Activation of a rice endogenous retrotransposon Tos17 in tissue culture is accompanied by cytosine demethylation and causes heritable alteration in methylation pattern of flanking genomic regions

scientific article published on 8 April 2004

Activation of a rice endogenous retrotransposon Tos17 in tissue culture is accompanied by cytosine demethylation and causes heritable alteration in methylation pattern of flanking genomic regions is …
instance of (P31):
scholarly articleQ13442814

External links are
P356DOI10.1007/S00122-004-1618-8
P698PubMed publication ID15071728

P2093author name stringBao Liu
X Z Wang
M Tan
Z L Liu
G Fedak
S Hao
F P Han
X H Shan
Y Z Dong
P2860cites workGenome evolution in polyploidsQ22122457
The significance of responses of the genome to challengeQ28913697
Cytosine methylation and the ecology of intragenomic parasitesQ29618264
Undermethylation associated with retroelement activation and chromosome remodelling in an interspecific mammalian hybridQ32063623
Eukaryotic DNA methylation as an evolutionary deviceQ33665051
Transposable element contributions to plant gene and genome evolutionQ33845509
Plant retrotransposonsQ33847714
Transposable elements and host genome evolutionQ33890168
Mobilization of transposons by a mutation abolishing full DNA methylation in ArabidopsisQ33946286
DNA methylation and epigenetic inheritance in plants and filamentous fungiQ34086436
Contribution of the Tos17 retrotransposon to rice functional genomicsQ34168011
Perspective: transposable elements, parasitic DNA, and genome evolutionQ34192362
Methylation is not the main force repressing the retrotransposon MAGGY in Magnaporthe griseaQ34286156
Effect of site-specific modification on restriction endonucleases and DNA modification methyltransferasesQ34871498
Robertson's Mutator transposons in A. thaliana are regulated by the chromatin-remodeling gene Decrease in DNA Methylation (DDM1).Q35077392
Genetic instability of plant tissue cultures: breakdown of normal controlsQ35410505
DNA modification of a maize transposable element correlates with loss of activityQ35595085
Genome evolution of wild barley (Hordeum spontaneum) by BARE-1 retrotransposon dynamics in response to sharp microclimatic divergence.Q35789298
Retrotransposons in the flanking regions of normal plant genes: a role for copia-like elements in the evolution of gene structure and expressionQ35939137
Transposable elements as sources of variation in animals and plantsQ36010477
Retrotransposon-mediated genome evolution on a local ecological scaleQ36102660
Tissue culture-induced DNA methylation variation in maizeQ36552687
Retrotransposons of rice involved in mutations induced by tissue cultureQ37440375
Inactivation of maize transposon Mu suppresses a mutant phenotype by activating an outward-reading promoter near the end of Mu1Q37489266
RNA-mediated transposition of the tobacco retrotransposon Tnt1 in Arabidopsis thalianaQ37697551
Isolation and identification by sequence homology of a putative cytosine methyltransferase from Arabidopsis thalianaQ38319075
Methylation pattern of Activator transposase binding sites in maize endosperm.Q38359814
Epigenetic phenomena: paramutation and gene silencing in plantsQ41110765
Turned on by stress. Plant retrotransposonsQ41110778
The contributions of retroelements to plant genome organization, function and evolutionQ41181583
Retrotransposons of rice: their regulation and use for genome analysisQ41590376
Regulation of activator/dissociation transposition by replication and DNA methylationQ42111003
Requirement of CHROMOMETHYLASE3 for maintenance of CpXpG methylationQ43604842
DNA methylation inhibits expression and transposition of the Neurospora Tad retrotransposonQ43679446
Inducible DNA demethylation mediated by the maize Suppressor-mutator transposon-encoded TnpA proteinQ44205949
Role of CG and non-CG methylation in immobilization of transposons in ArabidopsisQ44348859
Disruption of the plant gene MOM releases transcriptional silencing of methylated genesQ47859676
Maintenance of genomic methylation requires a SWI2/SNF2-like proteinQ47964889
Position effect of the excision frequency of the Antirrhinum transposon Tam3: implications for the degree of position-dependent methylation in the ends of the element.Q48337192
An apparent case of nonsymmetrical and sustained strand-specific hemimethylation in the Dc8 gene of carrot.Q52188825
Molecular mechanisms in the developmental regulation of the maize Suppressor-mutator transposable element.Q52249833
Efficient isolation and mapping of Arabidopsis thaliana T-DNA insert junctions by thermal asymmetric interlaced PCR.Q54164416
Arabidopsis thaliana DNA methylation mutantsQ72794055
Retrotransposon activation followed by rapid repression in introgressed rice plantsQ73198711
Silencing of retrotransposons in arabidopsis and reactivation by the ddm1 mutationQ73544249
Active retrotransposons are a common feature of grass genomesQ73598910
Retrotransposons as epigenetic mediators of phenotypic variation in mammalsQ73695300
The rice retrotransposon Tos17 prefers low-copy-number sequences as integration targetsQ73899543
Transcriptional activation of retrotransposons alters the expression of adjacent genes in wheatQ78665395
DNA METHYLATION IN PLANTSQ79759959
P433issue1
P407language of work or nameEnglishQ1860
P921main subjectcytosineQ178425
P304page(s)200-209
P577publication date2004-04-08
P1433published inTheoretical and Applied GeneticsQ2694323
P1476titleActivation of a rice endogenous retrotransposon Tos17 in tissue culture is accompanied by cytosine demethylation and causes heritable alteration in methylation pattern of flanking genomic regions
P478volume109

Reverse relations

cites work (P2860)
Q35216900A 5-methylcytosine DNA glycosylase/lyase demethylates the retrotransposon Tos17 and promotes its transposition in rice.
Q79375546A rice gene activation/knockout mutant resource for high throughput functional genomics
Q80716988Assessment of genetic and epigenetic stability in long-term in vitro shoot culture of pea (Pisum sativum L.).
Q59042959Axillary Bud Proliferation Approach for Plant Biodiversity Conservation and Restoration
Q35309256Bursts of transposable elements as an evolutionary driving force
Q31130857Chromatin immunoprecipitation: optimization, quantitative analysis and data normalization
Q37160731DNA methylation changes and TE activity induced in tissue cultures of barley (Hordeum vulgare L.).
Q49113417DNA methylation of retrotransposons, DNA transposons and genes in sugar beet (Beta vulgaris L.).
Q33951998Differential gene expression and epiregulation of alpha zein gene copies in maize haplotypes
Q46609796Diversity of the Ty-1 copia retrotransposon Tos17 in rice (Oryza sativa L.) and the AA genome of the Oryza genus
Q84928999Dramatic genotypic difference in, and effect of genetic crossing on, tissue culture-induced mobility of retrotransposon Tos17 in rice
Q26809983Epigenomic modification and epigenetic regulation in rice
Q34174557Extended metAFLP approach in studies of tissue culture induced variation (TCIV) in triticale.
Q33749523FIDEL-a retrovirus-like retrotransposon and its distinct evolutionary histories in the A- and B-genome components of cultivated peanut
Q54649252Genetic analysis and high-resolution mapping of a premature senescence gene Pse(t) in rice (Oryza sativa L.).
Q45385720Genetic and molecular analysis of a purple sheath somaclonal mutant in japonica rice
Q94502056Inactivation of retrotransposon Tos17 Chr.7 in rice cultivar Nipponbare through CRISPR/Cas9-mediated gene editing
Q36335216Laser Irradiation-Induced DNA Methylation Changes Are Heritable and Accompanied with Transpositional Activation of mPing in Rice
Q90663422Low Long Terminal Repeat (LTR)-Retrotransposon Expression in Leaves of the Marine Phanerogam Posidonia Oceanica L
Q45753113MERE1, a low-copy-number copia-type retroelement in Medicago truncatula active during tissue culture.
Q38690685Plant-RRBS, a bisulfite and next-generation sequencing-based methylome profiling method enriching for coverage of cytosine positions
Q21283742Potential impact of stress activated retrotransposons on genome evolution in a marine diatom
Q37969600Recent progress in the understanding of tissue culture-induced genome level changes in plants and potential applications
Q48081972SDG714, a histone H3K9 methyltransferase, is involved in Tos17 DNA methylation and transposition in rice
Q34894861Significant expansion of Vicia pannonica genome size mediated by amplification of a single type of giant retroelement
Q46903060Somaclonal variation at the nucleotide sequence level in rice (Oryza sativa L.) as revealed by RAPD and ISSR markers, and by pairwise sequence analysis
Q33344236Tissue culture triggers chromosome alterations, amplification, and transposition of repeat sequences in Allium fistulosum
Q48060205Tissue culture-induced flower-color changes in Saintpaulia caused by excision of the transposon inserted in the flavonoid 3', 5' hydroxylase (F3'5'H) promoter
Q36084109Tissue culture-induced genetic and epigenetic variation in triticale (× Triticosecale spp. Wittmack ex A. Camus 1927) regenerants.
Q35164393Tissue culture-induced heritable genomic variation in rice, and their phenotypic implications
Q33482526Tissue culture-induced transpositional activity of mPing is correlated with cytosine methylation in rice
Q34033635Transgenerational inheritance of modified DNA methylation patterns and enhanced tolerance induced by heavy metal stress in rice (Oryza sativa L.).
Q93083346Transgenerational memory of gene expression changes induced by heavy metal stress in rice (Oryza sativa L.).
Q33717268Transposable elements in a marginal plant population: temporal fluctuations provide new insights into genome evolution of wild diploid wheat
Q38205419Transposable elements, a treasure trove to decipher epigenetic variation: insights from Arabidopsis and crop epigenomes
Q36215212Ty1-copia elements reveal diverse insertion sites linked to polymorphisms among flax (Linum usitatissimum L.) accessions
Q83769839Unintended consequence of plant transformation: biolistic transformation caused transpositional activation of an endogenous retrotransposon Tos17 in rice ssp. japonica cv. Matsumae

Search more.