Identifying repeat domains in large genomes

scientific article

Identifying repeat domains in large genomes is …
instance of (P31):
scholarly articleQ13442814

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P6179Dimensions Publication ID1038067126
P356DOI10.1186/GB-2006-7-1-R7
P932PMC publication ID1431705
P698PubMed publication ID16507140
P5875ResearchGate publication ID7270903

P50authorPavel A. PevznerQ4262009
Benjamin J. RaphaelQ60057039
Alkes PriceQ32652800
P2093author name stringDegui Zhi
Haixu Tang
P2860cites workHuman-specific duplication and mosaic transcripts: the recent paralogous structure of chromosome 22.Q34353007
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De novo repeat classification and fragment assemblyQ37496360
Genome-wide comparative analysis of the transposable elements in the related species Arabidopsis thaliana and Brassica oleraceaQ37682144
A novel method for multiple alignment of sequences with repeated and shuffled elementsQ40299811
LINEs mobilize SINEs in the eel through a shared 3' sequence.Q42687400
Repeats in genomic DNA: mining and meaningQ47755769
The genome sequence of Caenorhabditis briggsae: a platform for comparative genomicsQ21092840
Initial sequence of the chimpanzee genome and comparison with the human genomeQ22122468
Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolutionQ22122484
CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choiceQ24286950
BLAT—The BLAST-Like Alignment ToolQ24682492
A clustering method for repeat analysis in DNA sequencesQ24803684
A comprehensive evolutionary classification of proteins encoded in complete eukaryotic genomesQ24807153
Whole-genome analysis of Alu repeat elements reveals complex evolutionary historyQ28770097
Aligning multiple genomic sequences with the threaded blockset alignerQ29547490
Mobile elements: drivers of genome evolutionQ29547669
Repbase update: a database and an electronic journal of repetitive elementsQ29614368
Multiple sequence alignment using partial order graphsQ29614437
De novo identification of repeat families in large genomesQ29617348
Automated de novo identification of repeat sequence families in sequenced genomesQ29617349
Alu repeats and human genomic diversityQ29618341
Transposable elements as the key to a 21st century view of evolution.Q30327118
PILER: identification and classification of genomic repeatsQ33217292
An Alu Transposition Model for the Origin and Expansion of Human Segmental DuplicationsQ33906041
Stress and transposable elements: co-evolution or useful parasites?Q34049943
Perspective: transposable elements, parasitic DNA, and genome evolutionQ34192362
P433issue1
P304page(s)R7
P577publication date2006-01-31
P1433published inGenome BiologyQ5533480
P1476titleIdentifying repeat domains in large genomes
P478volume7

Reverse relations

cites work (P2860)
Q42553488AliWABA: alignment on the web through an A-Bruijn approach
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Q57057004Decoding Synteny Blocks and Large-Scale Duplications in Mammalian and Plant Genomes
Q24646360Empirical comparison of ab initio repeat finding programs
Q28595711Extensive sequence divergence between the reference genomes of two elite indica rice varieties Zhenshan 97 and Minghui 63
Q37223492Genomic and transcriptomic analyses of the tangerine pathotype of Alternaria alternata in response to oxidative stress
Q28277980Identification of homologous microRNAs in 56 animal genomes
Q33265237Novel porcine repetitive elements
Q35103302Recurrent evolution of melanism in South American felids.
Q37318588Review of general algorithmic features for genome assemblers for next generation sequencers
Q41829985Short read fragment assembly of bacterial genomes
Q31153099Simple tools for assembling and searching high-density picolitre pyrophosphate sequence data
Q24656355UCbase & miRfunc: a database of ultraconserved sequences and microRNA function
Q36053761phRAIDER: Pattern-Hunter based Rapid Ab Initio Detection of Elementary Repeats

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