Genetics: Junk DNA as an evolutionary force

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Genetics: Junk DNA as an evolutionary force is …
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scholarly articleQ13442814

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P6179Dimensions Publication ID1047501730
P356DOI10.1038/443521A
P3181OpenCitations bibliographic resource ID3268107
P698PubMed publication ID17024082
P5875ResearchGate publication ID6771158

P50authorCristina VieiraQ54214910
P2093author name stringChristian Biémont
P2860cites workRepetitive elements in imprinted genes.Q36436539
Extinction of LINE-1 activity coincident with a major mammalian radiation in rodentsQ46644649
Ongoing loss of the tirant transposable element in natural populations of Drosophila simulans.Q47210559
Retrotransposons regulate host genes in mouse oocytes and preimplantation embryos.Q48810940
Establishment of the vernalization-responsive, winter-annual habit in Arabidopsis requires a putative histone H3 methyl transferase.Q50771635
PERSPECTIVE: TRANSPOSABLE ELEMENTS, PARASITIC DNA, AND GENOME EVOLUTIONQ56267651
Mobile elements and diseaseQ74837228
Epigenetic differences arise during the lifetime of monozygotic twinsQ24531005
Direct Involvement of HERV-W Env Glycoprotein in Human Trophoblast Cell Fusion and DifferentiationQ24669650
Argonaute protein PIWI controls mobilization of retrotransposons in the Drosophila male germlineQ24791717
Variation in tissue-specific gene expression among natural populationsQ24796309
Meiotically stable natural epialleles of Sadhu, a novel Arabidopsis retroposonQ25257720
Transposable elements as a source of genetic innovation: expression and evolution of a family of retrotransposon-derived neogenes in mammalsQ28235412
Gene therapy. Putting the fingers on gene repairQ28288399
Functional noncoding sequences derived from SINEs in the mammalian genomeQ28768519
The origins of genome complexityQ29547507
Role of transposable elements in heterochromatin and epigenetic controlQ29616253
Epigenetic inheritance at the agouti locus in the mouseQ29617318
The epigenetic progenitor origin of human cancerQ29617486
Somatic mosaicism in neuronal precursor cells mediated by L1 retrotranspositionQ29618826
Organization and variability of the maize genomeQ33233123
Perspective: transposable elements, parasitic DNA, and genome evolutionQ34192362
Impact of transposable elements on the evolution of mammalian gene regulationQ34442055
RNAi: a defensive RNA-silencing against viruses and transposable elements.Q34478583
Human endogenous retroviral elements as indicators of ectopic recombination events in the primate genomeQ34589874
The contributions of normal variation and genetic background to mammalian gene expressionQ35012903
Early nutrition, epigenetic changes at transposons and imprinted genes, and enhanced susceptibility to adult chronic diseasesQ35617527
Epigenomic mapping in Arabidopsis using tiling microarraysQ36114732
What transposable elements tell us about genome organization and evolution: the case of DrosophilaQ36225259
Host defenses to transposable elements and the evolution of genomic imprintingQ36225308
Classification and nomenclature of retrotransposable elementsQ36225373
P433issue7111
P407language of work or nameEnglishQ1860
P304page(s)521-524
P577publication date2006-10-05
P1433published inNatureQ180445
P1476titleGenetics: Junk DNA as an evolutionary force
P478volume443

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cites work (P2860)
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Q90943033Hybrid Genome Evolution by Transposition: An Update
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Q34364963Identification and characterization of argonaute protein, Ago2 and its associated small RNAs in Schistosoma japonicum
Q114062753Identification and characterization of transposable element AhMITE1 in the genomes of cultivated and two wild peanuts
Q57691741Identification and characterization of transposable elements inserted into the coding sequences of horse genes
Q57024747Identification and functional characterization of intermediate-size non-coding RNAs in maize
Q51400446Identification of Mouse piRNA Pathway Components Using Anti-MIWI2 Antibodies.
Q33424178Identification of expressed transposable element insertions in the sequenced genome of Drosophila melanogaster
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Q34662902Integrated "omics" profiling indicates that miRNAs are modulators of the ontogenetic venom composition shift in the Central American rattlesnake, Crotalus simus simus
Q33526699Jumping genes and epigenetics: Towards new species
Q56772979Junk DNA promotes sex chromosome evolution
Q91931363Karyological characterization of the common chameleon (Chamaeleo chamaeleon) provides insights on the evolution and diversification of sex chromosomes in Chamaeleonidae
Q41866785Karyotype and cytogenetic mapping of 9 classes of repetitive DNAs in the genome of the naked catfish Mystus bocourti (Siluriformes, Bagridae).
Q38917753Karyotypic Evolution and Chromosomal Organization of Repetitive DNA Sequences in Species of Panaque, Panaqolus, and Scobinancistrus (Siluriformes and Loricariidae) from the Amazon Basin
Q57671643LTR-retrotransposons Tnt1 and T135 markers reveal genetic diversity and evolutionary relationships of domesticated peppers
Q34613169LTR-retrotransposons in R. exoculata and other crustaceans: the outstanding success of GalEa-like copia elements
Q50650910Lager yeasts possess dynamic genomes that undergo rearrangements and gene amplification in response to stress.
Q28748567Large-scale discovery of insertion hotspots and preferential integration sites of human transposed elements
Q50531061Long-culm mutations with dominant genes are induced by mPing transposon in rice.
Q33326336Losing helena: the extinction of a drosophila line-like element.
Q34251612MASiVEdb: the Sirevirus Plant Retrotransposon Database
Q53592911MDTE DB: a database for microRNAs derived from Transposable element.
Q36000665Male germline control of transposable elements
Q35629302Massive amplification of rolling-circle transposons in the lineage of the bat Myotis lucifugus
Q36812578Maternally deposited germline piRNAs silence the tirant retrotransposon in somatic cells.
Q28754924Members of a large retroposon family are determinants of post-transcriptional gene expression in Leishmania
Q43248470Methods for detection of horizontal transfer of transposable elements in complete genomes
Q38602036Methylation of subtelomeric repeat D4Z4 in peripheral blood leukocytes is associated with biochemical recurrence in localized prostate cancer patients.
Q33855406MicroRNA genes derived from repetitive elements and expanded by segmental duplication events in mammalian genomes
Q35565375Microbial Consortium Associated with the Antarctic Marine Ciliate Euplotes focardii: An Investigation from Genomic Sequences
Q33679520Microsatellite organization in the grasshopper Abracris flavolineata (Orthoptera: Acrididae) revealed by FISH mapping: remarkable spreading in the A and B chromosomes
Q112281906Migrators within migrators: exploring transposable element dynamics in the monarch butterfly, Danaus plexippus
Q21198751Mobile DNA and the TE-Thrust hypothesis: supporting evidence from the primates
Q55259205Mobilization of retrotransposons as a cause of chromosomal diversification and rapid speciation: the case for the Antarctic teleost genus Trematomus.
Q27657473Molecular Architecture of the Mos1 Paired-End Complex: The Structural Basis of DNA Transposition in a Eukaryote
Q37638207Molecular and cellular mechanisms of diversity within grapevine varieties
Q48923220Molecular characterization of alternative transcripts of the horse BMAL1 gene
Q46253314Molecular characterization of repetitive DNA sequences from B chromosome in Plantago lagopus L.
Q33529186Molecular characterization of the Sasanda LTR copia retrotransposon family uncovers their recent amplification in Triticum aestivum (L.) genome
Q85651387Molecular cytogenetic analysis of the Appenine endemic cyprinid fish Squalius lucumonis and three other Italian leuciscines using chromosome banding and FISH with rDNA probes
Q88523705Molecular dissection of a natural transposable element invasion
Q103744285Mosquito genomes are frequently invaded by transposable elements through horizontal transfer
Q64271996Multi-level remodeling of transcriptional landscapes in aging and longevity
Q28608099Multilevel Selection Theory and the Evolutionary Functions of Transposable Elements
Q28602246Murine endogenous retroviruses
Q38417739Nanger, Eudorcas, Gazella, and Antilope form a well-supported chromosomal clade within Antilopini (Bovidae, Cetartiodactyla).
Q38628140Nomadic genetic elements contribute to oncogenic translocations: Implications in carcinogenesis
Q34742717Non-coding RNAs, epigenetics and complexity
Q36709421Non-genomic transgenerational inheritance of disease risk
Q38743334Not so bad after all: retroviruses and long terminal repeat retrotransposons as a source of new genes in vertebrates.
Q99204248ONSEN shows different transposition activities in RdDM pathway mutants
Q92758515On the Importance to Acknowledge Transposable Elements in Epigenomic Analyses
Q44120975On the fractal geometry of DNA by the binary image analysis
Q33879905Osvaldo and Isis retrotransposons as markers of the Drosophila buzzatii colonisation in Australia
Q60462221P element temperature-specific transposition: a model for possible regulation of mobile elements activity by pre-mRNA secondary structure
Q60437183People, Plants and Genes
Q50259864Phenocopies in families with essential tremor and restless legs syndrome challenge Mendelian laws. Epigenetics might provide answers
Q38746884PlanTEnrichment: A tool for enrichment analysis of transposable elements in plants
Q33618933Population dynamics of PIWI-interacting RNAs (piRNAs) and their targets in Drosophila
Q34823735Population genomics of transposable elements in Drosophila melanogaster.
Q91092373Population-Based Cytogenetic Banding Analysis and Phylogenetic Relationships of the Neotropical Fungus-Farming Ant Trachymyrmex holmgreni Wheeler, 1925
Q107473590Potential APOBEC-mediated RNA editing of the genomes of SARS-CoV-2 and other coronaviruses and its impact on their longer term evolution
Q28831298Profuse evolutionary diversification and speciation on volcanic islands: transposon instability and amplification bursts explain the genetic paradox
Q28752168Proliferation of Ty3/gypsy-like retrotransposons in hybrid sunflower taxa inferred from phylogenetic data
Q38847714Prospective changes in global DNA methylation and cancer incidence and mortality
Q42356903RGG boxes within the TET/FET family of RNA-binding proteins are functionally distinct
Q35001347RIP-seq of BmAgo2-associated small RNAs reveal various types of small non-coding RNAs in the silkworm, Bombyx mori
Q52692430RNA interference: endogenous siRNAs derived from transposable elements.
Q102202028Reconstructing the Invasion Route of the P-Element in Drosophila melanogaster Using Extant Population Samples
Q47655033Refunctionalization of the ancient rice blast disease resistance gene Pit by the recruitment of a retrotransposon as a promoter
Q51738526Repetitive DNAs and shrink genomes: A chromosomal analysis in nine Columbidae species (Aves, Columbiformes).
Q59048396Repetitive Sequence and Sex Chromosome Evolution in Vertebrates
Q37119615Repetitive element hypomethylation in blood leukocyte DNA and cancer incidence, prevalence, and mortality in elderly individuals: the Normative Aging Study
Q38292161Repetitive flanking sequences challenge microsatellite marker development: a case study in the lepidopteran Melanargia galathea.
Q36824098Repetitive sequences in complex genomes: structure and evolution
Q28603332Repetitive sequences: the hidden diversity of heterochromatin in prochilodontid fish
Q38937848Resolving fine-grained dynamics of retrotransposons: comparative analysis of inferential methods and genomic resources.
Q38107069Retroelements: molecular features and implications for disease
Q34042729Retrotransposon-induced heterochromatin spreading in the mouse revealed by insertional polymorphisms
Q48511811Retrotransposons Mimic Germ Plasm Determinants to Promote Transgenerational Inheritance
Q34733310Role of retrotransposon-derived imprinted gene, Rtl1, in the feto-maternal interface of mouse placenta
Q37158157Role of transposable elements in trypanosomatids.
Q54966562SPTEdb: a database for transposable elements in salicaceous plants.
Q33294061SREBP controls oxygen-dependent mobilization of retrotransposons in fission yeast
Q99560075Scanning window analysis of non-coding regions within normal-tumor whole-genome sequence samples
Q28742794Selfish genetic elements, genetic conflict, and evolutionary innovation
Q91175955Sex and the TEs: transposable elements in sexual development and function in animals
Q36780677Shifts in rDNA levels act as a genome buffer promoting chromosome homeostasis.
Q39365428Silencing of Transposable Elements by piRNAs in Drosophila: An Evolutionary Perspective
Q34057463Single-stranded DNA transposition is coupled to host replication.
Q33754789Small RNA Pathways That Protect the Somatic Genome
Q37809240Small RNA-Mediated Quiescence of Transposable Elements in Animals
Q36392406Somatizing the transposons action
Q34524725Spreading of heterochromatin is limited to specific families of maize retrotransposons
Q92417539Stable Genome Incorporation of Sperm-derived DNA Fragments in Gynogenetic Clone of Gibel Carp
Q41032931Strong phylogenetic inertia on genome size and transposable element content among 26 species of flies
Q80706518Structure of two melon regions reveals high microsynteny with sequenced plant species
Q100418393Structures of ISCth4 transpososomes reveal the role of asymmetry in copy-out/paste-in DNA transposition
Q46678687Synthetic biology and its alternatives. Descartes, Kant and the idea of engineering biological machines
Q28741643T-lex: a program for fast and accurate assessment of transposable element presence using next-generation sequencing data
Q91871010TEffectR: an R package for studying the potential effects of transposable elements on gene expression with linear regression model
Q45854044TEtools facilitates big data expression analysis of transposable elements and reveals an antagonism between their activity and that of piRNA genes
Q33522038The B chromosomes of the African cichlid fish Haplochromis obliquidens harbour 18S rRNA gene copies
Q28072240The Eukaryotic Microbiome: Origins and Implications for Fetal and Neonatal Life
Q64244904The Modern View of B Chromosomes Under the Impact of High Scale Omics Analyses
Q33427466The R2 mobile element of Rhynchosciara americana: molecular, cytological and dynamic aspects
Q35675864The Role of Transposable Elements in the Origin and Evolution of MicroRNAs in Human
Q35768978The Role of Vertical and Horizontal Transfer in the Evolutionary Dynamics of PIF-Like Transposable Elements in Triticeae
Q37442744The adaptive role of transposable elements in the Drosophila genome
Q36752676The choice of model organisms in evo-devo
Q52718108The copia retrotransposon and horizontal transfer in Drosophila willistoni.
Q36052156The dynamics of the roo transposable element in mutation-accumulation lines and segregating populations of Drosophila melanogaster.
Q58556212The element invaded rapidly and caused hybrid dysgenesis in natural populations of in Japan
Q38107068The epigenetic regulation of transposable elements by PIWI-interacting RNAs in Drosophila
Q33485535The evolutionary dynamics of the Helena retrotransposon revealed by sequenced Drosophila genomes
Q40144782The genetic architecture of a complex trait: Resistance to multiple toxins produced by Bacillus thuringiensis israelensis in the dengue and yellow fever vector, the mosquito Aedes aegypti
Q37122042The genome of Anopheles darlingi, the main neotropical malaria vector
Q38007538The genomics of obligate (and nonobligate) biotrophs
Q52688669The heterochromatic copies of the LTR retrotransposons as a record of the genomic events that have shaped the Drosophila melanogaster genome.
Q47444927The hobo transposon and hobo-related elements are expressed as developmental genes in Drosophila
Q38072072The impact of transposable elements in environmental adaptation.
Q34295846The impact of transposable elements on eukaryotic genomes: from genome size increase to genetic adaptation to stressful environments
Q36292855The key role of repeated DNAs in sex chromosome evolution in two fish species with ZW sex chromosome system
Q45050393The non-LTR retrotransposon R2 in termites (Insecta, Isoptera): characterization and dynamics
Q37392943The problem of the eukaryotic genome size
Q35900342The repatterning of eukaryotic genomes by random genetic drift
Q36879772The role of IS6110 in the evolution of Mycobacterium tuberculosis
Q37412262The role of repetitive DNA in structure and evolution of sex chromosomes in plants.
Q34024461The role of transposable elements in the evolution of non-mammalian vertebrates and invertebrates
Q52736667The role of vertical and horizontal transfer in the evolution of Paris-like elements in drosophilid species.
Q38603473The satellite DNA AflaSAT-1 in the A and B chromosomes of the grasshopper Abracris flavolineata.
Q36099524The transposable element environment of human genes is associated with histone and expression changes in cancer
Q28757667Thousands of human mobile element fragments undergo strong purifying selection near developmental genes
Q41248310Transcriptional activity of PIF and Pong-like Class II transposable elements in Triticeae
Q34077647Transcriptome of small regulatory RNAs in the development of the zoonotic parasite Trichinella spiralis
Q24649774TranspoGene and microTranspoGene: transposed elements influence on the transcriptome of seven vertebrates and invertebrates
Q28657610Transposable element evolution in Heliconius suggests genome diversity within Lepidoptera
Q38330784Transposable element-driven transcript diversification and its relevance to genetic disorders
Q38592333Transposable elements and G-quadruplexes.
Q34299920Transposable elements and human cancer: a causal relationship?
Q38043677Transposable elements and insecticide resistance.
Q38116552Transposable elements and microevolutionary changes in natural populations
Q52680258Transposable elements and the multidimensional genome.
Q28710587Transposable elements and viruses as factors in adaptation and evolution: an expansion and strengthening of the TE-Thrust hypothesis
Q33320829Transposable elements as drivers of genomic and biological diversity in vertebrates
Q37988429Transposable elements as tools for reshaping the genome: it is a huge world after all!
Q38041873Transposable elements domesticated and neofunctionalized by eukaryotic genomes
Q80579720Transposable elements in Coffea (Gentianales: Rubiacea) transcripts and their role in the origin of protein diversity in flowering plants
Q84708077Transposable elements in disease-associated cryptic exons
Q37705712Transposable elements in reptilian and avian (sauropsida) genomes
Q96302272Transposable elements, circular RNAs and mitochondrial transcription in age-related genomic regulation
Q34294946Transposable elements: an abundant and natural source of regulatory sequences for host genes.
Q28661923Transposable elements: powerful contributors to angiosperm evolution and diversity
Q37470360Transposable elements: powerful facilitators of evolution
Q42861523Transposase-derived transcription factors regulate light signaling in Arabidopsis
Q111921288TransposonUltimate: software for transposon classification, annotation and detection
Q114185325Transposons and non-coding regions drive the intrafamily differences of genome size in insects
Q61963492Transposons in Cereals: Shaping Genomes and Driving Their Evolution
Q30497681Universal platform for quantitative analysis of DNA transposition.
Q39487484Unraveling the evolutionary scenario of the hobo element in populations of Drosophila melanogaster and D. simulans in South America using the TPE repeats as markers
Q36014539What Can Domesticated Genes Tell Us about the Intron Gain in Mammals?
Q28681408What contemporary viruses tell us about evolution: a personal view
Q36064318What's in a genome? The C-value enigma and the evolution of eukaryotic genome content
Q60168103Wheat and Barley Genome Sequencing
Q34162471Whole genome resequencing reveals natural target site preferences of transposable elements in Drosophila melanogaster
Q60922627Widespread roles of enhancer-like transposable elements in cell identity and long-range genomic interactions
Q41203684Zn2+ blocks annealing of complementary single-stranded DNA in a sequence-selective manner
Q51833257[Embryonic development is controlled by small non-coding RNAs derived from transposable elements].
Q84196270[Recent progress in plant genome size evolution]
Q83148256[Retroposons in modern human genome evolution]
Q46856169eQTL mapping of transposon silencing reveals a position-dependent stable escape from epigenetic silencing and transposition of AtMu1 in the Arabidopsis lineage
Q52701237hAT transposable elements and their derivatives: an analysis in the 12 Drosophila genomes.
Q36285389piRNA-mediated transgenerational inheritance of an acquired trait
Q46775222“One code to find them all”: a perl tool to conveniently parse RepeatMasker output files

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