V(D)J recombination signal requires only RAG1 and RAG2 proteins and occurs in two stepsQ49167454
Cytotype control of Drosophila P element transposition: the 66 kd protein is a repressor of transposase activity.Q52449696
The absence of detectable methylated bases in Drosophila melanogaster DNA.Q52527850
The Ty1-copia group retrotransposons of Allium cepa are distributed throughout the chromosomes but are enriched in the terminal heterochromatin.Q52550896
Intragenomic distribution and stability of transposable elements in euchromatin and heterochromatin of Drosophila melanogaster: non-LTR retrotransposon.Q52553655
Heterochromatin protein 1 binds transgene arrays.Q52567649
Recent, extensive, and preferential insertion of members of the miniature inverted-repeat transposable element family Heartbreaker into genic regions of maizeQ35009215
Frequent human genomic DNA transduction driven by LINE-1 retrotranspositionQ35026231
A hierarchical approach to protein molecular evolutionQ35056515
Rodent BC1 RNA gene as a master gene for ID element amplificationQ35185755
Mobile elements and chromosomal evolution in the virilis group of DrosophilaQ35280826
The relationship between genetic and physical distances in the cloned a1-sh2 interval of the Zea mays L. genome.Q35692044
Retrotransposons in the flanking regions of normal plant genes: a role for copia-like elements in the evolution of gene structure and expressionQ35939137
Transposition of the LINE-like retrotransposon TART to Drosophila chromosome terminiQ35988239
Transposable elements as sources of variation in animals and plantsQ36010477
The role of robustness and changeability on the origin and evolution of genetic codesQ36064324
Directed evolution of a fucosidase from a galactosidase by DNA shuffling and screeningQ36137488
A unique sequence related to the ecotropic murine leukemia virus is associated with the Fv-4 resistance geneQ36254251
Neocentromere-mediated chromosome movement in maizeQ36274334
High genetic instability of heterochromatin after transposition of the LINE-like I factor in Drosophila melanogasterQ36300860
Cloning of inversion breakpoints in the Anopheles gambiae complex traces a transposable element at the inversion junctionQ36525010
Purification and characterization of a CENP-B homologue protein that binds to the centromeric K-type repeat DNA of Schizosaccharomyces pombeQ36541953
Germ line-specific expression of intracisternal A-particle retrotransposons in transgenic miceQ36561660
Three novel families of miniature inverted-repeat transposable elements are associated with genes of the yellow fever mosquito, Aedes aegyptiQ36658748
The pvB370 BamHI satellite DNA family of the Drosophila virilis group and its evolutionary relation to mobile dispersed genetic pDv elementsQ36671534
Explosive invasion of plant mitochondria by a group I intronQ36732891
Stowaway: a new family of inverted repeat elements associated with the genes of both monocotyledonous and dicotyledonous plantsQ36737301
Positional cloning of the mouse retrovirus restriction gene Fv1.Q36812909
RAG3 gene and transcriptional regulation of the pyruvate decarboxylase gene in Kluyveromyces lactisQ36818140
A new family of site-specific retrotransposons, SART1, is inserted into telomeric repeats of the silkworm, Bombyx moriQ36852682
Escape from evolutionary stasis by transposon-mediated deleterious mutationsQ36880049
Elements in microbial evolutionQ37354164
Reduced DNA methylation in Arabidopsis thaliana results in abnormal plant developmentQ37405920
Induction of centromeric activity in maize by suppressor of meiotic drive 1.Q37408565
P-element homologous sequences are tandemly repeated in the genome of Drosophila guancheQ37599742
Eukaryotic transposable elements and genome evolutionQ38272219
Presence and abundance of CENP-B box sequences in great ape subsets of primate-specific alpha-satellite DNA.Q38290990
Polymorphisms and genomic organization of repetitive DNA from centromeric regions of Arabidopsis chromosomesQ38329719
Organization of the 1.9-kb repeat unit RCE1 in the centromeric region of rice chromosomesQ38501422
Drosophila telomeres: new views on chromosome evolution.Q38561575
P433issue1
P1104number of pages24
P304page(s)1-24
P577publication date2001-01-01
P1433published inEvolutionQ4038411
P1476titlePerspective: transposable elements, parasitic DNA, and genome evolution
P478volume55

Reverse relations

cites work (P2860)
Q43494494'Junk' DNA and phenotypic evolution in Silene section Siphonomorpha
Q42924129'Satellite DNA transcripts have diverse biological roles in Drosophila'.
Q371731473'UTR-located ALU elements: donors of potential miRNA target sites and mediators of network miRNA-based regulatory interactions
Q28608107A Novel Terminal-Repeat Retrotransposon in Miniature (TRIM) Is Massively Expressed in Echinococcus multilocularis Stem Cells
Q41405238A functional role for transposases in a large eukaryotic genome
Q39639675A novel class of miniature inverted repeat transposable elements (MITEs) that contain hitchhiking (GTCY)n microsatellites
Q45356927A rapid decrease in number of the complete ninja element and concomitant increase of the defective element in a strain of Drosophila simulans
Q37324379A recent adaptive transposable element insertion near highly conserved developmental loci in Drosophila melanogaster
Q38387036A survey of transposable element classification systems--a call for a fundamental update to meet the challenge of their diversity and complexity.
Q46179916A transcriptionally active copia-like retroelement in Citrus limon.
Q37619228Accommodating the load: The transposable element content of very large genomes
Q28603245Accurate Transposable Element Annotation Is Vital When Analyzing New Genome Assemblies
Q44835568Activation of a rice endogenous retrotransposon Tos17 in tissue culture is accompanied by cytosine demethylation and causes heritable alteration in methylation pattern of flanking genomic regions
Q33245406Alu elements contain many binding sites for transcription factors and may play a role in regulation of developmental processes
Q33262669An analysis of mobile genetic elements in three Plasmodium species and their potential impact on the nucleotide composition of the P. falciparum genome
Q56992563An introduction to the vast world of transposable elements – what about the diatoms?
Q35139009Analysis of insertion sequences in thermophilic cyanobacteria: exploring the mechanisms of establishing, maintaining, and withstanding high insertion sequence abundance
Q30818151Analysis of similarity within 142 pairs of orthologous intergenic regions of Caenorhabditis elegans and Caenorhabditis briggsae
Q33877367Ancestral repeats have shaped epigenome and genome composition for millions of years in Arabidopsis thaliana
Q36498920Applying mobile genetic elements for genome analysis and evolution
Q34996975Assessment and reconstruction of novel HSP90 genes: duplications, gains and losses in fungal and animal lineages
Q31016080BEL/Pao retrotransposons in metazoan genomes
Q28657639Bacterial genome instability
Q24545998Birth of a chimeric primate gene by capture of the transposase gene from a mobile element
Q64965393Birth, School, Work, Death, and Resurrection: The Life Stages and Dynamics of Transposable Element Proliferation.
Q37616629BuT2 is a member of the third major group of hAT transposons and is involved in horizontal transfer events in the genus Drosophila.
Q48082049Causes of insertion sequences abundance in prokaryotic genomes
Q33715125Cell size as a link between noncoding DNA and metabolic rate scaling
Q21198753Characterization and potential functional significance of human-chimpanzee large INDEL variation
Q52852291Characterization of irritans mariner-like elements in the olive fruit fly Bactrocera oleae (Diptera: Tephritidae): evolutionary implications.
Q42648306Characterization of new hAT transposable elements in 12 Drosophila genomes
Q52621574Characterization of transcriptional activation and inserted-into-gene preference of various transposable elements in the Brassica species.
Q43502291Characterizing the composition and evolution of homoeologous genomes in hexaploid wheat through BAC-end sequencing on chromosome 3B.
Q37202290Chromodomains and LTR retrotransposons in plants
Q33979735Coexistence of trichome variation in a natural plant population: a combined study using ecological and candidate gene approaches.
Q46421915Collinearity between potato (Solanum tuberosum L.) and wild relatives assessed by comparative cytogenetic mapping
Q24813273Combined evidence annotation of transposable elements in genome sequences
Q36377751Combining Mass Spectrometric Metabolic Profiling with Genomic Analysis: A Powerful Approach for Discovering Natural Products from Cyanobacteria
Q57800851Comparative analysis of repetitive sequences among species from the potato and the tomato clades
Q89701667Complex Evolutionary History of Mboumar, a Mariner Element Widely Represented in Ant Genomes
Q42644440Conserved motifs and dynamic aspects of the terminal inverted repeat organization within Bari-like transposons
Q92915469DNA transposon invasion and microsatellite accumulation guide W chromosome differentiation in a Neotropical fish genome
Q29617153DNA transposons and the evolution of eukaryotic genomes
Q28751993DNA transposons: nature and applications in genomics
Q39229220Degeneration of a homing endonuclease and its target sequence in a wild yeast strain
Q28648065Detecting endogenous retrovirus-driven tissue-specific gene transcription
Q52699869Detection of P element transcripts in embryos of Drosophila melanogaster and D. willistoni.
Q31155225Discovery and assembly of repeat family pseudomolecules from sparse genomic sequence data using the Assisted Automated Assembler of Repeat Families (AAARF) algorithm
Q47434809Discovery of novel genes derived from transposable elements using integrative genomic analysis
Q30426258Distinguishing ecological from evolutionary approaches to transposable elements.
Q42630683Distribution dynamics of the Tnt1 retrotransposon in tobacco
Q33850911Diversity and evolution of mariner-like elements in aphid genomes
Q48795964Domesticated P elements in the Drosophila montium species subgroup have a new function related to a DNA binding property
Q51743629Duplicate gene evolution toward multiple fates at the Drosophila melanogaster HIP/HIP-Replacement locus.
Q42117447Duplication count distributions in DNA sequences
Q35874389Dynamics of bacterial insertion sequences: can transposition bursts help the elements persist?
Q33470970Dynamics of transposable elements: towards a community ecology of the genome
Q29619890Endogenous viruses: insights into viral evolution and impact on host biology
Q28601408Enrichment analysis of Alu elements with different spatial chromatin proximity in the human genome
Q24564861Epigenetics and its implications for plant biology 2. The 'epigenetic epiphany': epigenetics, evolution and beyond
Q36389323Evaluating the protein coding potential of exonized transposable element sequences
Q24805200Evolution and distribution of RNA polymerase II regulatory sites from RNA polymerase III dependant mobile Alu elements
Q90975451Evolution and diversity of transposable elements in fish genomes
Q51947595Evolution in biological and nonbiological systems under different mechanisms of generation and inheritance.
Q42658397Evolution of full-length and deleted forms of the mariner-like element, Botmar1, in the Genome of the bumble bee, Bombus terrestris (Hymenoptera: Apidae).
Q30670491Evolution of genome-phenome diversity under environmental stress
Q28650495Evolutionary dynamics of hAT DNA transposon families in Saccharomycetaceae
Q37596083Evolutionary dynamics of insertion sequences in Helicobacter pylori.
Q34833252Evolutionary dynamics of retrotransposable elements Rex1, Rex3 and Rex6 in neotropical cichlid genomes.
Q33808851Evolutionary dynamics of the Ty3/gypsy LTR retrotransposons in the genome of Anopheles gambiae
Q37809269Evolutionary dynamics of transposable elements in a small RNA world
Q28757513Evolutionary dynamics of transposable elements in the short-tailed opossum Monodelphis domestica
Q38621273Evolutionary history of the mariner element galluhop in avian genomes
Q45918618Evolutionary implications of multiple SINE insertions in an intronic region from diverse mammals.
Q33335382Evolutionary rates and patterns for human transcription factor binding sites derived from repetitive DNA
Q34649872Evolutionary tinkering with transposable elements
Q38164153Evolutionary transitions in individuality: insights from transposable elements
Q33295352Exonization of the LTR transposable elements in human genome
Q28655926Explaining bathymetric diversity patterns in marine benthic invertebrates and demersal fishes: physiological contributions to adaptation of life at depth
Q27490892Exploring Repetitive DNA Landscapes Using REPCLASS, a Tool That Automates the Classification of Transposable Elements in Eukaryotic Genomes
Q56992558Expression of the retrotransposonsSurcoufandBlackbeardin the marine diatomPhaeodactylum tricornutumunder thermal stress
Q47830904FB elements can promote exon shuffling: a promoter-less white allele can be reactivated by FB mediated transposition in Drosophila melanogaster.
Q21203760Families of transposable elements, population structure and the origin of species
Q34648165First comparative transcriptomic analysis of wild adult male and female Lutzomyia longipalpis, vector of visceral leishmaniasis
Q21267189Fosmid library end sequencing reveals a rarely known genome structure of marine shrimp Penaeus monodon
Q36193675From the margins of the genome: mobile elements shape primate evolution
Q42489598Function of the genetic element 'Mona' associated with fungicide resistance in Monilinia fructicola
Q52745440General survey of hAT transposon superfamily with highlight on hobo element in Drosophila.
Q28682334Genesis and regulatory wiring of retroelement-derived domesticated genes: a phylogenomic perspective
Q42239689Genetic Drift, Not Life History or RNAi, Determine Long-Term Evolution of Transposable Elements
Q35137510Genetics of cryptic speciation within an Arctic mustard, Draba nivalis
Q22122336Genetics: Junk DNA as an evolutionary force
Q50986417Genome size correlates with reproductive fitness in seed beetles.
Q38622812Genome size in arthropods; different roles of phylogeny, habitat and life history in insects and crustaceans
Q35088732Genome-Wide Identification and Classification of MicroRNAs Derived from Repetitive Elements
Q92565403Genome-Wide Identification of Microsatellites and Transposable Elements in the Dromedary Camel Genome Using Whole-Genome Sequencing Data
Q28510627Genome-wide B1 retrotransposon binds the transcription factors dioxin receptor and Slug and regulates gene expression in vivo
Q35198293Genome-wide analysis of mobile genetic element insertion sites
Q36282101Genome-wide analysis of transposable elements in the coffee berry borer Hypothenemus hampei (Coleoptera: Curculionidae): description of novel families.
Q39172561Genome-wide identification and expression profiling of DNA methyltransferase gene family in maize
Q45487545Genomic amplification of the Gret1 retroelement in white-fruited accessions of wild vitis and interspecific hybrids
Q28817262Genomic characterization of Ensifer aridi, a proposed new species of nitrogen-fixing rhizobium recovered from Asian, African and American deserts.
Q34185737Genomic diversity in two related plant species with and without sex chromosomes--Silene latifolia and S. vulgaris
Q51644456Genomics in the light of evolutionary transitions.
Q49767833Glassy dynamics in the adaptive immune response prevents autoimmune disease
Q34511101HERV-K(HML-2), a seemingly silent subtenant - but still waters run deep
Q40082961Hawaiian Drosophila genomes: size variation and evolutionary expansions
Q33259824Heat-shock promoters: targets for evolution by P transposable elements in Drosophila
Q57177754Hemochorial placentation: development, function, and adaptations
Q28686989Hidden magicians of genome evolution
Q33378679High rate of recent transposable element-induced adaptation in Drosophila melanogaster
Q52703732Hosimary: a new hAT transposon group involved in horizontal transfer.
Q93085933Host-transposon interactions: conflict, cooperation, and cooption
Q41089812Hsp90 and Physiological Stress Are Linked to Autonomous Transposon Mobility and Heritable Genetic Change in Nematodes
Q36109600Human endogenous retroviruses and their possible impact on dermatology.
Q47978465IHF is the limiting host factor in transposition of Pseudomonas putida transposon Tn4652 in stationary phase
Q28601586Identification and characterization of abundant repetitive sequences in Eragrostis tef cv. Enatite genome
Q41638647Identification and chromosome mapping of repetitive elements in the Astyanax scabripinnis (Teleostei: Characidae) species complex
Q51554989Identification of Transcription Factor Binding Sites Derived from Transposable Element Sequences Using ChIP-seq
Q47988068Identification of Ty1-copia retrotransposons in three ectomycorrhizal basidiomycetes: evolutionary relationships and use as molecular markers
Q33235037Identifying repeat domains in large genomes
Q37638210Identifying repeats and transposable elements in sequenced genomes: how to find your way through the dense forest of programs.
Q34134111Illumina TruSeq synthetic long-reads empower de novo assembly and resolve complex, highly-repetitive transposable elements
Q34254216Impact of foreign DNA integration on tumor biology and on evolution via epigenetic alterations
Q34442055Impact of transposable elements on the evolution of mammalian gene regulation
Q35852303In Depth Characterization of Repetitive DNA in 23 Plant Genomes Reveals Sources of Genome Size Variation in the Legume Tribe Fabeae.
Q24809485Insertion bias and purifying selection of retrotransposons in the Arabidopsis thaliana genome
Q37548915Insertion sequence distribution bias in Archaea
Q34168666Insights into the transposable mobilome of Paracoccus spp. (Alphaproteobacteria)
Q34477499Intrinsic characteristics of neighboring DNA modulate transposable element activity in Drosophila melanogaster
Q30980345Is small indel bias a determinant of genome size?
Q47788081Jittery, a Mutator distant relative with a paradoxical mobile behavior: excision without reinsertion
Q52596119Large Diversity of Nonstandard Genes and Dynamic Evolution of Chloroplast Genomes in Siphonous Green Algae (Bryopsidales, Chlorophyta).
Q36439815Long-term and short-term evolutionary impacts of transposable elements on Drosophila
Q28727809Losing identity: structural diversity of transposable elements belonging to different classes in the genome of Anopheles gambiae
Q38347641MAX, a novel retrotransposon of the BEL-Pao family, is nested within the Bari1 cluster at the heterochromatic h39 region of chromosome 2 in Drosophila melanogaster.
Q36000665Male germline control of transposable elements
Q41786794Mar, a MITE family of hAT transposons in Drosophila
Q35629302Massive amplification of rolling-circle transposons in the lineage of the bat Myotis lucifugus
Q62964509Meiotic silencing by unpaired DNA
Q31138327Metagenomic analysis of size-fractionated picoplankton in a marine oxygen minimum zone
Q64059832Microsatellite Borders and Micro-sequence Conservation in Juglans
Q21198751Mobile DNA and the TE-Thrust hypothesis: supporting evidence from the primates
Q30428528Mobilomics in Saccharomyces cerevisiae strains
Q37197116Molecular Evolution of Drosophila Germline Stem Cell and Neural Stem Cell Regulating Genes
Q33292644Molecular analysis of a novel tandemly organized repetitive DNA sequence in Citrus limon (L.) Burm.
Q42666672Molecular characterization of mariner-like elements in emerald ash borer, Agrilus planipennis (Coleoptera, Polyphaga).
Q35163088Molecular characterization of the genomic region linked with apomixis in Pennisetum/Cenchrus
Q37255094Molecular evolution and phylogeny of the RPB2 gene in the genus Hordeum
Q35143591Molecular paleontology of transposable elements in the Drosophila melanogaster genome
Q59337341Mollusc genomes reveal variability in patterns of LTR-retrotransposons dynamics
Q38417739Nanger, Eudorcas, Gazella, and Antilope form a well-supported chromosomal clade within Antilopini (Bovidae, Cetartiodactyla).
Q35038542Natural history of transposition in the green alga Chlamydomonas reinhardtii: use of the AMT4 locus as an experimental system
Q41971208Natural selection on gene function drives the evolution of LTR retrotransposon families in the rice genome
Q51750516Nested Ty3-gypsy retrotransposons of a single Beta procumbens centromere contain a putative chromodomain.
Q60146999Neutral Theory, Transposable Elements, and Eukaryotic Genome Evolution.
Q35821676Nonadaptive explanations for signatures of partial selective sweeps in Drosophila
Q44944883Noncoding RNAs: persistent viral agents as modular tools for cellular needs
Q54243559Nonneutral GC3 and retroelement codon mimicry in Phytophthora.
Q36098967Nonsense-mediated RNA decay: a molecular system micromanaging individual gene activities and suppressing genomic noise
Q35846296Origin and evolution of human microRNAs from transposable elements.
Q46356906Origin of a rapidly evolving homeostatic control system programming testis function
Q29617225Origin of a substantial fraction of human regulatory sequences from transposable elements
Q26824449Paleovirology of 'syncytins', retroviral env genes exapted for a role in placentation
Q47400161Parasitism, the diversity of life, and paleoparasitology
Q35867687Patterns of repeat-induced point mutation in transposable elements of basidiomycete fungi
Q43480410Phylogenomic analysis of chromoviruses
Q54398285Physical properties of DNA components affecting the transposition efficiency of the mariner Mos1 element.
Q80773252Plant cytosine-5 DNA methyltransferases: structure, function, and molecular evolution
Q38110530Polyploidy is genetic hence may cause non-adaptive radiations, whereas pseudopolyploidy is genomic hence may cause adaptive non-radiations
Q82230505Population frequencies of transposable elements in selfing and outcrossing Caenorhabditis nematodes
Q35083007Population genetics models of competition between transposable element subfamilies
Q34823735Population genomics of transposable elements in Drosophila melanogaster.
Q39109579Positive selection on transposase genes of insertion sequences in the Crocosphaera watsonii genome
Q34075724Prediction of transposable element derived enhancers using chromatin modification profiles
Q48062220Profile of the mosaic element BTMR1 in the genome of the bumble bee Bombus terrestris (Hymenoptera: Apidae).
Q28831298Profuse evolutionary diversification and speciation on volcanic islands: transposon instability and amplification bursts explain the genetic paradox
Q33227185REM1, a new type of long terminal repeat retrotransposon in Chlamydomonas reinhardtii.
Q57019817RNA Networks as Digital Control Circuits of Nuclear Functions
Q57288715Rapid expansion of a highly germline-expressed mariner element acquired by horizontal transfer in the fire ant genome
Q44139655Reciprocal sequence exchange between non-retro viruses and hosts leading to the appearance of new host phenotypes
Q46572109Reconstructing the evolutionary history of gypsy retrotransposons in the Périgord black truffle (Tuber melanosporum Vittad.).
Q39142974Reliability of the nanopheres-DNA immunization technology to produce polyclonal antibodies directed against human neogenic proteins
Q34065350Repetitive DNA elements, nucleosome binding and human gene expression
Q33315562Repetitive element-mediated recombination as a mechanism for new gene origination in Drosophila
Q38937848Resolving fine-grained dynamics of retrotransposons: comparative analysis of inferential methods and genomic resources.
Q35805976Retroelement distributions in the human genome: variations associated with age and proximity to genes
Q82880698Retrotransposon sequence variation in four asexual plant species
Q25255710Retroviral elements and their hosts: insertional mutagenesis in the mouse germ line
Q50787017Role of DNA methylation in growth and differentiation in Physcomitrella patens and characterization of cytosine DNA methyltransferases.
Q48280058S-element insertions are associated with the evolution of the Hsp70 genes in Drosophila melanogaster
Q36689328SINEs of progress: Mobile element applications to molecular ecology
Q34998054Segmental duplications in euchromatic regions of human chromosome 5: a source of evolutionary instability and transcriptional innovation
Q34574805Self-synthesizing DNA transposons in eukaryotes
Q50335072Selfish genetic elements and the gene’s-eye view of evolution
Q51877826Selfish genetic elements favor the evolution of a distinction between soma and germline.
Q28742794Selfish genetic elements, genetic conflict, and evolutionary innovation
Q38822875Senescence Meets Dedifferentiation
Q46237996Sequence diversity of a domesticated transposase gene, MUG1, in Oryza species
Q37596279Sequence organization and insertion specificity of the novel chimeric ISHp609 transposable element of Helicobacter pylori.
Q42685576Species sympatry and horizontal transfers of Mariner transposons in marine crustacean genomes.
Q34104183Structural characterization of helitrons and their stepwise capturing of gene fragments in the maize genome
Q40481970Structural features of conopeptide genes inferred from partial sequences of the Conus tribblei genome.
Q33375773Survey of repetitive sequences in Silene latifolia with respect to their distribution on sex chromosomes.
Q22122020Synergy between sequence and size in Large-scale genomics
Q28741643T-lex: a program for fast and accurate assessment of transposable element presence using next-generation sequencing data
Q45854044TEtools facilitates big data expression analysis of transposable elements and reveals an antagonism between their activity and that of piRNA genes
Q47826784Tana1, a new putatively active Tc1-like transposable element in the genome of sturgeons.
Q28076462Targeted Cancer Therapy: Vital Oncogenes and a New Molecular Genetic Paradigm for Cancer Initiation Progression and Treatment
Q42640984Teleost fish genomes contain a diverse array of L1 retrotransposon lineages that exhibit a low copy number and high rate of turnover.
Q34478652The 4D nucleome: Evidence for a dynamic nuclear landscape based on co-aligned active and inactive nuclear compartments
Q59888641The Association Between Breeding System and Transposable Element Dynamics in Daphnia Pulex
Q22066092The C-value enigma in plants and animals: a review of parallels and an appeal for partnership
Q42642679The GC-rich transposon Bytmar1 from the deep-sea hydrothermal crab, Bythograea thermydron, may encode three transposase isoforms from a single ORF.
Q35849014The Importance of Fossils in Understanding the Evolution of Parasites and Their Vectors
Q33290342The Juan non-LTR retrotransposon in mosquitoes: genomic impact, vertical transmission and indications of recent and widespread activity
Q90188013The Telomere Paradox: Stable Genome Preservation with Rapidly Evolving Proteins
Q46924603The Tvv1 retrotransposon family is conserved between plant genomes separated by over 100 million years
Q37442744The adaptive role of transposable elements in the Drosophila genome
Q22065246The case for junk DNA
Q36052156The dynamics of the roo transposable element in mutation-accumulation lines and segregating populations of Drosophila melanogaster.
Q34569974The dynamics of transposable elements in structured populations
Q35082947The fate of transposable elements in asexual populations
Q38216621The genome as a developmental organ.
Q28754467The genome sizes of megabats (Chiroptera: Pteropodidae) are remarkably constrained
Q52692382The hobo-related elements in the melanogaster species group.
Q59693328The impact of genome defense on mobile elements in Microbotryum
Q45050393The non-LTR retrotransposon R2 in termites (Insecta, Isoptera): characterization and dynamics
Q34376988The origin and evolution of six miniature inverted-repeat transposable elements in Bombyx mori and Rhodnius prolixus.
Q26851498The other face of restriction: modification-dependent enzymes
Q37412262The role of repetitive DNA in structure and evolution of sex chromosomes in plants.
Q22122375The role of selfish genetic elements in eukaryotic evolution
Q34770063The struggle for life of the genome's selfish architects
Q30492223The tempo and mode of evolution of transposable elements as revealed by molecular phylogenies reconstructed from mosquito genomes
Q34023612Tm1: a mutator/foldback transposable element family in root-knot nematodes
Q35074855Tracing floral adaptations from ecology to molecules
Q30653831Transposable Element Insertions in Long Intergenic Non-Coding RNA Genes
Q34972935Transposable element derived DNaseI-hypersensitive sites in the human genome.
Q34007229Transposable element dynamics among asymbiotic and ectomycorrhizal Amanita fungi.
Q52662835Transposable element orientation bias in the Drosophila melanogaster genome.
Q33453627Transposable elements and an epigenetic basis for punctuated equilibria
Q33881233Transposable elements and factors influencing their success in eukaryotes
Q38116552Transposable elements and microevolutionary changes in natural populations
Q28756349Transposable elements and the evolution of regulatory networks
Q28710587Transposable elements and viruses as factors in adaptation and evolution: an expansion and strengthening of the TE-Thrust hypothesis
Q33279847Transposable elements are enriched within or in close proximity to xenobiotic-metabolizing cytochrome P450 genes
Q28660225Transposable elements: from DNA parasites to architects of metazoan evolution
Q37470360Transposable elements: powerful facilitators of evolution
Q34917208Transposon domestication versus mutualism in ciliate genome rearrangements
Q34347048Transposon insertion sequencing: a new tool for systems-level analysis of microorganisms.
Q33935404Transposons, environmental changes, and heritable induced phenotypic variability.
Q30961710Tropism switching in Bordetella bacteriophage defines a family of diversity-generating retroelements
Q36370833Unique transposon landscapes are pervasive across Drosophila melanogaster genomes
Q92914698Unusual genome expansion and transcription suppression in ectomycorrhizal Tricholoma matsutake by insertions of transposable elements
Q38753540VHICA, a New Method to Discriminate between Vertical and Horizontal Transposon Transfer: Application to the Mariner Family within Drosophila.
Q36014539What Can Domesticated Genes Tell Us about the Intron Gain in Mammals?
Q27489427What can you do with 0.1× genome coverage? A case study based on a genome survey of the scuttle fly Megaselia scalaris (Phoridae)
Q28959214Why Do We Name Organisms? Some Reminders from the past
Q52701237hAT transposable elements and their derivatives: an analysis in the 12 Drosophila genomes.
Q36512094p53 cooperates with DNA methylation and a suicidal interferon response to maintain epigenetic silencing of repeats and noncoding RNAs

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