Transposable elements and microevolutionary changes in natural populations

scientific article published on 25 June 2013

Transposable elements and microevolutionary changes in natural populations is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1111/1755-0998.12133
P698PubMed publication ID23795753
P5875ResearchGate publication ID241695862

P50authorChristian ParisodQ46300586
Georgi BonchevQ53214988
P2860cites workDoubling genome size without polyploidization: dynamics of retrotransposition-driven genomic expansions in Oryza australiensis, a wild relative of riceQ22065740
Is junk DNA bunk? A critique of ENCODEQ22066273
The Arabidopsis lyrata genome sequence and the basis of rapid genome size changeQ22122056
Genetics: Junk DNA as an evolutionary forceQ22122336
Selfish DNA: the ultimate parasiteQ22122417
Selfish genes, the phenotype paradigm and genome evolutionQ22122418
The Gypsy Database (GyDB) of mobile genetic elements: release 2.0Q24615158
Retrotransposons control fruit-specific, cold-dependent accumulation of anthocyanins in blood orangesQ24633395
Conserved noncoding genomic sequences associated with a flowering-time quantitative trait locus in maizeQ24675282
Repetitive elements may comprise over two-thirds of the human genomeQ28254709
SINEBase: a database and tool for SINE analysisQ28710200
Mobile DNA and evolution in the 21st centuryQ28748605
Transposable elements and the evolution of regulatory networksQ28756349
The significance of responses of the genome to challengeQ28913697
Repbase Update, a database of eukaryotic repetitive elementsQ29547460
A unified classification system for eukaryotic transposable elementsQ29617222
Transposable elements and the epigenetic regulation of the genomeQ29617224
Origin of a substantial fraction of human regulatory sequences from transposable elementsQ29617225
Epigenetic inheritance at the agouti locus in the mouseQ29617318
Somatic retrotransposition alters the genetic landscape of the human brainQ29622895
Graph-based clustering and characterization of repetitive sequences in next-generation sequencing data.Q30495793
Rapid isolation of plant Ty1-copia group retrotransposon LTR sequences for molecular marker studiesQ30817301
Exceptional diversity, non-random distribution, and rapid evolution of retroelements in the B73 maize genomeQ30912427
Statistical analysis of amplified fragment length polymorphism data: a toolbox for molecular ecologists and evolutionists.Q31127277
Discovery and assembly of repeat family pseudomolecules from sparse genomic sequence data using the Assisted Automated Assembler of Repeat Families (AAARF) algorithmQ31155225
Sequence composition, organization, and evolution of the core Triticeae genomeQ33208142
Analysis and mapping of randomly chosen bacterial artificial chromosome clones from hexaploid bread wheatQ33229594
High biological species diversity in the arctic floraQ33231821
Retroelement insertional polymorphisms, diversity and phylogeography within diploid, D-genome Aegilops tauschii (Triticeae, Poaceae) sub-taxa in IranQ33328156
Sequence differentiation in regions identified by a genome scan for local adaptationQ33338607
Darwinian evolution in the light of genomicsQ33408694
Mobilization of retrotransposons in synthetic allotetraploid tobacco.Q33523865
Genome-wide patterns of adaptation to temperate environments associated with transposable elements in DrosophilaQ33553464
Mobile element scanning (ME-Scan) by targeted high-throughput sequencingQ33622007
Evolutionary dynamics of retrotransposons assessed by high-throughput sequencing in wild relatives of wheatQ33924878
The role of transposable elements in the evolution of non-mammalian vertebrates and invertebratesQ34024461
Stress and transposable elements: co-evolution or useful parasites?Q34049943
It takes two transposons to tango: transposable-element-mediated chromosomal rearrangementsQ34069643
Mobilizing diversity: transposable element insertions in genetic variation and diseaseQ34138842
Sequencing of pooled DNA samples (Pool-Seq) uncovers complex dynamics of transposable element insertions in Drosophila melanogasterQ34145763
Transposable elements and their identificationQ34191005
Perspective: transposable elements, parasitic DNA, and genome evolutionQ34192362
RNA interference in the nucleus: roles for small RNAs in transcription, epigenetics and beyondQ34385616
Transposable elements and small RNAs contribute to gene expression divergence between Arabidopsis thaliana and Arabidopsis lyrataQ34573233
Transposon variants and their effects on gene expression in ArabidopsisQ34585732
Dissecting the insecticide-resistance- associated cytochrome P450 gene Cyp6g1.Q34761414
Remarkable variation in maize genome structure inferred from haplotype diversity at the bz locusQ35214968
Analysis of plant diversity with retrotransposon-based molecular markers.Q35247058
Genome evolution of wild barley (Hordeum spontaneum) by BARE-1 retrotransposon dynamics in response to sharp microclimatic divergence.Q35789298
Distribution and characterization of regulatory elements in the human genomeQ35807015
Centromere-targeted de novo integrations of an LTR retrotransposon of Arabidopsis lyrataQ35882154
Deficiency in DNA methylation increases meiotic crossover rates in euchromatic but not in heterochromatic regions in ArabidopsisQ35924788
Genome evolution mediated by Ty elements in SaccharomycesQ36225272
LTR retrotransposons and flowering plant genome size: emergence of the increase/decrease modelQ36225278
Stress activation and genomic impact of Tnt1 retrotransposons in SolanaceaeQ36225302
Long-term evolution of transposable elementsQ36288596
Repetitive DNA elements as mediators of genomic change in response to environmental cuesQ36558780
Identification of a functional transposon insertion in the maize domestication gene tb1.Q36940067
Haplotype structure strongly affects recombination in a maize genetic interval polymorphic for Helitron and retrotransposon insertionsQ37208849
Mobile element biology: new possibilities with high-throughput sequencingQ37609516
siRNAs targeting an intronic transposon in the regulation of natural flowering behavior in ArabidopsisQ37694336
A triptych of the evolution of plant transposable elementsQ37764521
How important are transposons for plant evolution?Q38068090
Hybridization and speciationQ38074482
The dynamics of LTR retrotransposon accumulation across 25 million years of panicoid grass evolutionQ39484991
Identifying insecticide resistance genes in mosquito by combining AFLP genome scans and 454 pyrosequencingQ39650626
Naturally occurring transposable elements disrupt hsp70 promoter function in Drosophila melanogasterQ40485701
Ty1-copia group retrotransposons are ubiquitous and heterogeneous in higher plantsQ40533091
The effects of recombination rate on the distribution and abundance of transposable elementsQ42045483
Independent origins of self-compatibility in Arabidopsis thalianaQ46259946
A whole-genome snapshot of 454 sequences exposes the composition of the barley genome and provides evidence for parallel evolution of genome size in wheat and barleyQ47183283
Polymorphism of a new Ty1-copia retrotransposon in durum wheat under salt and light stresses.Q48065617
The diversity of retroelements in diploid and allotetraploid Brassica species.Q48158156
Rapid structural and epigenetic reorganization near transposable elements in hybrid and allopolyploid genomes in Spartina.Q51180823
Modification of heat-shock gene expression in Drosophila melanogaster populations via transposable elements.Q52548865
Comparing three different methods to detect selective loci using dominant markersQ57912694
P433issue5
P921main subjectmicroevolutionQ680054
P304page(s)765-775
P577publication date2013-06-25
P1433published inMolecular Ecology ResourcesQ15760135
P1476titleTransposable elements and microevolutionary changes in natural populations
P478volume13

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cites work (P2860)
Q90782035A genomics approach reveals the global genetic polymorphism, structure, and functional diversity of ten accessions of the marine model diatom Phaeodactylum tricornutum
Q38808835Adaptation to Global Change: A Transposable Element-Epigenetics Perspective.
Q46930524Contrasting evolutionary trajectories of multiple retrotransposons following independent allopolyploidy in wild wheats
Q40459721Copy number increases of transposable elements and protein-coding genes in an invasive fish of hybrid origin
Q28648065Detecting endogenous retrovirus-driven tissue-specific gene transcription
Q46622606Differential introgression and reorganization of retrotransposons in hybrid zones between wild wheats
Q40831335Diversity and evolution of Ty1-copia retroelements within Chalcidoidea by reverse transcriptase domain analysis
Q57278814Editorial 2014
Q39013989Environment-directed activation of the Escherichia coliflhDC operon by transposons
Q41139114Evolutionary dynamics of retrotransposons following autopolyploidy in the Buckler Mustard species complex
Q35137510Genetics of cryptic speciation within an Arctic mustard, Draba nivalis
Q54172840Genome reorganization in F1 hybrids uncovers the role of retrotransposons in reproductive isolation.
Q101217312Genome structure and content of the rice root-knot nematode (Meloidogyne graminicola)
Q35193783Genomics of homoploid hybrid speciation: diversity and transcriptional activity of long terminal repeat retrotransposons in hybrid sunflowers
Q41870357Global DNA cytosine methylation as an evolving trait: phylogenetic signal and correlated evolution with genome size in angiosperms
Q57159176Global DNA cytosine methylation variation in Spartina alterniflora at North Inlet, SC
Q41089812Hsp90 and Physiological Stress Are Linked to Autonomous Transposon Mobility and Heritable Genetic Change in Nematodes
Q88874212Identification of transposons near predicted lncRNA and mRNA pools of Prunus mume using an integrative transposable element database constructed from Rosaceae plant genomes
Q46300525Jumping genes: Genomic ballast or powerhouse of biological diversification.
Q31103141Long Terminal Repeat Retrotransposon Content in Eight Diploid Sunflower Species Inferred from Next-Generation Sequence Data
Q28079618Moving through the Stressed Genome: Emerging Regulatory Roles for Transposons in Plant Stress Response
Q38975026Patterns of Evolutionary Trajectories and Domestication History within the Genus Hordeum Assessed by REMAP Markers.
Q90617643Patterns of Genome-Wide Variation, Population Differentiation and SNP Discovery of the Red Banded Stink Bug (Piezodorus guildinii)
Q46473437Profiling Transposable Elements and Their Epigenetic Effects in Non-model Species.
Q47243853Recent activity in expanding populations and purifying selection have shaped transposable element landscapes across natural accessions of the Mediterranean grass Brachypodium distachyon
Q92478919Retrotransposons in Plant Genomes: Structure, Identification, and Classification through Bioinformatics and Machine Learning
Q53840783Secretome Analysis from the Ectomycorrhizal Ascomycete Cenococcum geophilum.
Q38985373The DNA methylation level against the background of the genome size and t-heterochromatin content in some species of the genus Secale L
Q89072881Ty3/Gypsy retrotransposons in the Pacific abalone Haliotis discus hannai: characterization and use for species identification in the genus Haliotis
Q47175288Within-plant variation in seed size and inflorescence fecundity is associated with epigenetic mosaicism in the shrub Lavandula latifolia (Lamiaceae).