| review article | Q7318358 |
| scholarly article | Q13442814 |
| P50 | author | Karsten Rippe | Q38800586 |
| P2093 | author name string | Barbara Hübner | |
| Marion Cremer | |||
| Thomas Cremer | |||
| Yolanda Markaki | |||
| Christoph Cremer | |||
| Michael Sterr | |||
| Hilmar Strickfaden | |||
| Daniel Smeets | |||
| Jens Popken | |||
| P2860 | cites work | Common themes and cell type specific variations of higher order chromatin arrangements in the mouse | Q21284165 |
| Diffusion-Driven Looping Provides a Consistent Framework for Chromatin Organization | Q21562174 | ||
| The case for junk DNA | Q22065246 | ||
| Half a century of "the nuclear matrix" | Q24548384 | ||
| Subdiffraction multicolor imaging of the nuclear periphery with 3D structured illumination microscopy | Q24596247 | ||
| Evidence for channeled diffusion of pre-mRNAs during nuclear RNA transport in metazoans | Q24674018 | ||
| 4-D single particle tracking of synthetic and proteinaceous microspheres reveals preferential movement of nuclear particles along chromatin - poor tracks | Q24803784 | ||
| CTCF: an architectural protein bridging genome topology and function | Q26823453 | ||
| Geometry of the nucleus: a perspective on gene expression regulation | Q26996379 | ||
| Remodeling of the Nuclear Envelope and Lamina during Bovine Preimplantation Development and Its Functional Implications | Q27309013 | ||
| Comprehensive mapping of long-range interactions reveals folding principles of the human genome | Q28131819 | ||
| Capturing chromosome conformation | Q28201750 | ||
| Topological domains in mammalian genomes identified by analysis of chromatin interactions | Q28264221 | ||
| Single-cell Hi-C reveals cell-to-cell variability in chromosome structure | Q29397049 | ||
| Single-cell dynamics of genome-nuclear lamina interactions | Q39176932 | ||
| The potential of 3D-FISH and super-resolution structured illumination microscopy for studies of 3D nuclear architecture: 3D structured illumination microscopy of defined chromosomal structures visualized by 3D (immuno)-FISH opens new perspectives fo | Q39363850 | ||
| Revisiting point FRAP to quantitatively characterize anomalous diffusion in live cells. | Q39487482 | ||
| Quantitative motion analysis of subchromosomal foci in living cells using four-dimensional microscopy | Q40153765 | ||
| Visualization of specific DNA sequences in living mouse embryonic stem cells with a programmable fluorescent CRISPR/Cas system. | Q40457868 | ||
| The channels model of nuclear matrix structure. | Q40547920 | ||
| Nuclear lamins are not required for lamina-associated domain organization in mouse embryonic stem cells | Q40557089 | ||
| Cohesin-mediated interactions organize chromosomal domain architecture | Q41470387 | ||
| Spatial genome organization: contrasting views from chromosome conformation capture and fluorescence in situ hybridization | Q41684918 | ||
| Cell nucleus: chromosome dynamics in nuclei of living cells | Q41749550 | ||
| Multimodal nanoparticles as alignment and correlation markers in fluorescence/soft X-ray cryo-microscopy/tomography of nucleoplasmic reticulum and apoptosis in mammalian cells | Q41835548 | ||
| Structure-driven homology pairing of chromatin fibers: the role of electrostatics and protein-induced bridging. | Q41993462 | ||
| Molecular maps of the reorganization of genome-nuclear lamina interactions during differentiation | Q42472280 | ||
| Spatial dynamics of chromosome translocations in living cells. | Q42815190 | ||
| Species conserved DNA damage response at the inactive human X chromosome | Q42820318 | ||
| Micro-organization and visco-elasticity of the interphase nucleus revealed by particle nanotracking. | Q42829724 | ||
| Chromosomes and their relationship to nuclear components during the cell cycle in Chinese hamster cells | Q43496207 | ||
| Diffusion-limited compartmentalization of mammalian cell nuclei assessed by microinjected macromolecules | Q44590129 | ||
| Does the interchromatin compartment contain actin? | Q45802027 | ||
| Histone acetylation increases chromatin accessibility | Q46827175 | ||
| Better imaging through chemistry | Q48057083 | ||
| Focused ion beam (FIB) combined with high resolution scanning electron microscopy: a promising tool for 3D analysis of chromosome architecture | Q50455654 | ||
| LBR and lamin A/C sequentially tether peripheral heterochromatin and inversely regulate differentiation. | Q52633974 | ||
| Preparation and characterization of chick erythrocyte nuclei from heterokaryons. | Q54026114 | ||
| Dynamics of single mRNP nucleocytoplasmic transport and export through the nuclear pore in living cells. | Q54453207 | ||
| Characterization and localization of the RNA synthesized in mature avian erythrocytes | Q58439791 | ||
| Evolutionary origin of the cell nucleus and its functional architecture. | Q37785980 | ||
| Nuclear architecture by RNA. | Q37979013 | ||
| Fluorescence microscopy-a historical and technical perspective. | Q38098961 | ||
| From a melt of rings to chromosome territories: the role of topological constraints in genome folding. | Q38182801 | ||
| Transcription in the context of the 3D nucleus | Q38188767 | ||
| A requiem to the nuclear matrix: from a controversial concept to 3D organization of the nucleus | Q38198990 | ||
| Mechanisms and dynamics of nuclear lamina-genome interactions | Q38201574 | ||
| INO80 and SWR complexes: relating structure to function in chromatin remodeling | Q38236566 | ||
| Nuclear matrix and structural and functional compartmentalization of the eucaryotic cell nucleus | Q38238428 | ||
| Super-resolution imaging for cell biologists: concepts, applications, current challenges and developments | Q38315615 | ||
| The role of chromosome domains in shaping the functional genome. | Q38376756 | ||
| The viscoelastic properties of chromatin and the nucleoplasm revealed by scale-dependent protein mobility. | Q38922683 | ||
| Chromatin decondensation is sufficient to alter nuclear organization in embryonic stem cells. | Q38932033 | ||
| Microenvironment and effect of energy depletion in the nucleus analyzed by mobility of multiple oligomeric EGFPs | Q38978520 | ||
| Dynamic imaging of genomic loci in living human cells by an optimized CRISPR/Cas system | Q29615782 | ||
| A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping | Q29615814 | ||
| Retrotransposon Alu is enriched in the epichromatin of HL-60 cells | Q30413241 | ||
| Nuclear matrix. Isolation and characterization of a framework structure from rat liver nuclei | Q30424642 | ||
| Analysis of cryo-electron microscopy images does not support the existence of 30-nm chromatin fibers in mitotic chromosomes in situ | Q30485080 | ||
| High data output and automated 3D correlative light-electron microscopy method | Q30485811 | ||
| Targeting and tracing of specific DNA sequences with dTALEs in living cells. | Q30575324 | ||
| Three-dimensional super-resolution microscopy of the inactive X chromosome territory reveals a collapse of its active nuclear compartment harboring distinct Xist RNA foci | Q30584755 | ||
| Correlative microscopy methods that maximize specimen fidelity and data completeness, and improve molecular localization capabilities | Q30607510 | ||
| Live cell immunogold labelling of RNA polymerase II. | Q30619924 | ||
| Direct imaging of DNA in living cells reveals the dynamics of chromosome formation | Q31232677 | ||
| Spatial and temporal dynamics of DNA replication sites in mammalian cells | Q31955494 | ||
| High-precision structural analysis of subnuclear complexes in fixed and live cells via spatially modulated illumination (SMI) microscopy | Q33332209 | ||
| In vivo chromatin organization of mouse rod photoreceptors correlates with histone modifications | Q33603017 | ||
| Stable C0T-1 repeat RNA is abundant and is associated with euchromatic interphase chromosomes | Q33620505 | ||
| HSP70 transgene directed motion to nuclear speckles facilitates heat shock activation | Q33648700 | ||
| Chromatin as dynamic 10-nm fibers | Q33651467 | ||
| Chromosome territories | Q33693822 | ||
| TET enzymes, TDG and the dynamics of DNA demethylation. | Q33715010 | ||
| Double-strand break-induced transcriptional silencing is associated with loss of tri-methylation at H3K4. | Q34045935 | ||
| Single molecule localization microscopy of the distribution of chromatin using Hoechst and DAPI fluorescent probes. | Q34122738 | ||
| Functional nuclear organization of transcription and DNA replication: a topographical marriage between chromatin domains and the interchromatin compartment. | Q34176028 | ||
| Chromosome order in HeLa cells changes during mitosis and early G1, but is stably maintained during subsequent interphase stages. | Q34179664 | ||
| Perspective: transposable elements, parasitic DNA, and genome evolution | Q34192362 | ||
| Gene gating: a hypothesis | Q34192811 | ||
| Fine structural organization of the interphase nucleus in some mammalian cells | Q34240227 | ||
| Condensed chromatin domains in the mammalian nucleus are accessible to large macromolecules | Q34250385 | ||
| Electron microscope tomography: transcription in three dimensions | Q34271343 | ||
| Intracellular electric field and pH optimize protein localization and movement. | Q34279738 | ||
| Depletion of the chromatin looping proteins CTCF and cohesin causes chromatin compaction: insight into chromatin folding by polymer modelling | Q34314868 | ||
| Exploring the three-dimensional organization of genomes: interpreting chromatin interaction data | Q34343663 | ||
| Recruitment kinetics of DNA repair proteins Mdc1 and Rad52 but not 53BP1 depend on damage complexity | Q34364324 | ||
| An archaeal origin of eukaryotes supports only two primary domains of life | Q34391778 | ||
| Topological organization of multichromosomal regions by the long intergenic noncoding RNA Firre | Q34400074 | ||
| Models of chromosome structure | Q34419157 | ||
| Chromatin domains and the interchromatin compartment form structurally defined and functionally interacting nuclear networks. | Q34582972 | ||
| Dynamic genome architecture in the nuclear space: regulation of gene expression in three dimensions | Q34603234 | ||
| Chromosomes without a 30-nm chromatin fiber | Q34640698 | ||
| Activation of DNA damage response signaling by condensed chromatin | Q34713712 | ||
| Origins of major archaeal clades correspond to gene acquisitions from bacteria | Q34848019 | ||
| Nuclear architecture of rod photoreceptor cells adapts to vision in mammalian evolution. | Q34976799 | ||
| Specificity, propagation, and memory of pericentric heterochromatin | Q34986658 | ||
| Revealing the high-resolution three-dimensional network of chromatin and interchromatin space: a novel electron-microscopic approach to reconstructing nuclear architecture | Q35001224 | ||
| Recollections of a scientific journey published in human genetics: from chromosome territories to interphase cytogenetics and comparative genome hybridization | Q35087959 | ||
| Distinct properties of human HMGN5 reveal a rapidly evolving but functionally conserved nucleosome binding protein. | Q35096592 | ||
| Multicolor CRISPR labeling of chromosomal loci in human cells. | Q35190002 | ||
| Retrieving the intracellular topology from multi-scale protein mobility mapping in living cells. | Q35212323 | ||
| Reprogramming of fibroblast nuclei in cloned bovine embryos involves major structural remodeling with both striking similarities and differences to nuclear phenotypes of in vitro fertilized embryos | Q35497293 | ||
| Predictive polymer modeling reveals coupled fluctuations in chromosome conformation and transcription | Q35592856 | ||
| Form follows function: The genomic organization of cellular differentiation | Q35806109 | ||
| "Nanosized voltmeter" enables cellular-wide electric field mapping | Q35906108 | ||
| Internal organisation of the nucleus: assembly of compartments by macromolecular crowding and the nuclear matrix model | Q35935638 | ||
| Eukaryogenesis, how special really? | Q35990022 | ||
| The International Nucleome Consortium | Q36189603 | ||
| Replicon clusters are stable units of chromosome structure: evidence that nuclear organization contributes to the efficient activation and propagation of S phase in human cells | Q36255115 | ||
| Complexity of chromatin folding is captured by the strings and binders switch model | Q36342953 | ||
| Evidence for a nuclear compartment of transcription and splicing located at chromosome domain boundaries | Q36745903 | ||
| Ultrastructural analysis of transcription and splicing in the cell nucleus after bromo-UTP microinjection | Q36837831 | ||
| Polymer models of chromatin organization | Q36941824 | ||
| Transcription forms and remodels supercoiling domains unfolding large-scale chromatin structures | Q36946305 | ||
| The hierarchy of the 3D genome | Q37090603 | ||
| Superresolution imaging of transcription units on newt lampbrush chromosomes | Q37144079 | ||
| Elucidating chromatin and nuclear domain architecture with electron spectroscopic imaging | Q37156597 | ||
| Radial chromatin positioning is shaped by local gene density, not by gene expression | Q37208453 | ||
| Open chromatin in pluripotency and reprogramming | Q37477736 | ||
| Higher order nuclear organization: three-dimensional distribution of small nuclear ribonucleoprotein particles | Q37660535 | ||
| Chromatin structure: does the 30-nm fibre exist in vivo? | Q37719900 | ||
| Genome-nuclear lamina interactions and gene regulation | Q37742889 | ||
| P433 | issue | 20 Pt A | |
| P407 | language of work or name | English | Q1860 |
| P304 | page(s) | 2931-2943 | |
| P577 | publication date | 2015-05-28 | |
| P1433 | published in | FEBS Letters | Q1388051 |
| P1476 | title | The 4D nucleome: Evidence for a dynamic nuclear landscape based on co-aligned active and inactive nuclear compartments | |
| P478 | volume | 589 |
| Q38910337 | 3D structures of individual mammalian genomes studied by single-cell Hi-C. |
| Q90707600 | 4D Genome Rewiring during Oncogene-Induced and Replicative Senescence |
| Q42081843 | A Pair of Maternal Chromosomes Derived from Meiotic Nondisjunction in Trisomy 21 Affects Nuclear Architecture and Transcriptional Regulation. |
| Q27337175 | A transient ischemic environment induces reversible compaction of chromatin |
| Q92480145 | Active topological glass |
| Q58726660 | Aqueous mounting media increasing tissue translucence improve image quality in Structured Illumination Microscopy of thick biological specimen |
| Q57834642 | Are There Knots in Chromosomes? |
| Q39108692 | Boundaries of loop domains (insulators): Determinants of chromosome form and function in multicellular eukaryotes |
| Q41137927 | Bridging the dynamics and organization of chromatin domains by mathematical modeling |
| Q60309397 | Chain organization of human interphase chromosome determines the spatiotemporal dynamics of chromatin loci |
| Q26799305 | Chromatin Dynamics in Vivo: A Game of Musical Chairs |
| Q41942102 | Chromatin organization revealed by nanostructure of irradiation induced γH2AX, 53BP1 and Rad51 foci |
| Q91140229 | Chromosome territories and the global regulation of the genome |
| Q36470519 | Chromosomes at Work: Organization of Chromosome Territories in the Interphase Nucleus. |
| Q33866989 | Chronic stress and intestinal barrier dysfunction: Glucocorticoid receptor and transcription repressor HES1 regulate tight junction protein Claudin-1 promoter |
| Q39383182 | Co-regulation of paralog genes in the three-dimensional chromatin architecture |
| Q103826058 | Cohesin depleted cells rebuild functional nuclear compartments after endomitosis |
| Q90640447 | DNA sequence-dependent chromatin architecture and nuclear hubs formation |
| Q47761435 | Density imaging of heterochromatin in live cells using orientation-independent-DIC microscopy |
| Q42082177 | Distinct and shared three-dimensional chromosome organization patterns in lymphocytes, monoclonal gammopathy of undetermined significance and multiple myeloma |
| Q37539725 | Dynamic properties of independent chromatin domains measured by correlation spectroscopy in living cells |
| Q55339096 | Enhancer functions in three dimensions: beyond the flat world perspective. |
| Q55420922 | Episomal HBV persistence within transcribed host nuclear chromatin compartments involves HBx. |
| Q51580120 | FGFR3 preferentially colocalizes with IGH in the interphase nucleus of multiple myeloma patient B-cells when FGFR3 is located outside of CT4. |
| Q53415760 | Formation of Chromatin Subcompartments by Phase Separation. |
| Q38969583 | Genomic Energy Landscapes |
| Q38674458 | Genomic properties of chromosomal bands are linked to evolutionary rearrangements and new centromere formation in primates |
| Q92087998 | Hi-D: nanoscale mapping of nuclear dynamics in single living cells |
| Q27318586 | High resolution imaging reveals heterogeneity in chromatin states between cells that is not inherited through cell division |
| Q93066437 | Histone Code and Higher-Order Chromatin Folding: A Hypothesis |
| Q36935016 | Human genome regulation |
| Q33635927 | Imaging chromatin nanostructure with binding-activated localization microscopy based on DNA structure fluctuations. |
| Q51710857 | In Vivo and In Situ Replication Labeling Methods for Super-resolution Structured Illumination Microscopy of Chromosome Territories and Chromatin Domains. |
| Q40485672 | Influenza A virus nucleoprotein targets subnuclear structures. |
| Q41291493 | Initial high-resolution microscopic mapping of active and inactive regulatory sequences proves non-random 3D arrangements in chromatin domain clusters |
| Q39185469 | Integration of mRNP formation and export |
| Q92092266 | Intermingling of chromosome territories |
| Q50053879 | Live Dynamics of 53BP1 Foci Following Simultaneous Induction of Clustered and Dispersed DNA Damage in U2OS Cells. |
| Q90215774 | Long-range interactions between topologically associating domains shape the four-dimensional genome during differentiation |
| Q38849276 | Mining the topography and dynamics of the 4D Nucleome to identify novel CNS drug pathways |
| Q26775145 | Minor Loops in Major Folds: Enhancer-Promoter Looping, Chromatin Restructuring, and Their Association with Transcriptional Regulation and Disease |
| Q92189811 | Nuclear Envelope Regulation of Oncogenic Processes: Roles in Pancreatic Cancer |
| Q90297937 | Nuclear compartmentalization, dynamics, and function of regulatory DNA sequences |
| Q91136869 | Nuclear cytometry and chromatin organization |
| Q88667939 | Nuclear organization mediates cancer-compromised genetic and epigenetic control |
| Q33757972 | Nucleolus association of chromosomal domains is largely maintained in cellular senescence despite massive nuclear reorganisation. |
| Q48144118 | Nucleoporins redistribute inside the nucleus after cell cycle arrest induced by histone deacetylases inhibition |
| Q64115304 | Phasor histone FLIM-FRET microscopy quantifies spatiotemporal rearrangement of chromatin architecture during the DNA damage response |
| Q92718080 | Physical and data structure of 3D genome |
| Q61800367 | Physical principles of retroviral integration in the human genome |
| Q92631980 | Predicting three-dimensional genome organization with chromatin states |
| Q50957211 | Promoter interactions direct chromatin folding in embryonic stem cells. |
| Q28364885 | Quantitative Immunofluorescence Analysis of Nucleolus-Associated Chromatin |
| Q38890953 | Quantitative analyses of the 3D nuclear landscape recorded with super-resolved fluorescence microscopy |
| Q36713926 | Quantitative super-resolution localization microscopy of DNA in situ using Vybrant® DyeCycle™ Violet fluorescent probe |
| Q64058702 | RAG2 localization and dynamics in the pre-B cell nucleus |
| Q47419207 | Real-time observation of light-controlled transcription in living cells. |
| Q27327205 | Remodeling of nuclear landscapes during human myelopoietic cell differentiation maintains co-aligned active and inactive nuclear compartments |
| Q92442397 | Resolution of Complex Issues in Genome Regulation and Cancer Requires Non-Linear and Network-Based Thermodynamics |
| Q31157515 | Retrieving Chromatin Patterns from Deep Sequencing Data Using Correlation Functions. |
| Q92101471 | Sample drift estimation method based on speckle patterns formed by backscattered laser light |
| Q42048322 | Single Molecule Localization Microscopy of Mammalian Cell Nuclei on the Nanoscale |
| Q53803465 | Small Activity Differences Drive Phase Separation in Active-Passive Polymer Mixtures. |
| Q45054543 | Small chromosomal regions position themselves autonomously according to their chromatin class. |
| Q59136476 | Sorting mRNA Molecules for Cytoplasmic Transport and Localization |
| Q47753801 | Super-Resolution Binding Activated Localization Microscopy through reversible change of DNA conformation |
| Q50016606 | Super-Resolution Microscopy in Studying the Structure and Function of the Cell Nucleus |
| Q100506990 | Super-resolution Microscopy with Single Molecules in Biology and Beyond-Essentials, Current Trends, and Future Challenges |
| Q36341055 | Super-resolution microscopy approaches to nuclear nanostructure imaging |
| Q33835720 | Super-resolution structure of DNA significantly differs in buccal cells of controls and Alzheimer's patients |
| Q36331934 | Superresolution imaging reveals structurally distinct periodic patterns of chromatin along pachytene chromosomes |
| Q38774302 | Targeted Degradation of CTCF Decouples Local Insulation of Chromosome Domains from Genomic Compartmentalization. |
| Q51132821 | Tethering RNA to chromatin for fluorescence microscopy based analysis of nuclear organization. |
| Q39244160 | The Molecular Revolution in Cutaneous Biology: Chromosomal Territories, Higher-Order Chromatin Remodeling, and the Control of Gene Expression in Keratinocytes |
| Q39289403 | The X chromosome in space |
| Q50199930 | The pharmacoepigenomics informatics pipeline defines a pathway of novel and known warfarin pharmacogenomics variants |
| Q38680093 | The redundancy of the mammalian heterochromatic compartment |
| Q93087894 | Three-Dimensional Segmentation and Reconstruction of Neuronal Nuclei in Confocal Microscopic Images |
| Q52345221 | Three-dimensional organization and dynamics of the genome. |
| Q39042849 | Transcriptional architecture of the mammalian circadian clock |
| Q26766143 | Understanding Spatial Genome Organization: Methods and Insights |
| Q89499360 | Understanding the 3D genome: Emerging impacts on human disease |
| Q39718691 | Unraveling the mechanisms of chromatin fibril packaging |
| Q49572829 | Using DNase Hi-C techniques to map global and local three-dimensional genome architecture at high resolution |
| Q91560411 | WNT signaling and AHCTF1 promote oncogenic MYC expression through super-enhancer-mediated gene gating |
| Q91142810 | Xist RNA antagonizes the SWI/SNF chromatin remodeler BRG1 on the inactive X chromosome |
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